Wall clock time and date at job start Tue Mar 31 2020 16:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 N 1.46893 * 109.47440 * 119.99811 * 2 1 3 5 5 C 1.46893 * 111.00163 * 275.00522 * 4 2 1 6 6 C 1.52998 * 109.47335 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47268 * 299.99952 * 6 5 4 8 8 C 1.53001 * 109.47160 * 59.99710 * 6 5 4 9 9 C 1.53005 * 109.47715 * 179.97438 * 6 5 4 10 10 C 1.50692 * 109.47389 * 180.02562 * 9 6 5 11 11 H 1.07996 * 120.00271 * 359.97438 * 10 9 6 12 12 C 1.37878 * 120.00036 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99602 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00147 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47541 * 89.99761 * 14 12 10 16 16 H 1.48497 * 109.46962 * 209.99476 * 14 12 10 17 17 H 1.48498 * 109.47100 * 329.99457 * 14 12 10 18 18 C 1.50699 * 109.47185 * 240.00418 * 2 1 3 19 19 C 1.38171 * 120.02521 * 264.99940 * 18 2 1 20 20 C 1.38244 * 120.05436 * 180.27947 * 19 18 2 21 21 N 1.48005 * 119.94465 * 179.72176 * 20 19 18 22 22 O 1.21806 * 119.99900 * 359.97438 * 21 20 19 23 23 O 1.21794 * 120.00208 * 179.97438 * 21 20 19 24 24 C 1.38293 * 120.11190 * 359.48377 * 20 19 18 25 25 C 1.38125 * 120.05080 * 0.51384 * 24 20 19 26 26 C 1.38706 * 120.03061 * 85.01706 * 18 2 1 27 27 O 1.35899 * 120.05795 * 359.96041 * 26 18 2 28 28 H 1.08998 * 109.47374 * 299.99688 * 1 2 3 29 29 H 1.09003 * 109.47404 * 59.99774 * 1 2 3 30 30 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 31 31 H 1.00910 * 110.99834 * 38.95427 * 4 2 1 32 32 H 1.08999 * 109.47156 * 299.99403 * 5 4 2 33 33 H 1.09000 * 109.47992 * 59.99806 * 5 4 2 34 34 H 1.09001 * 109.47080 * 59.99775 * 7 6 5 35 35 H 1.08996 * 109.47450 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46850 * 300.00094 * 7 6 5 37 37 H 1.08999 * 109.47214 * 60.00518 * 8 6 5 38 38 H 1.09002 * 109.47737 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.47138 * 300.00194 * 8 6 5 40 40 H 1.08998 * 109.46807 * 300.00481 * 9 6 5 41 41 H 1.09000 * 109.46689 * 59.99731 * 9 6 5 42 42 H 0.97002 * 119.99907 * 180.02562 * 13 12 10 43 43 H 1.08002 * 119.96962 * 359.97438 * 19 18 2 44 44 H 1.07993 * 119.97129 * 180.23595 * 24 20 19 45 45 H 1.08006 * 120.02461 * 179.72622 * 25 24 20 46 46 H 0.96694 * 114.00362 * 89.99464 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3468 6 6 2.5950 -0.5331 3.5744 7 6 1.6453 -1.6889 3.8952 8 6 3.9922 -1.0861 3.2861 9 6 2.6610 0.4201 4.7694 10 6 3.1665 -0.3241 5.9783 11 1 3.4155 -1.3722 5.9021 12 6 3.3103 0.3328 7.1820 13 7 3.0066 1.6090 7.2749 14 14 3.9376 -0.5895 8.6804 15 1 5.4186 -0.4953 8.7356 16 1 3.3574 0.0095 9.9091 17 1 3.5355 -2.0161 8.5877 18 6 2.0323 -0.7103 -1.2305 19 6 2.3611 -2.0509 -1.1691 20 6 2.8275 -2.7017 -2.2961 21 7 3.1848 -4.1363 -2.2261 22 8 3.0682 -4.7424 -1.1760 23 8 3.5953 -4.7108 -3.2185 24 6 2.9560 -2.0158 -3.4901 25 6 2.6286 -0.6756 -3.5565 26 6 2.1654 -0.0188 -2.4255 27 8 1.8422 1.2997 -2.4886 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.4495 -1.4979 1.4100 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 1.5987 -2.3679 3.0438 35 1 2.0102 -2.2270 4.7700 36 1 0.6499 -1.2949 4.1005 37 1 4.6689 -0.2628 3.0577 38 1 4.3573 -1.6249 4.1605 39 1 3.9456 -1.7652 2.4347 40 1 3.3379 1.2432 4.5406 41 1 1.6658 0.8144 4.9749 42 1 3.1081 2.0713 8.1216 43 1 2.2583 -2.5896 -0.2387 44 1 3.3170 -2.5274 -4.3700 45 1 2.7334 -0.1392 -4.4881 46 1 2.5781 1.8949 -2.2908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806177041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:31 Heat of formation + Delta-G solvation = -54.731651 kcal Electronic energy + Delta-G solvation = -27576.698174 eV Core-core repulsion = 23661.523149 eV Total energy + Delta-G solvation = -3915.175025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.22649 -41.34282 -39.31011 -37.91847 -37.65142 -36.81033 -34.49818 -32.29706 -32.07168 -30.16341 -28.79369 -27.90144 -27.23064 -26.72687 -25.19644 -24.36780 -23.26742 -21.94657 -20.19304 -19.71223 -19.70771 -19.26138 -18.56888 -18.32449 -17.24600 -16.74128 -16.64879 -16.44887 -15.89478 -15.42909 -15.32348 -14.76314 -14.69151 -14.49171 -14.31406 -14.01630 -13.89107 -13.59050 -13.41421 -13.29329 -12.95478 -12.78673 -12.74361 -12.67269 -12.52016 -12.40716 -12.27835 -12.26979 -12.18358 -12.09325 -11.93572 -11.61404 -11.38737 -10.86666 -10.75321 -10.50074 -10.33807 -10.13113 -9.37912 -8.14403 -6.20491 -1.25049 -0.06861 0.24417 0.41644 1.40448 1.41021 1.51269 2.14350 2.43418 2.94153 3.03378 3.19961 3.32219 3.48988 3.85591 3.90301 4.06569 4.15727 4.17995 4.23429 4.29577 4.38921 4.59329 4.64600 4.71159 4.72657 4.75116 4.81912 4.92912 4.97500 5.03316 5.07437 5.13959 5.17873 5.22234 5.24226 5.41057 5.52857 5.54875 5.59106 5.65125 5.87133 5.93540 6.03371 6.37543 6.40199 6.49840 6.61588 6.94789 7.46810 8.97700 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002928 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.807871 B = 9561.303044 C =10740.757455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.130 3.870 3 H 0.101 0.899 4 N -0.682 5.682 5 C 0.086 3.914 6 C -0.055 4.055 7 C -0.124 4.124 8 C -0.107 4.107 9 C 0.042 3.958 10 C -0.514 4.514 11 H 0.063 0.937 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.952 3.048 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.099 4.099 19 C -0.024 4.024 20 C -0.076 4.076 21 N 0.033 4.967 22 O -0.201 6.201 23 O -0.168 6.168 24 C -0.039 4.039 25 C -0.134 4.134 26 C 0.180 3.820 27 O -0.491 6.491 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.345 0.655 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.064 0.936 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.259 0.741 43 H 0.149 0.851 44 H 0.172 0.828 45 H 0.186 0.814 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -1.791 -25.303 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.119 0.881 4 N -0.314 5.314 5 C -0.042 4.042 6 C -0.055 4.055 7 C -0.181 4.181 8 C -0.165 4.165 9 C 0.004 3.996 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.777 3.223 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.101 4.101 19 C -0.043 4.043 20 C -0.159 4.159 21 N 0.547 4.453 22 O -0.409 6.409 23 O -0.385 6.385 24 C -0.058 4.058 25 C -0.153 4.153 26 C 0.134 3.866 27 O -0.307 6.307 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.068 0.932 43 H 0.167 0.833 44 H 0.189 0.811 45 H 0.203 0.797 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.102 -1.104 -25.457 25.669 hybrid contribution -0.045 -0.290 1.817 1.841 sum -3.147 -1.393 -23.640 23.889 Atomic orbital electron populations 1.22397 0.94998 1.02525 1.03081 1.20291 0.93495 0.97555 0.86705 0.88124 1.60621 1.57252 1.09936 1.03583 1.21812 0.98634 0.94501 0.89291 1.20496 0.95849 0.95681 0.93513 1.21695 0.97992 0.97597 1.00812 1.21504 0.95300 0.99676 0.99975 1.18982 0.94259 0.93711 0.92611 1.21630 1.41939 0.96669 0.95004 0.91884 1.25857 0.96293 0.95645 1.02076 1.70092 1.50729 1.10565 1.26387 0.85642 0.78494 0.79138 0.78982 1.20218 1.21216 1.18883 1.20176 1.01400 0.92756 0.95747 1.20748 0.92167 0.94233 0.97157 1.21286 1.15055 0.80219 0.99362 1.43925 0.97350 1.04233 0.99794 1.94578 1.59239 1.67915 1.19121 1.94477 1.47080 1.70264 1.26681 1.21171 0.94359 0.94373 0.95906 1.21681 0.99859 0.93147 1.00632 1.18644 0.91049 0.85878 0.91079 1.84743 1.41193 1.12406 1.92340 0.92221 0.90749 0.92340 0.83461 0.91816 0.95546 0.91655 0.93772 0.94201 0.94907 0.94615 0.91734 0.99535 0.99542 0.93181 0.83290 0.81077 0.79724 0.71410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.14 71.98 0.66 -2.28 16 2 C 0.13 2.34 2.52 44.17 0.11 2.45 16 3 H 0.10 1.72 7.35 -2.39 -0.02 1.70 16 4 N -0.68 -15.85 4.46 -495.49 -2.21 -18.06 16 5 C 0.09 2.60 4.44 86.30 0.38 2.98 16 6 C -0.05 -2.07 0.60 -52.18 -0.03 -2.10 16 7 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16 8 C -0.11 -3.96 8.06 71.98 0.58 -3.38 16 9 C 0.04 2.10 4.04 29.85 0.12 2.22 16 10 C -0.51 -28.09 7.65 25.60 0.20 -27.90 16 11 H 0.06 3.34 5.68 -2.91 -0.02 3.32 16 12 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 13 N -0.94 -56.46 13.29 21.45 0.28 -56.17 16 14 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 18 C -0.10 -1.63 5.07 -19.77 -0.10 -1.73 16 19 C -0.02 -0.47 8.83 22.26 0.20 -0.27 16 20 C -0.08 -1.53 6.85 36.39 0.25 -1.28 16 21 N 0.03 0.87 4.45 -46.44 -0.21 0.67 16 22 O -0.20 -6.02 18.44 18.88 0.35 -5.67 16 23 O -0.17 -4.37 18.44 18.89 0.35 -4.02 16 24 C -0.04 -0.52 9.55 22.26 0.21 -0.31 16 25 C -0.13 -1.24 9.99 22.37 0.22 -1.02 16 26 C 0.18 2.14 6.68 22.50 0.15 2.29 16 27 O -0.49 -4.24 12.64 -92.42 -1.17 -5.41 16 28 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.34 7.85 5.94 -89.69 -0.53 7.31 16 32 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 33 H 0.03 0.80 7.44 -2.39 -0.02 0.79 16 34 H 0.06 1.86 6.57 -2.39 -0.02 1.84 16 35 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.03 1.44 6.62 -2.39 -0.02 1.42 16 39 H 0.06 2.08 7.60 -2.39 -0.02 2.06 16 40 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.15 3.31 6.44 -2.91 -0.02 3.29 16 44 H 0.17 1.67 7.61 -2.91 -0.02 1.65 16 45 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 46 H 0.42 0.15 9.06 -74.06 -0.67 -0.52 16 Total: -1.00 -69.39 377.00 3.21 -66.17 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.19 Total: 9.85 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 3.98 Total: -33.72 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -2.13 Total: -73.57 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.47 Total: -15.10 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.39 3.21 -66.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806177041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.443 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds