Wall clock time and date at job start Tue Mar 31 2020 15:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47272 * 2 1 4 4 O 1.42901 * 109.46992 * 119.99809 * 2 1 3 5 5 C 1.35902 * 117.00142 * 84.91818 * 4 2 1 6 6 C 1.38727 * 120.05728 * 174.25241 * 5 4 2 7 7 C 1.38149 * 119.94462 * 179.70211 * 6 5 4 8 8 C 1.38268 * 120.05254 * 0.59386 * 7 6 5 9 9 C 1.50702 * 119.94433 * 179.70045 * 8 7 6 10 10 H 1.08995 * 109.46889 * 204.98242 * 9 8 7 11 11 O 1.42898 * 109.47125 * 324.98192 * 9 8 7 12 12 C 1.53003 * 109.46814 * 84.98113 * 9 8 7 13 13 N 1.46494 * 109.46882 * 180.02562 * 12 9 8 14 14 C 1.34775 * 120.00166 * 179.97438 * 13 12 9 15 15 O 1.21584 * 119.99910 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00542 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00296 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47050 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00124 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99688 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46959 * 90.00504 * 22 20 18 24 24 H 1.48504 * 109.46671 * 210.00435 * 22 20 18 25 25 H 1.48500 * 109.46947 * 329.99898 * 22 20 18 26 26 C 1.38268 * 120.10944 * 359.68411 * 8 7 6 27 27 C 1.38143 * 120.05934 * 0.02562 * 26 8 7 28 28 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47536 * 300.00606 * 1 2 3 30 30 H 1.09004 * 109.46585 * 60.00414 * 1 2 3 31 31 H 1.09000 * 109.47438 * 239.99916 * 2 1 3 32 32 H 1.09000 * 109.47364 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47199 * 299.99947 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99622 * 3 2 1 35 35 H 1.07997 * 120.03089 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.97373 * 180.32194 * 7 6 5 37 37 H 0.96707 * 114.00053 * 59.99676 * 11 9 8 38 38 H 1.09004 * 109.47093 * 300.00202 * 12 9 8 39 39 H 1.08998 * 109.47138 * 59.99874 * 12 9 8 40 40 H 0.96996 * 120.00176 * 359.97438 * 13 12 9 41 41 H 0.97005 * 119.99501 * 0.02562 * 16 14 13 42 42 H 1.08996 * 109.46886 * 299.99512 * 17 16 14 43 43 H 1.09001 * 109.47109 * 59.99886 * 17 16 14 44 44 H 0.97008 * 119.99749 * 179.97438 * 21 20 18 45 45 H 1.08004 * 119.96786 * 180.02562 * 26 8 7 46 46 H 1.07997 * 120.02712 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1108 -2.0269 1.0986 6 6 2.6773 -2.7339 2.1491 7 6 2.7768 -4.1101 2.0799 8 6 2.3235 -4.7816 0.9595 9 6 2.4394 -6.2823 0.8837 10 1 2.4656 -6.5923 -0.1608 11 8 3.6405 -6.7007 1.5351 12 6 1.2343 -6.9224 1.5758 13 7 1.3472 -8.3811 1.5027 14 6 0.3926 -9.1592 2.0500 15 8 -0.5622 -8.6505 2.6048 16 7 0.4962 -10.5013 1.9823 17 6 -0.5419 -11.3471 2.5768 18 6 -0.1907 -12.7972 2.3648 19 1 0.7149 -13.0623 1.8394 20 6 -1.0255 -13.7855 2.8416 21 7 -2.1285 -13.4627 3.4809 22 14 -0.5898 -15.5830 2.5794 23 1 0.2260 -16.0663 3.7222 24 1 -1.8358 -16.3857 2.4862 25 1 0.1863 -15.7258 1.3215 26 6 1.7638 -4.0787 -0.0914 27 6 1.6566 -2.7030 -0.0245 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.0362 -2.2094 3.0223 36 1 3.2129 -4.6614 2.8998 37 1 3.6861 -6.4578 2.4701 38 1 1.2081 -6.6122 2.6204 39 1 0.3181 -6.6031 1.0789 40 1 2.1091 -8.7870 1.0604 41 1 1.2581 -10.9072 1.5400 42 1 -0.6100 -11.1418 3.6451 43 1 -1.5002 -11.1328 2.1037 44 1 -2.7161 -14.1580 3.8160 45 1 1.4101 -4.6056 -0.9653 46 1 1.2189 -2.1545 -0.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787370740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:56 Heat of formation + Delta-G solvation = -131.624471 kcal Electronic energy + Delta-G solvation = -25996.570122 eV Core-core repulsion = 22078.060774 eV Total energy + Delta-G solvation = -3918.509348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44447 -40.87954 -39.61007 -37.60913 -36.16504 -35.24113 -34.29745 -34.19743 -32.00183 -31.78779 -29.66546 -28.31836 -27.99440 -25.14227 -24.37384 -23.79724 -22.75714 -21.87297 -21.39012 -19.80802 -19.38903 -18.38824 -17.99240 -17.38596 -17.09490 -16.62744 -16.42746 -16.33113 -16.09288 -15.81333 -15.61448 -14.97881 -14.91451 -14.83561 -14.41564 -14.26347 -14.11919 -14.00626 -13.91049 -13.45671 -13.32711 -13.20568 -13.07880 -12.88399 -12.78076 -12.69306 -12.27096 -12.20611 -12.12543 -11.58394 -11.53959 -11.46064 -11.37533 -11.12116 -10.78984 -10.28290 -9.98067 -9.57134 -9.11034 -8.26862 -6.43273 0.33226 0.37043 1.44790 1.47688 1.58643 1.88703 2.22706 2.25619 2.40971 2.71426 3.08101 3.42718 3.51362 3.75562 3.78401 3.84842 3.88906 3.95722 3.97590 4.11519 4.16259 4.36581 4.42066 4.57629 4.67135 4.70883 4.78785 4.85291 4.86192 4.91621 5.05220 5.10212 5.17775 5.23617 5.27468 5.28713 5.37616 5.49618 5.52538 5.57485 5.69332 5.77783 5.86805 6.28074 6.46734 6.68253 6.68884 7.26058 7.33390 7.73897 8.85457 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.001794 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.337603 B =15602.757774 C =16007.855909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.147 4.147 4 O -0.327 6.327 5 C 0.122 3.878 6 C -0.166 4.166 7 C -0.072 4.072 8 C -0.162 4.162 9 C 0.163 3.837 10 H 0.125 0.875 11 O -0.558 6.558 12 C 0.114 3.886 13 N -0.727 5.727 14 C 0.690 3.310 15 O -0.651 6.651 16 N -0.723 5.723 17 C 0.285 3.715 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.987 3.013 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 C -0.071 4.071 27 C -0.213 4.213 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.387 0.613 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.405 0.595 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.269 0.731 45 H 0.145 0.855 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.566 27.682 -10.670 32.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.242 6.242 5 C 0.076 3.924 6 C -0.184 4.184 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.103 3.897 10 H 0.143 0.857 11 O -0.366 6.366 12 C -0.010 4.010 13 N -0.384 5.384 14 C 0.390 3.610 15 O -0.534 6.534 16 N -0.376 5.376 17 C 0.161 3.839 18 C -0.593 4.593 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.810 3.190 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C -0.089 4.089 27 C -0.231 4.231 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.237 0.763 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.240 0.760 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.077 0.923 45 H 0.163 0.837 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.721 27.980 -10.511 32.484 hybrid contribution -0.098 -0.877 0.360 0.953 sum 12.623 27.103 -10.151 31.575 Atomic orbital electron populations 1.22393 0.94511 1.02856 1.03926 1.22715 0.94851 0.94370 0.86807 1.21883 1.01975 0.92533 1.03969 1.86114 1.81269 1.16368 1.40426 1.19250 0.95238 0.82988 0.94904 1.20603 1.04492 0.94001 0.99320 1.20940 0.97181 0.93309 0.97515 1.20298 1.04023 0.95767 0.96264 1.20779 0.82615 0.88278 0.98023 0.85694 1.86598 1.38992 1.81728 1.29245 1.21918 0.99416 0.78515 1.01189 1.44766 1.25395 1.06161 1.62104 1.16325 0.82938 0.82108 0.79645 1.90839 1.35783 1.74577 1.52241 1.45293 1.27720 1.03622 1.61003 1.18412 0.85482 0.88791 0.91181 1.21614 1.09138 0.90312 1.38274 0.89814 1.26070 0.94319 1.05162 0.94041 1.70149 1.13419 1.35514 1.37842 0.85126 0.77707 0.76906 0.79256 1.19622 1.20953 1.17954 1.21063 0.95930 0.93485 0.98400 1.21462 1.06880 0.95557 0.99240 0.92678 0.92037 0.88910 0.90036 0.91873 0.88372 0.91838 0.84455 0.83607 0.76268 0.92385 0.91860 0.75092 0.75995 0.99680 0.99649 0.92264 0.83735 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.17 71.98 0.66 -1.24 16 2 C 0.07 0.80 2.85 30.59 0.09 0.89 16 3 C -0.15 -1.22 9.56 71.98 0.69 -0.53 16 4 O -0.33 -5.92 9.80 -92.44 -0.91 -6.82 16 5 C 0.12 2.27 6.60 22.51 0.15 2.42 16 6 C -0.17 -3.01 9.99 22.37 0.22 -2.78 16 7 C -0.07 -1.20 9.32 22.26 0.21 -0.99 16 8 C -0.16 -2.81 5.01 -19.85 -0.10 -2.91 16 9 C 0.16 2.83 3.30 29.85 0.10 2.92 16 10 H 0.13 1.89 8.05 -2.39 -0.02 1.87 16 11 O -0.56 -9.66 12.88 -148.98 -1.92 -11.58 16 12 C 0.11 2.83 5.32 86.38 0.46 3.29 16 13 N -0.73 -21.23 5.45 -478.55 -2.61 -23.84 16 14 C 0.69 29.36 8.57 179.06 1.53 30.90 16 15 O -0.65 -34.38 16.34 -3.98 -0.07 -34.45 16 16 N -0.72 -31.84 5.55 -482.31 -2.68 -34.52 16 17 C 0.28 16.08 5.43 85.63 0.46 16.54 16 18 C -0.56 -30.68 9.28 25.60 0.24 -30.44 16 19 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.20 5.46 84.66 0.46 0.67 16 21 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 22 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 26 C -0.07 -1.15 9.67 22.25 0.22 -0.93 16 27 C -0.21 -3.47 8.24 22.37 0.18 -3.28 16 28 H 0.05 0.70 6.91 -2.39 -0.02 0.68 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 0.81 6.32 -2.39 -0.02 0.80 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.15 1.78 6.61 -2.91 -0.02 1.76 16 37 H 0.39 4.84 7.39 -74.05 -0.55 4.29 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.41 9.58 8.36 -92.71 -0.78 8.81 16 41 H 0.40 14.73 8.34 -92.70 -0.77 13.96 16 42 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.01 -0.92 8.14 -2.39 -0.02 -0.93 16 44 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 45 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 46 H 0.15 1.79 5.43 -2.91 -0.02 1.77 16 Total: -1.00 -78.12 384.61 -1.37 -79.49 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -1.07 Total: 28.97 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.57 Total: 14.51 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -5.00 Total: -114.78 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.89 Total: -52.85 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -78.12 -1.37 -79.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.136 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds