Wall clock time and date at job start Tue Mar 31 2020 15:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 O 1.42901 * 109.46992 * 119.99809 * 2 1 3 5 5 C 1.35902 * 117.00142 * 84.91818 * 4 2 1 6 6 C 1.38727 * 120.05728 * 174.25241 * 5 4 2 7 7 C 1.38149 * 119.94462 * 179.70211 * 6 5 4 8 8 C 1.38268 * 120.05254 * 0.59386 * 7 6 5 9 9 C 1.50702 * 119.94433 * 179.70045 * 8 7 6 10 10 H 1.08995 * 109.46889 * 204.98242 * 9 8 7 11 11 O 1.42898 * 109.47125 * 324.98192 * 9 8 7 12 12 C 1.53003 * 109.46814 * 84.98113 * 9 8 7 13 13 N 1.46494 * 109.46882 * 180.02562 * 12 9 8 14 14 C 1.34775 * 120.00166 * 179.97438 * 13 12 9 15 15 O 1.21584 * 119.99910 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00542 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00296 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47050 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00124 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99688 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46959 * 90.00504 * 22 20 18 24 24 H 1.48504 * 109.46671 * 210.00435 * 22 20 18 25 25 H 1.48500 * 109.46947 * 329.99898 * 22 20 18 26 26 C 1.38268 * 120.10944 * 359.68411 * 8 7 6 27 27 C 1.38143 * 120.05934 * 0.02562 * 26 8 7 28 28 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47536 * 300.00606 * 1 2 3 30 30 H 1.09004 * 109.46585 * 60.00414 * 1 2 3 31 31 H 1.09000 * 109.47438 * 239.99916 * 2 1 3 32 32 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47199 * 299.99947 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99622 * 3 2 1 35 35 H 1.07997 * 120.03089 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.97373 * 180.32194 * 7 6 5 37 37 H 0.96707 * 114.00053 * 59.99676 * 11 9 8 38 38 H 1.09004 * 109.47093 * 300.00202 * 12 9 8 39 39 H 1.08998 * 109.47138 * 59.99874 * 12 9 8 40 40 H 0.96996 * 120.00176 * 359.97438 * 13 12 9 41 41 H 0.97005 * 119.99501 * 0.02562 * 16 14 13 42 42 H 1.08996 * 109.46886 * 299.99512 * 17 16 14 43 43 H 1.09001 * 109.47109 * 59.99886 * 17 16 14 44 44 H 0.97008 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08004 * 119.96786 * 180.02562 * 26 8 7 46 46 H 1.07997 * 120.02712 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1108 -2.0269 1.0986 6 6 2.6773 -2.7339 2.1491 7 6 2.7768 -4.1101 2.0799 8 6 2.3235 -4.7816 0.9595 9 6 2.4394 -6.2823 0.8837 10 1 2.4656 -6.5923 -0.1608 11 8 3.6405 -6.7007 1.5351 12 6 1.2343 -6.9224 1.5758 13 7 1.3472 -8.3811 1.5027 14 6 0.3926 -9.1592 2.0500 15 8 -0.5622 -8.6505 2.6048 16 7 0.4962 -10.5013 1.9823 17 6 -0.5419 -11.3471 2.5768 18 6 -0.1907 -12.7972 2.3648 19 1 0.7149 -13.0623 1.8394 20 6 -1.0255 -13.7855 2.8416 21 7 -2.1285 -13.4627 3.4809 22 14 -0.5898 -15.5830 2.5794 23 1 0.2260 -16.0663 3.7222 24 1 -1.8358 -16.3857 2.4862 25 1 0.1863 -15.7258 1.3215 26 6 1.7638 -4.0787 -0.0914 27 6 1.6566 -2.7030 -0.0245 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.0362 -2.2094 3.0223 36 1 3.2129 -4.6614 2.8998 37 1 3.6861 -6.4578 2.4701 38 1 1.2081 -6.6122 2.6204 39 1 0.3181 -6.6031 1.0789 40 1 2.1091 -8.7870 1.0604 41 1 1.2581 -10.9072 1.5400 42 1 -0.6100 -11.1418 3.6451 43 1 -1.5002 -11.1328 2.1037 44 1 -2.7161 -14.1580 3.8160 45 1 1.4101 -4.6056 -0.9653 46 1 1.2189 -2.1545 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787370740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:57 Heat of formation + Delta-G solvation = -104.639696 kcal Electronic energy + Delta-G solvation = -25995.399974 eV Core-core repulsion = 22078.060774 eV Total energy + Delta-G solvation = -3917.339200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76386 -39.45873 -38.63903 -36.80946 -34.29175 -33.76705 -33.67142 -32.25730 -31.30581 -30.98450 -28.20010 -27.72593 -26.59148 -24.08604 -23.32678 -22.34851 -22.00936 -20.82304 -20.09009 -18.77793 -18.07738 -17.47533 -16.61567 -16.12864 -15.87569 -15.52138 -15.46073 -15.29392 -14.78549 -14.55490 -14.50427 -14.18630 -13.81115 -13.62451 -13.56520 -13.28030 -13.01214 -12.85829 -12.76784 -12.67300 -12.48071 -12.21743 -11.92557 -11.65405 -11.60968 -11.55806 -10.99547 -10.95657 -10.93005 -10.85635 -10.41208 -10.26917 -9.38943 -9.33415 -9.31749 -8.75476 -8.64441 -8.41583 -7.71368 -6.12283 -4.18624 1.01444 1.05897 2.78231 3.25457 3.27234 3.33392 3.36090 3.50868 3.98634 4.20636 4.25250 4.34680 4.37977 4.46415 4.49259 4.53932 4.60298 4.78052 4.87861 5.00815 5.04345 5.05116 5.22424 5.23153 5.23720 5.24037 5.29891 5.41037 5.58325 5.65086 5.68949 5.76604 5.84724 5.93528 6.02676 6.27438 6.41658 6.86792 7.08684 7.16631 7.34942 7.56033 7.59522 7.60945 7.95185 8.08671 8.80449 8.99154 9.37453 9.52082 10.97973 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.001794 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.337603 B =15602.757774 C =16007.855909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 C -0.149 4.149 4 O -0.311 6.311 5 C 0.133 3.867 6 C -0.150 4.150 7 C -0.067 4.067 8 C -0.151 4.151 9 C 0.143 3.857 10 H 0.112 0.888 11 O -0.551 6.551 12 C 0.116 3.884 13 N -0.753 5.753 14 C 0.692 3.308 15 O -0.603 6.603 16 N -0.729 5.729 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.065 4.065 27 C -0.208 4.208 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.376 0.624 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.396 0.604 41 H 0.387 0.613 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.265 0.735 45 H 0.128 0.872 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 27.934 -9.002 31.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.225 6.225 5 C 0.088 3.912 6 C -0.168 4.168 7 C -0.085 4.085 8 C -0.152 4.152 9 C 0.084 3.916 10 H 0.130 0.870 11 O -0.357 6.357 12 C -0.010 4.010 13 N -0.411 5.411 14 C 0.392 3.608 15 O -0.483 6.483 16 N -0.381 5.381 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.083 4.083 27 C -0.227 4.227 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.219 0.781 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.780 28.191 -8.803 31.440 hybrid contribution 0.483 -1.112 -0.168 1.224 sum 11.263 27.079 -8.971 30.669 Atomic orbital electron populations 1.22404 0.94887 1.03377 1.03277 1.22456 0.94479 0.93701 0.87346 1.21858 1.02122 0.93470 1.03154 1.86125 1.81090 1.16434 1.38892 1.19020 0.95146 0.82593 0.94490 1.20388 1.04005 0.93574 0.98865 1.20694 0.97487 0.93263 0.97089 1.20277 1.03121 0.96088 0.95690 1.20979 0.84287 0.88382 0.97985 0.86982 1.86615 1.39321 1.81630 1.28181 1.21715 0.97823 0.80299 1.01117 1.45012 1.26671 1.05501 1.63964 1.16153 0.82582 0.82248 0.79831 1.90871 1.33451 1.73818 1.50128 1.45705 1.28133 1.03412 1.60851 1.18974 0.85499 0.87351 0.93625 1.21241 1.08298 0.90397 1.38058 0.91925 1.24948 0.94735 0.99575 0.94793 1.69985 1.12012 1.33581 1.36746 0.86407 0.77877 0.83966 0.78584 1.20493 1.21046 1.19787 1.20792 0.96392 0.93245 0.97905 1.21262 1.07044 0.95414 0.98985 0.91619 0.91311 0.90927 0.90838 0.91631 0.90455 0.91392 0.85065 0.85312 0.77533 0.91626 0.91022 0.77058 0.78118 0.95771 0.95777 0.92502 0.85412 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.17 37.16 0.34 -0.71 16 2 C 0.08 0.49 2.85 -26.73 -0.08 0.41 16 3 C -0.15 -0.71 9.56 37.16 0.36 -0.35 16 4 O -0.31 -2.87 9.80 -19.43 -0.19 -3.06 16 5 C 0.13 1.27 6.60 -39.22 -0.26 1.01 16 6 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 7 C -0.07 -0.60 9.32 -39.60 -0.37 -0.97 16 8 C -0.15 -1.41 5.01 -104.60 -0.52 -1.94 16 9 C 0.14 1.38 3.30 -27.88 -0.09 1.29 16 10 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 11 O -0.55 -5.42 12.88 -35.23 -0.45 -5.87 16 12 C 0.12 1.49 5.32 -4.04 -0.02 1.47 16 13 N -0.75 -11.46 5.45 -65.23 -0.36 -11.82 16 14 C 0.69 14.65 8.57 -86.92 -0.74 13.90 16 15 O -0.60 -15.45 16.34 5.29 0.09 -15.36 16 16 N -0.73 -16.00 5.55 -66.42 -0.37 -16.37 16 17 C 0.27 7.29 5.43 -5.20 -0.03 7.26 16 18 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 19 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.07 -0.58 9.67 -39.61 -0.38 -0.96 16 27 C -0.21 -1.81 8.24 -39.43 -0.32 -2.13 16 28 H 0.06 0.44 6.91 -51.93 -0.36 0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.42 6.32 -51.93 -0.33 0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.87 6.61 -52.49 -0.35 0.53 16 37 H 0.38 2.75 7.39 45.56 0.34 3.09 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 5.07 8.36 -40.82 -0.34 4.72 16 41 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.13 0.89 5.43 -52.49 -0.28 0.60 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -35.25 384.61 -8.97 -44.22 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.27 Total: 9.20 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.94 Total: 2.89 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.01 Total: -53.89 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.56 Total: -24.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.25 -8.97 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.416 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds