Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00134 * 6 5 4 8 8 C 1.52999 * 109.47317 * 59.99645 * 6 5 4 9 9 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 6 5 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 6 13 13 N 1.31511 * 120.00113 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99923 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47375 * 89.99678 * 14 12 10 16 16 H 1.48508 * 109.47196 * 209.99673 * 14 12 10 17 17 H 1.48504 * 109.47051 * 329.99297 * 14 12 10 18 18 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 19 19 C 1.38166 * 120.03477 * 99.72528 * 18 2 1 20 20 C 1.38234 * 120.05640 * 179.72360 * 19 18 2 21 21 N 1.48008 * 119.94482 * 180.25087 * 20 19 18 22 22 O 1.21801 * 119.99945 * 180.29013 * 21 20 19 23 23 O 1.21801 * 119.99587 * 0.30456 * 21 20 19 24 24 C 1.38294 * 120.11205 * 0.55074 * 20 19 18 25 25 C 1.38111 * 120.05507 * 359.72199 * 24 20 19 26 26 C 1.38708 * 120.02299 * 279.99809 * 18 2 1 27 27 O 1.35907 * 120.05937 * 359.97438 * 26 18 2 28 28 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 29 29 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 30 30 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 34 34 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 35 35 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 37 37 H 1.09002 * 109.46716 * 60.00091 * 8 6 5 38 38 H 1.09000 * 109.47486 * 180.02562 * 8 6 5 39 39 H 1.09001 * 109.47362 * 300.00732 * 8 6 5 40 40 H 1.09002 * 109.47103 * 300.00247 * 9 6 5 41 41 H 1.09001 * 109.47066 * 60.00169 * 9 6 5 42 42 H 0.97008 * 120.00167 * 179.97438 * 13 12 10 43 43 H 1.08006 * 119.96751 * 359.97438 * 19 18 2 44 44 H 1.08002 * 119.96941 * 179.70225 * 24 20 19 45 45 H 1.08003 * 120.03047 * 179.97438 * 25 24 20 46 46 H 0.96691 * 113.99899 * 89.99325 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 3.9935 -1.0850 -3.2853 8 6 1.6472 -1.6890 -3.8955 9 6 2.6610 0.4203 -4.7694 10 6 3.1676 -0.3236 -5.9782 11 1 3.4178 -1.3714 -5.9017 12 6 3.3106 0.3332 -7.1820 13 7 3.7531 -0.3158 -8.2367 14 14 2.8770 2.1454 -7.3145 15 1 4.0768 2.9651 -7.0081 16 1 2.4125 2.4437 -8.6931 17 1 1.7970 2.4679 -6.3476 18 6 2.0323 -0.7106 1.2304 19 6 2.4533 -2.0239 1.1470 20 6 2.9196 -2.6743 2.2742 21 7 3.3752 -4.0794 2.1809 22 8 3.7812 -4.6552 3.1745 23 8 3.3443 -4.6599 1.1105 24 6 2.9552 -2.0163 3.4900 25 6 2.5302 -0.7053 3.5798 26 6 2.0671 -0.0484 2.4487 27 8 1.6488 1.2419 2.5344 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.9173 -1.1205 -1.0288 32 1 1.0870 0.6165 -2.5525 33 1 2.7588 1.0463 -2.1182 34 1 3.9468 -1.7640 -2.4340 35 1 4.3592 -1.6235 -4.1595 36 1 4.6696 -0.2612 -3.0564 37 1 0.6517 -1.2956 -4.1014 38 1 2.0134 -2.2275 -4.7697 39 1 1.6005 -2.3681 -3.0442 40 1 1.6653 0.8133 -4.9751 41 1 3.3369 1.2443 -4.5408 42 1 3.8534 0.1462 -9.0837 43 1 2.4219 -2.5414 0.1995 44 1 3.3154 -2.5283 4.3701 45 1 2.5578 -0.1920 4.5296 46 1 0.7074 1.3377 2.7333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806177042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -29.280139 kcal Electronic energy + Delta-G solvation = -27646.683479 eV Core-core repulsion = 23732.612115 eV Total energy + Delta-G solvation = -3914.071365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38734 -40.80112 -38.11142 -37.42353 -36.73212 -35.65668 -32.51391 -31.52758 -31.26561 -29.57718 -27.57252 -26.47929 -26.41474 -25.56298 -24.20900 -22.88780 -22.01796 -20.88891 -19.34756 -19.17332 -18.82468 -17.85276 -17.69909 -16.82001 -16.68492 -16.28246 -15.82141 -15.11755 -14.76729 -14.49541 -14.09315 -13.86675 -13.67423 -13.34105 -13.13082 -13.01374 -12.77098 -12.42659 -12.31010 -12.24081 -12.08030 -11.77438 -11.58980 -11.35828 -11.29183 -11.14145 -11.03192 -10.98026 -10.85934 -10.52810 -10.37636 -9.86498 -9.83708 -9.70487 -9.58762 -9.33765 -8.92776 -8.51006 -8.41881 -6.00861 -3.97300 -0.51814 0.42202 0.97361 1.16407 2.66084 3.30368 3.35188 3.38412 3.40921 3.80315 3.90414 4.04949 4.38540 4.46767 4.47744 4.70044 4.90427 5.04593 5.12174 5.20985 5.30084 5.31630 5.37267 5.47392 5.57521 5.58805 5.66667 5.73781 5.81997 6.01590 6.07719 6.15639 6.18055 6.36079 6.55373 6.63591 6.77201 6.84812 6.99212 7.07695 7.12347 7.20249 7.27809 7.35387 7.44361 7.46713 7.83565 8.58516 9.05239 9.61933 11.12224 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.003046 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.726049 B = 9189.457793 C =10380.666419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.124 3.876 3 H 0.067 0.933 4 N -0.682 5.682 5 C 0.068 3.932 6 C -0.049 4.049 7 C -0.132 4.132 8 C -0.118 4.118 9 C -0.003 4.003 10 C -0.508 4.508 11 H 0.078 0.922 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.875 3.125 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.267 1.267 18 C -0.108 4.108 19 C -0.029 4.029 20 C -0.053 4.053 21 N 0.029 4.971 22 O -0.167 6.167 23 O -0.148 6.148 24 C -0.044 4.044 25 C -0.146 4.146 26 C 0.166 3.834 27 O -0.487 6.487 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.341 0.659 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.015 0.985 41 H 0.007 0.993 42 H 0.261 0.739 43 H 0.170 0.830 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 1.287 26.645 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.014 3.986 3 H 0.085 0.915 4 N -0.316 5.316 5 C -0.061 4.061 6 C -0.049 4.049 7 C -0.189 4.189 8 C -0.175 4.175 9 C -0.041 4.041 10 C -0.546 4.546 11 H 0.096 0.904 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.703 3.297 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.192 1.192 18 C -0.109 4.109 19 C -0.048 4.048 20 C -0.137 4.137 21 N 0.549 4.451 22 O -0.381 6.381 23 O -0.367 6.367 24 C -0.063 4.063 25 C -0.165 4.165 26 C 0.120 3.880 27 O -0.299 6.299 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.188 0.812 44 H 0.174 0.826 45 H 0.170 0.830 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.665 1.879 26.223 27.122 hybrid contribution 0.284 1.202 0.121 1.241 sum -6.381 3.081 26.344 27.280 Atomic orbital electron populations 1.21747 0.93024 1.02780 1.01544 1.20387 0.96367 0.95862 0.85972 0.91541 1.60795 1.33705 1.33626 1.03428 1.22221 1.00435 0.93169 0.90250 1.20428 0.94806 0.96422 0.93245 1.21800 0.96427 0.99761 1.00955 1.21618 0.97882 0.97346 1.00669 1.19619 0.96327 0.94597 0.93573 1.21131 1.42818 0.98359 0.92263 0.90359 1.25016 0.94916 0.97723 0.95908 1.69908 1.47102 1.36477 1.00922 0.86855 0.79181 0.86465 0.77179 1.20545 1.21542 1.19173 1.20422 1.00923 0.93222 0.96373 1.20975 0.91562 0.93591 0.98656 1.21139 1.11727 0.83263 0.97524 1.43561 0.98282 1.02829 1.00465 1.94526 1.48349 1.67664 1.27519 1.94604 1.58431 1.67095 1.16541 1.20908 0.94849 0.94119 0.96423 1.21399 1.02082 0.93497 0.99491 1.18609 0.94267 0.83521 0.91557 1.84786 1.31155 1.20562 1.93375 0.93213 0.91300 0.91642 0.83750 0.91185 0.95572 0.94686 0.90918 0.94165 0.94193 0.92000 0.93614 0.96703 0.97448 0.92869 0.81232 0.82603 0.82950 0.73944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.39 37.16 0.35 -0.78 16 2 C 0.12 1.22 2.49 -68.86 -0.17 1.04 16 3 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 4 N -0.68 -8.37 4.82 -107.95 -0.52 -8.89 16 5 C 0.07 1.01 4.45 -3.83 -0.02 1.00 16 6 C -0.05 -0.90 0.60 -154.51 -0.09 -0.99 16 7 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 8 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 9 C 0.00 -0.08 3.11 -27.89 -0.09 -0.16 16 10 C -0.51 -13.83 8.20 -34.44 -0.28 -14.11 16 11 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 12 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 13 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 14 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C -0.11 -0.95 5.00 -104.48 -0.52 -1.47 16 19 C -0.03 -0.29 8.37 -39.61 -0.33 -0.62 16 20 C -0.05 -0.54 6.85 -79.93 -0.55 -1.09 16 21 N 0.03 0.37 4.45 33.97 0.15 0.52 16 22 O -0.17 -2.15 18.44 -29.46 -0.54 -2.69 16 23 O -0.15 -2.10 18.44 -29.46 -0.54 -2.65 16 24 C -0.04 -0.33 9.55 -39.61 -0.38 -0.71 16 25 C -0.15 -0.88 9.99 -39.44 -0.39 -1.27 16 26 C 0.17 1.19 6.67 -39.22 -0.26 0.93 16 27 O -0.49 -2.87 12.67 -19.45 -0.25 -3.12 16 28 H 0.05 0.29 7.64 -51.93 -0.40 -0.11 16 29 H 0.07 0.65 7.45 -51.92 -0.39 0.26 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.34 4.24 5.03 -39.29 -0.20 4.04 16 32 H 0.07 1.05 7.44 -51.93 -0.39 0.66 16 33 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 35 H 0.07 1.50 6.62 -51.93 -0.34 1.15 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 39 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.17 1.84 6.27 -52.48 -0.33 1.52 16 44 H 0.16 0.92 7.61 -52.49 -0.40 0.52 16 45 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 46 H 0.40 0.54 8.64 45.56 0.39 0.93 16 LS Contribution 371.65 15.07 5.60 5.60 Total: -1.00 -32.03 371.65 -8.11 -40.14 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.87 Total: 1.49 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.24 Total: -20.43 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.40 Total: -35.21 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.33 Total: -8.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.03 -8.11 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806177042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.857 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds