Wall clock time and date at job start Tue Mar 31 2020 15:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 O 1.42905 * 109.47184 * 119.99741 * 2 1 3 5 5 C 1.35902 * 116.99753 * 155.31725 * 4 2 1 6 6 C 1.38735 * 120.05672 * 5.08896 * 5 4 2 7 7 C 1.38148 * 119.93770 * 179.74746 * 6 5 4 8 8 C 1.38261 * 120.06176 * 0.50270 * 7 6 5 9 9 C 1.50694 * 119.94758 * 179.74804 * 8 7 6 10 10 H 1.08999 * 109.47409 * 160.02651 * 9 8 7 11 11 O 1.42899 * 109.46885 * 40.02201 * 9 8 7 12 12 C 1.53002 * 109.47273 * 280.02559 * 9 8 7 13 13 N 1.46495 * 109.47246 * 184.99901 * 12 9 8 14 14 C 1.34780 * 120.00061 * 179.97438 * 13 12 9 15 15 O 1.21588 * 120.00054 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00272 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00158 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47105 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00055 * 0.02562 * 18 17 16 20 20 C 1.37868 * 119.99888 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99894 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00371 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47050 * 89.99418 * 22 20 18 24 24 H 1.48489 * 109.47286 * 209.99792 * 22 20 18 25 25 H 1.48501 * 109.46921 * 330.00095 * 22 20 18 26 26 C 1.38272 * 120.10708 * 359.77214 * 8 7 6 27 27 C 1.38135 * 120.05799 * 359.97438 * 26 8 7 28 28 H 1.08999 * 109.47164 * 299.99947 * 1 2 3 29 29 H 1.09001 * 109.46816 * 59.99708 * 1 2 3 30 30 H 1.08997 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47164 * 240.00053 * 2 1 3 32 32 H 1.09001 * 109.47075 * 300.00343 * 3 2 1 33 33 H 1.08999 * 109.46964 * 59.99931 * 3 2 1 34 34 H 1.09002 * 109.47485 * 179.97438 * 3 2 1 35 35 H 1.08000 * 120.03075 * 359.97438 * 6 5 4 36 36 H 1.08003 * 119.96872 * 180.27465 * 7 6 5 37 37 H 0.96701 * 114.00317 * 300.00131 * 11 9 8 38 38 H 1.09008 * 109.46926 * 304.99703 * 12 9 8 39 39 H 1.09003 * 109.47390 * 64.99655 * 12 9 8 40 40 H 0.96997 * 120.00099 * 0.02562 * 13 12 9 41 41 H 0.97009 * 119.99586 * 0.02562 * 16 14 13 42 42 H 1.08996 * 109.47067 * 300.00314 * 17 16 14 43 43 H 1.09000 * 109.46825 * 60.00370 * 17 16 14 44 44 H 0.97001 * 120.00075 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.96695 * 179.97438 * 26 8 7 46 46 H 1.08000 * 120.02987 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2493 -1.2190 1.1001 6 6 4.0367 -1.0184 -0.0244 7 6 5.3019 -1.5695 -0.0875 8 6 5.7797 -2.3291 0.9644 9 6 7.1579 -2.9339 0.8905 10 1 7.5011 -3.1800 1.8954 11 8 8.0580 -1.9966 0.2959 12 6 7.1120 -4.2059 0.0415 13 7 8.4235 -4.8580 0.0675 14 6 8.6200 -6.0039 -0.6144 15 8 7.7089 -6.4960 -1.2516 16 7 9.8267 -6.6036 -0.5909 17 6 10.0405 -7.8487 -1.3326 18 6 11.4633 -8.3082 -1.1435 19 1 12.1404 -7.7307 -0.5317 20 6 11.9001 -9.4663 -1.7507 21 7 13.1416 -9.8675 -1.5853 22 14 10.7288 -10.4656 -2.8084 23 1 10.8063 -9.9938 -4.2143 24 1 11.1070 -11.9002 -2.7462 25 1 9.3417 -10.2971 -2.3056 26 6 4.9946 -2.5352 2.0838 27 6 3.7309 -1.9820 2.1541 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 3.6623 -0.4288 -0.8482 36 1 5.9170 -1.4100 -0.9608 37 1 7.8140 -1.7320 -0.6016 38 1 6.3605 -4.8848 0.4447 39 1 6.8548 -3.9479 -0.9859 40 1 9.1503 -4.4656 0.5761 41 1 10.5538 -6.2107 -0.0829 42 1 9.3587 -8.6141 -0.9618 43 1 9.8523 -7.6771 -2.3925 44 1 13.4489 -10.6825 -2.0122 45 1 5.3699 -3.1293 2.9040 46 1 3.1179 -2.1436 3.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787370741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:13 Heat of formation + Delta-G solvation = -128.222498 kcal Electronic energy + Delta-G solvation = -26061.946506 eV Core-core repulsion = 22143.584678 eV Total energy + Delta-G solvation = -3918.361827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 22.08 seconds Orbital eigenvalues (eV) -41.44934 -40.90940 -39.60856 -37.62686 -36.19198 -35.26878 -34.35843 -34.18565 -32.14524 -31.69643 -30.09980 -28.42205 -28.02352 -24.88244 -24.38108 -23.77480 -22.39363 -21.96199 -21.54278 -19.92086 -19.39825 -18.41965 -18.24828 -17.36095 -17.19311 -16.63334 -16.44889 -16.26411 -16.05494 -15.82038 -15.47395 -15.17559 -14.94760 -14.86809 -14.61111 -14.36408 -14.30624 -14.19834 -13.65518 -13.59985 -13.40680 -13.17569 -13.08571 -13.01633 -12.82652 -12.67984 -12.21813 -12.11296 -11.91466 -11.64449 -11.63346 -11.54209 -11.39560 -11.12250 -10.90330 -10.32490 -9.98209 -9.64724 -9.11476 -8.38290 -6.45146 0.33359 0.36739 1.34739 1.36491 1.50046 1.85618 2.21777 2.22601 2.30254 2.71058 2.97267 3.41280 3.48752 3.72152 3.77451 3.82920 3.89408 3.94365 3.98928 4.12829 4.17796 4.36776 4.41889 4.57039 4.67453 4.67997 4.78776 4.80509 4.84455 4.88542 4.89987 5.05492 5.07067 5.17102 5.23327 5.26548 5.27309 5.36867 5.49692 5.57109 5.57725 5.78330 5.98808 6.29698 6.46339 6.57074 6.69235 7.15678 7.27779 7.67560 8.76423 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.001896 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.983986 B =14761.031198 C =15204.595658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 C -0.177 4.177 4 O -0.327 6.327 5 C 0.122 3.878 6 C -0.212 4.212 7 C -0.072 4.072 8 C -0.162 4.162 9 C 0.160 3.840 10 H 0.124 0.876 11 O -0.559 6.559 12 C 0.115 3.885 13 N -0.728 5.728 14 C 0.694 3.306 15 O -0.646 6.646 16 N -0.722 5.722 17 C 0.251 3.749 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.027 3.973 21 N -0.931 5.931 22 Si 0.938 3.062 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.261 1.261 26 C -0.069 4.069 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.387 0.613 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.412 0.588 41 H 0.405 0.595 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.272 0.728 45 H 0.149 0.851 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.767 25.191 5.526 35.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.234 4.234 4 O -0.241 6.241 5 C 0.076 3.924 6 C -0.231 4.231 7 C -0.090 4.090 8 C -0.163 4.163 9 C 0.101 3.899 10 H 0.142 0.858 11 O -0.367 6.367 12 C -0.009 4.009 13 N -0.385 5.385 14 C 0.394 3.606 15 O -0.529 6.529 16 N -0.375 5.375 17 C 0.127 3.873 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.174 4.174 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.185 1.185 26 C -0.087 4.087 27 C -0.185 4.185 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.248 0.752 41 H 0.240 0.760 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.082 0.918 45 H 0.166 0.834 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.296 24.551 5.619 34.995 hybrid contribution 0.254 -0.340 -0.705 0.823 sum -24.042 24.211 4.914 34.473 Atomic orbital electron populations 1.21885 0.91347 1.03189 1.04017 1.22717 0.96353 0.93039 0.86746 1.22373 1.01781 0.95328 1.03959 1.86114 1.29084 1.68545 1.40403 1.19261 0.84891 0.93329 0.94895 1.21432 0.96076 1.06444 0.99122 1.20957 0.95019 0.94941 0.98126 1.20279 0.97252 1.02503 0.96270 1.20792 0.86186 0.85314 0.97622 0.85849 1.86615 1.51994 1.62923 1.35135 1.21939 0.83931 0.94252 1.00812 1.44813 1.15218 1.24227 1.54280 1.16224 0.82946 0.81200 0.80271 1.90833 1.43921 1.68117 1.50041 1.45110 1.11339 1.26980 1.54111 1.18946 0.95137 0.82085 0.91138 1.21288 0.95340 1.09548 1.32257 0.92282 1.25582 0.96590 0.98061 0.97120 1.69981 1.17348 1.24600 1.45053 0.85846 0.79830 0.78383 0.79761 1.18941 1.19765 1.18525 1.21062 0.92619 0.97300 0.97704 1.20638 0.97399 1.01129 0.99334 0.91623 0.88429 0.92168 0.90358 0.89018 0.91837 0.92422 0.83707 0.83951 0.76327 0.91684 0.91946 0.75186 0.75978 0.97186 0.97291 0.91844 0.83377 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.56 71.98 0.69 -0.54 16 2 C 0.07 0.76 2.85 30.59 0.09 0.85 16 3 C -0.18 -1.59 9.17 71.98 0.66 -0.93 16 4 O -0.33 -5.69 9.80 -92.44 -0.91 -6.60 16 5 C 0.12 2.18 6.60 22.51 0.15 2.33 16 6 C -0.21 -3.28 8.24 22.37 0.18 -3.10 16 7 C -0.07 -1.09 9.31 22.25 0.21 -0.89 16 8 C -0.16 -2.64 4.97 -19.85 -0.10 -2.74 16 9 C 0.16 2.63 3.24 29.85 0.10 2.73 16 10 H 0.12 1.80 8.00 -2.39 -0.02 1.78 16 11 O -0.56 -9.32 13.13 -148.98 -1.96 -11.28 16 12 C 0.12 2.62 5.29 86.38 0.46 3.07 16 13 N -0.73 -19.86 5.51 -478.52 -2.64 -22.50 16 14 C 0.69 27.16 8.57 179.05 1.53 28.70 16 15 O -0.65 -30.76 16.34 -3.99 -0.07 -30.82 16 16 N -0.72 -29.89 5.55 -482.29 -2.68 -32.57 16 17 C 0.25 12.65 4.50 85.64 0.38 13.04 16 18 C -0.55 -30.61 9.83 25.60 0.25 -30.35 16 19 H 0.06 3.47 7.84 -2.91 -0.02 3.44 16 20 C 0.03 1.53 5.47 84.65 0.46 1.99 16 21 N -0.93 -55.95 13.96 21.44 0.30 -55.65 16 22 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 23 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 26 C -0.07 -1.10 9.66 22.25 0.21 -0.89 16 27 C -0.17 -2.88 9.99 22.36 0.22 -2.66 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.80 6.31 -2.39 -0.02 0.79 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.60 6.91 -2.39 -0.02 0.58 16 35 H 0.15 1.68 5.43 -2.91 -0.02 1.67 16 36 H 0.14 1.50 6.78 -2.91 -0.02 1.48 16 37 H 0.39 4.41 7.50 -74.06 -0.56 3.85 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 9.11 8.49 -92.71 -0.79 8.32 16 41 H 0.41 14.67 8.34 -92.70 -0.77 13.89 16 42 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 43 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.15 1.77 8.03 -2.91 -0.02 1.75 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -74.78 381.51 -1.70 -76.48 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -1.15 Total: 25.90 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.50 Total: 10.61 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -5.01 Total: -110.71 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -2.93 Total: -48.70 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -74.78 -1.70 -76.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.738 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.08 seconds