Wall clock time and date at job start Tue Mar 31 2020 16:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35977 * 117.00226 * 2 1 4 4 C 1.38718 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.38104 * 120.00451 * 180.02562 * 4 3 2 6 6 C 1.38726 * 120.00009 * 359.70837 * 5 4 3 7 7 O 1.35975 * 120.00393 * 180.29642 * 6 5 4 8 8 C 1.38679 * 119.99668 * 0.54752 * 6 5 4 9 9 C 1.50696 * 120.00146 * 179.74560 * 8 6 5 10 10 H 1.08999 * 109.46984 * 324.73115 * 9 8 6 11 11 C 1.53008 * 109.46920 * 84.72827 * 9 8 6 12 12 N 1.46499 * 109.47278 * 204.72666 * 9 8 6 13 13 C 1.34777 * 119.99665 * 155.27952 * 12 9 8 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 9 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 9 16 16 H 1.08994 * 109.47374 * 39.99639 * 15 13 12 17 17 N 1.46899 * 109.46954 * 159.99915 * 15 13 12 18 18 C 1.53003 * 109.47045 * 279.99176 * 15 13 12 19 19 C 1.53000 * 109.47286 * 174.99954 * 18 15 13 20 20 C 1.50701 * 109.47289 * 180.02562 * 19 18 15 21 21 H 1.08003 * 119.99592 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99954 * 180.02562 * 20 19 18 23 23 N 1.31505 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47338 * 60.00233 * 24 22 20 26 26 H 1.48504 * 109.47095 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47219 * 300.00334 * 24 22 20 28 28 C 1.38155 * 119.99907 * 359.47365 * 8 6 5 29 29 H 1.08993 * 109.47187 * 300.00394 * 1 2 3 30 30 H 1.08999 * 109.46883 * 60.00216 * 1 2 3 31 31 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99851 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00335 * 179.97438 * 5 4 3 34 34 H 0.96701 * 114.00143 * 270.25266 * 7 6 5 35 35 H 1.09000 * 109.47169 * 59.99791 * 11 9 8 36 36 H 1.08995 * 109.47066 * 180.02562 * 11 9 8 37 37 H 1.09005 * 109.46722 * 300.00150 * 11 9 8 38 38 H 0.97001 * 119.99790 * 334.99665 * 12 9 8 39 39 H 1.00903 * 111.00374 * 59.99775 * 17 15 13 40 40 H 1.00904 * 110.99967 * 183.94937 * 17 15 13 41 41 H 1.08994 * 109.47574 * 295.00663 * 18 15 13 42 42 H 1.09004 * 109.46944 * 55.00483 * 18 15 13 43 43 H 1.08994 * 109.47393 * 300.00821 * 19 18 15 44 44 H 1.09004 * 109.46697 * 60.00377 * 19 18 15 45 45 H 0.96998 * 120.00408 * 179.97438 * 23 22 20 46 46 H 1.08001 * 120.00137 * 180.27025 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2910 2.3750 0.0005 5 6 1.9179 3.6055 0.0000 6 6 3.3033 3.6781 0.0050 7 8 3.9207 4.8896 0.0106 8 6 4.0586 2.5150 -0.0009 9 6 5.5635 2.5938 -0.0012 10 1 5.8821 3.4535 -0.5906 11 6 6.0665 2.7460 1.4358 12 7 6.1165 1.3693 -0.5850 13 6 7.3415 1.3842 -1.1468 14 8 7.9839 2.4126 -1.1735 15 6 7.9129 0.1231 -1.7419 16 1 7.1274 -0.4181 -2.2692 17 7 8.9864 0.4686 -2.6832 18 6 8.4777 -0.7573 -0.6252 19 6 8.9446 -2.0903 -1.2135 20 6 9.5003 -2.9577 -0.1136 21 1 9.5183 -2.5946 0.9034 22 6 9.9858 -4.2147 -0.4057 23 7 9.9644 -4.6565 -1.6441 24 14 10.6740 -5.2901 0.9578 25 1 9.6182 -5.5400 1.9718 26 1 11.1272 -6.5839 0.3868 27 1 11.8230 -4.6018 1.5990 28 6 3.4313 1.2841 -0.0008 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2124 2.3185 0.0005 33 1 1.3298 4.5113 0.0000 34 1 4.0989 5.2443 -0.8712 35 1 5.7477 1.8863 2.0253 36 1 7.1549 2.8034 1.4356 37 1 5.6549 3.6571 1.8702 38 1 5.6026 0.5468 -0.5636 39 1 9.7273 0.9715 -2.2182 40 1 9.3425 -0.3555 -3.1439 41 1 9.3215 -0.2519 -0.1557 42 1 7.7034 -0.9404 0.1199 43 1 8.1007 -2.5957 -1.6831 44 1 9.7188 -1.9072 -1.9586 45 1 10.3062 -5.5406 -1.8497 46 1 4.0194 0.3783 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818213932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:43 Heat of formation + Delta-G solvation = -127.923649 kcal Electronic energy + Delta-G solvation = -27139.591257 eV Core-core repulsion = 23221.242389 eV Total energy + Delta-G solvation = -3918.348868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70957 -40.81335 -39.54376 -37.49502 -36.94382 -36.15198 -34.83678 -32.62812 -31.68431 -31.29288 -29.63404 -28.18918 -27.92727 -25.94035 -24.73929 -23.66333 -22.45415 -21.65399 -21.17672 -19.50904 -18.96624 -18.62346 -18.13778 -17.59116 -16.89791 -16.74910 -16.56675 -16.37830 -16.06598 -15.96706 -15.58839 -15.21303 -15.06210 -14.80214 -14.70254 -14.42800 -14.24106 -13.95953 -13.58177 -13.46923 -13.38721 -13.22108 -12.94978 -12.92633 -12.66625 -12.54400 -12.42345 -12.22703 -11.80638 -11.77166 -11.71072 -11.36036 -11.31695 -10.75555 -10.55593 -10.28098 -9.94660 -9.64746 -9.04842 -8.21221 -6.31641 0.14287 0.27110 1.39840 1.41411 1.49354 1.59650 2.05451 2.32852 2.40166 2.54205 3.12318 3.30795 3.46071 3.72202 3.75541 3.79215 4.08476 4.11499 4.18219 4.21858 4.23929 4.27761 4.42466 4.44411 4.50052 4.65925 4.69849 4.75919 4.80436 4.86189 4.88077 5.06067 5.08392 5.18477 5.25032 5.30226 5.46418 5.48500 5.58209 5.65748 5.80655 6.06360 6.21460 6.37992 6.46615 6.48412 6.83526 6.84524 7.18990 7.37342 8.89409 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012533 B = 0.002926 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.597519 B = 9565.580491 C =10930.507504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.188 4.188 5 C -0.098 4.098 6 C 0.073 3.927 7 O -0.501 6.501 8 C -0.082 4.082 9 C 0.195 3.805 10 H 0.090 0.910 11 C -0.150 4.150 12 N -0.719 5.719 13 C 0.531 3.469 14 O -0.565 6.565 15 C 0.080 3.920 16 H 0.107 0.893 17 N -0.829 5.829 18 C -0.121 4.121 19 C 0.031 3.969 20 C -0.547 4.547 21 H 0.054 0.946 22 C 0.006 3.994 23 N -0.926 5.926 24 Si 0.958 3.042 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.271 1.271 28 C -0.149 4.149 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.404 0.596 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.408 0.592 39 H 0.344 0.656 40 H 0.353 0.647 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.264 0.736 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 15.622 2.882 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.206 4.206 5 C -0.117 4.117 6 C 0.027 3.973 7 O -0.314 6.314 8 C -0.084 4.084 9 C 0.090 3.910 10 H 0.108 0.892 11 C -0.208 4.208 12 N -0.373 5.373 13 C 0.318 3.682 14 O -0.443 6.443 15 C -0.035 4.035 16 H 0.125 0.875 17 N -0.360 5.360 18 C -0.160 4.160 19 C -0.006 4.006 20 C -0.585 4.585 21 H 0.073 0.927 22 C -0.193 4.193 23 N -0.566 5.566 24 Si 0.783 3.217 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.196 1.196 28 C -0.168 4.168 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.073 0.927 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.403 16.389 2.961 27.915 hybrid contribution 0.872 -1.695 0.603 2.000 sum -21.531 14.693 3.565 26.309 Atomic orbital electron populations 1.23373 0.76228 1.05585 1.02538 1.86107 1.23666 1.26685 1.88561 1.19072 0.92000 0.85204 0.96756 1.21428 1.01522 0.90975 1.06724 1.21443 0.93130 0.98885 0.98212 1.18151 0.90577 0.84299 1.04243 1.84841 1.79841 1.31555 1.35129 1.19944 0.94467 0.93002 1.00953 1.19532 0.88290 0.87907 0.95235 0.89167 1.22062 1.00917 1.02960 0.94840 1.46174 1.17857 1.13625 1.59674 1.20679 0.81071 0.89926 0.76534 1.90617 1.60378 1.34448 1.58880 1.21408 0.96451 0.91872 0.93793 0.87472 1.58758 1.15584 1.29044 1.32613 1.22130 1.00057 0.96410 0.97444 1.18959 0.95148 0.91201 0.95334 1.21601 1.40907 1.00876 0.95092 0.92731 1.25858 0.96164 0.99410 0.97827 1.70047 1.47398 1.19262 1.19904 0.85602 0.78978 0.77811 0.79278 1.19261 1.20759 1.19608 1.20124 0.92286 0.97701 1.06714 0.91298 0.91265 0.86814 0.82286 0.82518 0.73754 0.92017 0.93249 0.90279 0.75325 0.84259 0.83224 0.93586 0.91742 0.98010 0.97842 0.92705 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.34 10.50 -93.29 -0.98 -7.32 16 3 C 0.12 2.20 6.69 22.49 0.15 2.35 16 4 C -0.19 -2.68 9.03 22.35 0.20 -2.48 16 5 C -0.10 -1.42 9.98 22.35 0.22 -1.20 16 6 C 0.07 1.32 6.68 22.49 0.15 1.47 16 7 O -0.50 -8.30 12.64 -93.27 -1.18 -9.48 16 8 C -0.08 -1.74 5.07 -19.78 -0.10 -1.84 16 9 C 0.19 4.75 2.50 44.25 0.11 4.86 16 10 H 0.09 2.38 7.13 -2.39 -0.02 2.37 16 11 C -0.15 -3.66 9.46 71.98 0.68 -2.98 16 12 N -0.72 -19.18 5.00 -446.09 -2.23 -21.41 16 13 C 0.53 17.62 7.04 87.66 0.62 18.24 16 14 O -0.57 -21.92 15.92 -3.04 -0.05 -21.97 16 15 C 0.08 2.75 3.21 44.17 0.14 2.89 16 16 H 0.11 3.44 8.14 -2.39 -0.02 3.43 16 17 N -0.83 -29.00 8.94 -171.81 -1.54 -30.53 16 18 C -0.12 -4.78 4.78 30.60 0.15 -4.64 16 19 C 0.03 1.52 4.74 29.85 0.14 1.67 16 20 C -0.55 -30.33 9.11 25.60 0.23 -30.10 16 21 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 22 C 0.01 0.34 5.46 84.66 0.46 0.80 16 23 N -0.93 -54.66 13.28 21.45 0.28 -54.38 16 24 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C -0.15 -3.17 9.17 22.36 0.21 -2.97 16 29 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 30 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.16 1.32 6.29 -2.91 -0.02 1.30 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.40 3.56 9.06 -74.06 -0.67 2.89 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.41 9.66 6.21 -92.71 -0.58 9.09 16 39 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 40 H 0.35 12.48 7.55 -89.69 -0.68 11.80 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.00 0.17 6.87 -2.38 -0.02 0.16 16 45 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.13 2.78 6.07 -2.91 -0.02 2.76 16 Total: -1.00 -71.22 382.19 -0.83 -72.06 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.65 Total: 39.95 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.48 Total: -12.65 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -3.48 Total: -106.32 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.21 Total: -38.76 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.22 -0.83 -72.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818213932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.866 kcal (2) G-P(sol) polarization free energy of solvation -71.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds