Wall clock time and date at job start Tue Mar 31 2020 15:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 O 1.42905 * 109.47184 * 119.99741 * 2 1 3 5 5 C 1.35902 * 116.99753 * 155.31725 * 4 2 1 6 6 C 1.38735 * 120.05672 * 5.08896 * 5 4 2 7 7 C 1.38148 * 119.93770 * 179.74746 * 6 5 4 8 8 C 1.38261 * 120.06176 * 0.50270 * 7 6 5 9 9 C 1.50694 * 119.94758 * 179.74804 * 8 7 6 10 10 H 1.08999 * 109.47409 * 160.02651 * 9 8 7 11 11 O 1.42899 * 109.46885 * 40.02201 * 9 8 7 12 12 C 1.53002 * 109.47273 * 280.02559 * 9 8 7 13 13 N 1.46495 * 109.47246 * 184.99901 * 12 9 8 14 14 C 1.34780 * 120.00061 * 179.97438 * 13 12 9 15 15 O 1.21588 * 120.00054 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00272 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00158 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47105 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99888 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99894 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00371 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47050 * 89.99418 * 22 20 18 24 24 H 1.48489 * 109.47286 * 209.99792 * 22 20 18 25 25 H 1.48501 * 109.46921 * 330.00095 * 22 20 18 26 26 C 1.38272 * 120.10708 * 359.77214 * 8 7 6 27 27 C 1.38135 * 120.05799 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47164 * 299.99947 * 1 2 3 29 29 H 1.09001 * 109.46816 * 59.99708 * 1 2 3 30 30 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47164 * 240.00053 * 2 1 3 32 32 H 1.09001 * 109.47075 * 300.00343 * 3 2 1 33 33 H 1.08999 * 109.46964 * 59.99931 * 3 2 1 34 34 H 1.09002 * 109.47485 * 179.97438 * 3 2 1 35 35 H 1.08000 * 120.03075 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.96872 * 180.27465 * 7 6 5 37 37 H 0.96701 * 114.00317 * 300.00131 * 11 9 8 38 38 H 1.09008 * 109.46926 * 304.99703 * 12 9 8 39 39 H 1.09003 * 109.47390 * 64.99655 * 12 9 8 40 40 H 0.96997 * 120.00099 * 0.02562 * 13 12 9 41 41 H 0.97009 * 119.99586 * 0.02562 * 16 14 13 42 42 H 1.08996 * 109.47067 * 300.00314 * 17 16 14 43 43 H 1.09000 * 109.46825 * 60.00370 * 17 16 14 44 44 H 0.97001 * 120.00075 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.96695 * 179.97438 * 26 8 7 46 46 H 1.08000 * 120.02987 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2493 -1.2190 1.1001 6 6 4.0367 -1.0184 -0.0244 7 6 5.3019 -1.5695 -0.0875 8 6 5.7797 -2.3291 0.9644 9 6 7.1579 -2.9339 0.8905 10 1 7.5011 -3.1800 1.8954 11 8 8.0580 -1.9966 0.2959 12 6 7.1120 -4.2059 0.0415 13 7 8.4235 -4.8580 0.0675 14 6 8.6200 -6.0039 -0.6144 15 8 7.7089 -6.4960 -1.2516 16 7 9.8267 -6.6036 -0.5909 17 6 10.0405 -7.8487 -1.3326 18 6 11.4633 -8.3082 -1.1435 19 1 12.1404 -7.7307 -0.5317 20 6 11.9001 -9.4663 -1.7507 21 7 13.1416 -9.8675 -1.5853 22 14 10.7288 -10.4656 -2.8084 23 1 10.8063 -9.9938 -4.2143 24 1 11.1070 -11.9002 -2.7462 25 1 9.3417 -10.2971 -2.3056 26 6 4.9946 -2.5352 2.0838 27 6 3.7309 -1.9820 2.1541 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 3.6623 -0.4288 -0.8482 36 1 5.9170 -1.4100 -0.9608 37 1 7.8140 -1.7320 -0.6016 38 1 6.3605 -4.8848 0.4447 39 1 6.8548 -3.9479 -0.9859 40 1 9.1503 -4.4656 0.5761 41 1 10.5538 -6.2107 -0.0829 42 1 9.3587 -8.6141 -0.9618 43 1 9.8523 -7.6771 -2.3925 44 1 13.4489 -10.6825 -2.0122 45 1 5.3699 -3.1293 2.9040 46 1 3.1179 -2.1436 3.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787370741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:31 Heat of formation + Delta-G solvation = -101.207637 kcal Electronic energy + Delta-G solvation = -26060.775054 eV Core-core repulsion = 22143.584678 eV Total energy + Delta-G solvation = -3917.190375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 8.56 seconds Orbital eigenvalues (eV) -40.80085 -39.55320 -38.72801 -36.87259 -34.42224 -33.87380 -33.70025 -32.30439 -31.44635 -30.95607 -28.51038 -27.81471 -26.93758 -23.88974 -23.75621 -22.03830 -21.64157 -21.06889 -20.23316 -18.81398 -18.25301 -17.50874 -16.65138 -16.37872 -15.95023 -15.77986 -15.45549 -15.28654 -14.76910 -14.67660 -14.29987 -14.29851 -14.03714 -13.67220 -13.65913 -13.20042 -13.09588 -12.92282 -12.84489 -12.77896 -12.58298 -12.34989 -12.29462 -11.92222 -11.64981 -11.52452 -11.06373 -11.01016 -10.96485 -10.73809 -10.44032 -9.94083 -9.58314 -9.42618 -9.35272 -8.85820 -8.72332 -8.45742 -7.97831 -6.18017 -4.19725 0.98343 1.01638 2.75252 3.17967 3.29985 3.36372 3.43180 3.45743 3.82923 4.16939 4.22727 4.33907 4.36736 4.40670 4.44497 4.47300 4.58953 4.70734 4.90001 4.94862 5.00137 5.01409 5.07943 5.17504 5.18494 5.20713 5.26088 5.38500 5.56294 5.59776 5.63927 5.70526 5.77111 5.89181 5.98663 6.23832 6.38828 6.74782 6.78260 7.05322 7.14878 7.27783 7.30400 7.44362 7.61145 8.31667 8.72715 8.85081 9.24014 9.43763 10.93972 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.001896 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.983986 B =14761.031198 C =15204.595658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.311 6.311 5 C 0.133 3.867 6 C -0.207 4.207 7 C -0.067 4.067 8 C -0.151 4.151 9 C 0.143 3.857 10 H 0.114 0.886 11 O -0.551 6.551 12 C 0.116 3.884 13 N -0.751 5.751 14 C 0.694 3.306 15 O -0.606 6.606 16 N -0.722 5.722 17 C 0.238 3.762 18 C -0.542 4.542 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 C -0.065 4.065 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.375 0.625 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.393 0.607 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.267 0.733 45 H 0.133 0.867 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 24.075 5.895 33.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.225 6.225 5 C 0.088 3.912 6 C -0.226 4.226 7 C -0.085 4.085 8 C -0.152 4.152 9 C 0.083 3.917 10 H 0.132 0.868 11 O -0.357 6.357 12 C -0.009 4.009 13 N -0.409 5.409 14 C 0.394 3.606 15 O -0.486 6.486 16 N -0.374 5.374 17 C 0.116 3.884 18 C -0.580 4.580 19 H 0.097 0.903 20 C -0.126 4.126 21 N -0.531 5.531 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.185 1.185 26 C -0.083 4.083 27 C -0.170 4.170 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.223 0.777 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.226 0.774 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.151 0.849 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.204 23.367 5.955 33.465 hybrid contribution -0.061 -0.106 -0.864 0.872 sum -23.265 23.262 5.092 33.291 Atomic orbital electron populations 1.21858 0.92331 1.03313 1.03119 1.22466 0.95526 0.92653 0.87403 1.22397 1.02278 0.95919 1.03249 1.86127 1.29145 1.68289 1.38960 1.19031 0.84533 0.93176 0.94450 1.21232 0.96102 1.06359 0.98901 1.20673 0.94781 0.95410 0.97643 1.20260 0.97379 1.01860 0.95739 1.20985 0.85833 0.86895 0.97961 0.86849 1.86630 1.51788 1.63133 1.34110 1.21752 0.85660 0.93280 1.00248 1.44987 1.13745 1.26192 1.55965 1.16116 0.84019 0.80232 0.80227 1.90862 1.42850 1.66687 1.48187 1.45386 1.10230 1.27816 1.54001 1.19354 0.97201 0.80654 0.91235 1.21107 0.94415 1.09637 1.32836 0.90269 1.24780 0.95133 0.96876 0.95847 1.69883 1.15660 1.23750 1.43793 0.86810 0.82160 0.79431 0.81253 1.19876 1.20951 1.18453 1.20834 0.92794 0.97413 0.97234 1.20429 0.96949 1.00725 0.98878 0.91422 0.90432 0.91540 0.90755 0.90909 0.91376 0.91722 0.85178 0.85785 0.77654 0.90892 0.91630 0.76886 0.77393 0.95934 0.96411 0.92304 0.84936 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.56 37.16 0.36 -0.35 16 2 C 0.08 0.47 2.85 -26.73 -0.08 0.39 16 3 C -0.18 -0.93 9.17 37.16 0.34 -0.59 16 4 O -0.31 -2.78 9.80 -19.43 -0.19 -2.97 16 5 C 0.13 1.24 6.60 -39.21 -0.26 0.98 16 6 C -0.21 -1.73 8.24 -39.43 -0.32 -2.05 16 7 C -0.07 -0.56 9.31 -39.61 -0.37 -0.93 16 8 C -0.15 -1.36 4.97 -104.60 -0.52 -1.88 16 9 C 0.14 1.32 3.24 -27.89 -0.09 1.23 16 10 H 0.11 0.97 8.00 -51.93 -0.42 0.56 16 11 O -0.55 -5.26 13.13 -35.23 -0.46 -5.73 16 12 C 0.12 1.41 5.29 -4.04 -0.02 1.39 16 13 N -0.75 -10.89 5.51 -65.22 -0.36 -11.25 16 14 C 0.69 13.94 8.57 -86.92 -0.74 13.20 16 15 O -0.61 -14.59 16.34 5.29 0.09 -14.51 16 16 N -0.72 -15.20 5.55 -66.41 -0.37 -15.57 16 17 C 0.24 6.03 4.50 -5.19 -0.02 6.01 16 18 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 19 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 22 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 26 C -0.06 -0.56 9.66 -39.61 -0.38 -0.94 16 27 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.43 6.31 -51.93 -0.33 0.10 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 6.91 -51.93 -0.36 0.01 16 35 H 0.13 0.85 5.43 -52.49 -0.29 0.57 16 36 H 0.12 0.79 6.78 -52.48 -0.36 0.44 16 37 H 0.38 2.60 7.50 45.56 0.34 2.94 16 38 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.40 4.85 8.49 -40.82 -0.35 4.50 16 41 H 0.39 7.28 8.34 -40.82 -0.34 6.94 16 42 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 43 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.13 0.90 8.03 -52.49 -0.42 0.48 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -35.20 381.51 -8.62 -43.82 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.24 Total: 8.00 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.94 Total: 1.36 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.05 Total: -52.81 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.57 Total: -23.20 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.20 -8.62 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.388 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.56 seconds