Wall clock time and date at job start Tue Mar 31 2020 16:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35986 * 117.00201 * 2 1 4 4 C 1.38713 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.38107 * 119.99965 * 180.02562 * 4 3 2 6 6 C 1.38722 * 120.00187 * 359.69299 * 5 4 3 7 7 O 1.35977 * 120.00264 * 180.29493 * 6 5 4 8 8 C 1.38677 * 119.99505 * 0.56302 * 6 5 4 9 9 C 1.50701 * 119.99943 * 179.74447 * 8 6 5 10 10 H 1.09004 * 109.47150 * 324.71956 * 9 8 6 11 11 C 1.52997 * 109.47247 * 84.71670 * 9 8 6 12 12 N 1.46498 * 109.47114 * 204.71637 * 9 8 6 13 13 C 1.34777 * 119.99828 * 154.72036 * 12 9 8 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 9 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 9 16 16 H 1.09002 * 109.46677 * 320.00686 * 15 13 12 17 17 N 1.46895 * 109.47575 * 200.00222 * 15 13 12 18 18 C 1.53002 * 109.47048 * 79.99919 * 15 13 12 19 19 C 1.53001 * 109.47228 * 185.00273 * 18 15 13 20 20 C 1.50693 * 109.46990 * 180.02562 * 19 18 15 21 21 H 1.07995 * 120.00457 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99994 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99445 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00232 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46685 * 90.00472 * 24 22 20 26 26 H 1.48501 * 109.47066 * 210.00621 * 24 22 20 27 27 H 1.48502 * 109.47322 * 330.00599 * 24 22 20 28 28 C 1.38159 * 120.00192 * 359.45983 * 8 6 5 29 29 H 1.08997 * 109.47095 * 300.00718 * 1 2 3 30 30 H 1.09001 * 109.46712 * 59.99863 * 1 2 3 31 31 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00043 * 359.97405 * 4 3 2 33 33 H 1.08000 * 120.00116 * 179.97438 * 5 4 3 34 34 H 0.96702 * 114.00298 * 270.26444 * 7 6 5 35 35 H 1.09003 * 109.47189 * 300.00333 * 11 9 8 36 36 H 1.09009 * 109.47238 * 60.00212 * 11 9 8 37 37 H 1.08997 * 109.47293 * 180.02562 * 11 9 8 38 38 H 0.97001 * 120.00384 * 335.00482 * 12 9 8 39 39 H 1.00902 * 110.99981 * 300.00025 * 17 15 13 40 40 H 1.00907 * 110.99558 * 63.95279 * 17 15 13 41 41 H 1.08997 * 109.47150 * 305.00850 * 18 15 13 42 42 H 1.09001 * 109.46651 * 65.00479 * 18 15 13 43 43 H 1.08995 * 109.46793 * 300.00292 * 19 18 15 44 44 H 1.08999 * 109.46867 * 59.99778 * 19 18 15 45 45 H 0.97007 * 119.99691 * 179.97438 * 23 22 20 46 46 H 1.07995 * 119.99748 * 180.27976 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0000 6 6 3.3033 3.6781 0.0054 7 8 3.9207 4.8896 0.0109 8 6 4.0585 2.5150 -0.0005 9 6 5.5635 2.5938 -0.0005 10 1 5.8823 3.4535 -0.5900 11 6 6.0662 2.7461 1.4364 12 7 6.1166 1.3693 -0.5842 13 6 7.3370 1.3868 -1.1558 14 8 7.9795 2.4151 -1.1823 15 6 7.9035 0.1286 -1.7618 16 1 7.6616 -0.7222 -1.1248 17 7 9.3624 0.2546 -1.8776 18 6 7.2982 -0.0858 -3.1505 19 6 7.7768 -1.4253 -3.7142 20 6 7.1811 -1.6362 -5.0822 21 1 6.5271 -0.8894 -5.5074 22 6 7.4720 -2.7822 -5.7916 23 7 8.2689 -3.6913 -5.2740 24 14 6.7331 -3.0440 -7.4872 25 1 7.6406 -2.4748 -8.5157 26 1 6.5580 -4.4982 -7.7316 27 1 5.4135 -2.3670 -7.5620 28 6 3.4313 1.2840 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2124 2.3185 0.0005 33 1 1.3298 4.5113 0.0000 34 1 4.0989 5.2443 -0.8709 35 1 5.6546 3.6572 1.8708 36 1 5.7474 1.8864 2.0260 37 1 7.1547 2.8035 1.4364 38 1 5.6028 0.5468 -0.5630 39 1 9.6124 1.0370 -2.4637 40 1 9.7919 0.3326 -0.9678 41 1 6.2108 -0.0905 -3.0762 42 1 7.6137 0.7205 -3.8127 43 1 8.8642 -1.4205 -3.7885 44 1 7.4614 -2.2316 -3.0519 45 1 8.4733 -4.4978 -5.7730 46 1 4.0195 0.3783 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818213933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:47 Heat of formation + Delta-G solvation = -101.207402 kcal Electronic energy + Delta-G solvation = -27257.084863 eV Core-core repulsion = 23339.894498 eV Total energy + Delta-G solvation = -3917.190365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90576 -39.77171 -38.81233 -36.53061 -35.54027 -34.98429 -32.78069 -31.66524 -30.53524 -30.05929 -28.87404 -27.40953 -26.39752 -24.41642 -23.60491 -22.67911 -21.10743 -20.41712 -19.91100 -18.63359 -18.19832 -17.18331 -16.76531 -16.18715 -16.10871 -15.94886 -15.71454 -15.45176 -14.59200 -14.54721 -14.46236 -14.37228 -14.16116 -13.72570 -13.41280 -13.33673 -12.82935 -12.74010 -12.54775 -12.29376 -12.14478 -11.98864 -11.77626 -11.53770 -11.40932 -11.13572 -10.88721 -10.67189 -10.64313 -10.53368 -10.10615 -9.77761 -9.37023 -9.32816 -9.06576 -8.97849 -8.35204 -8.32470 -8.18371 -5.92248 -3.94187 0.87185 0.98019 2.78717 2.93036 3.18527 3.28662 3.35801 3.41912 3.44857 3.96322 4.25945 4.40755 4.51310 4.72699 4.77462 4.82400 4.88264 5.03630 5.04800 5.09672 5.15191 5.17432 5.26555 5.43341 5.55057 5.55802 5.62243 5.63372 5.85557 5.87268 5.93882 6.03130 6.10339 6.20619 6.44690 6.52344 6.67471 7.00458 7.10802 7.37836 7.40338 7.60419 7.78104 7.82273 7.98170 8.15019 8.32406 8.50323 9.13769 9.68788 11.18692 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.003370 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.977648 B = 8306.231791 C =10141.889997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.128 3.872 4 C -0.195 4.195 5 C -0.100 4.100 6 C 0.076 3.924 7 O -0.493 6.493 8 C -0.073 4.073 9 C 0.188 3.812 10 H 0.099 0.901 11 C -0.153 4.153 12 N -0.729 5.729 13 C 0.486 3.514 14 O -0.553 6.553 15 C 0.078 3.922 16 H 0.098 0.902 17 N -0.806 5.806 18 C -0.095 4.095 19 C 0.031 3.969 20 C -0.522 4.522 21 H 0.051 0.949 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.888 3.112 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.388 0.612 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.402 0.598 39 H 0.348 0.652 40 H 0.334 0.666 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.035 0.965 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.154 13.233 14.951 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.083 3.917 4 C -0.214 4.214 5 C -0.118 4.118 6 C 0.031 3.969 7 O -0.303 6.303 8 C -0.074 4.074 9 C 0.083 3.917 10 H 0.117 0.883 11 C -0.211 4.211 12 N -0.383 5.383 13 C 0.272 3.728 14 O -0.430 6.430 15 C -0.038 4.038 16 H 0.116 0.884 17 N -0.334 5.334 18 C -0.133 4.133 19 C -0.006 4.006 20 C -0.560 4.560 21 H 0.070 0.930 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.716 3.284 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.239 0.761 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.559 12.803 15.154 24.608 hybrid contribution -1.191 0.575 -0.980 1.646 sum -15.751 13.378 14.174 25.059 Atomic orbital electron populations 1.23093 0.78174 1.04280 1.01288 1.86140 1.21528 1.26440 1.88461 1.18935 0.92068 0.84438 0.96260 1.21127 1.00243 0.91746 1.08299 1.21170 0.93622 0.97871 0.99178 1.18013 0.89941 0.84456 1.04529 1.84875 1.79806 1.31986 1.33606 1.20075 0.95553 0.92337 0.99411 1.19577 0.87250 0.89322 0.95563 0.88337 1.22100 1.01923 1.02373 0.94700 1.46439 1.19266 1.12651 1.59968 1.22771 0.80817 0.92842 0.76381 1.90640 1.59663 1.33990 1.58716 1.21848 0.89377 0.92606 0.99960 0.88429 1.59002 1.05688 1.50706 1.18015 1.21657 0.98371 1.02484 0.90832 1.19014 0.97946 0.89015 0.94612 1.21277 1.28727 1.03979 1.02035 0.93025 1.24985 0.95303 0.96179 0.97831 1.69977 1.36183 1.09285 1.37728 0.86660 0.79544 0.77174 0.84982 1.20728 1.21287 1.20035 1.20051 0.91514 0.97807 1.05768 0.92656 0.92505 0.87964 0.84936 0.84929 0.75609 0.91152 0.92389 0.91625 0.76117 0.83834 0.85455 0.92854 0.92863 0.94660 0.96854 0.93119 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.27 10.50 -19.70 -0.21 -3.48 16 3 C 0.13 1.36 6.68 -39.24 -0.26 1.10 16 4 C -0.20 -1.73 9.03 -39.45 -0.36 -2.09 16 5 C -0.10 -0.89 9.98 -39.45 -0.39 -1.28 16 6 C 0.08 0.77 6.68 -39.24 -0.26 0.51 16 7 O -0.49 -4.57 12.64 -19.67 -0.25 -4.82 16 8 C -0.07 -0.80 5.07 -104.49 -0.53 -1.33 16 9 C 0.19 2.25 2.50 -69.08 -0.17 2.08 16 10 H 0.10 1.31 7.13 -51.93 -0.37 0.94 16 11 C -0.15 -1.71 9.47 37.16 0.35 -1.36 16 12 N -0.73 -9.42 4.99 -54.93 -0.27 -9.70 16 13 C 0.49 7.64 7.04 -10.98 -0.08 7.56 16 14 O -0.55 -10.01 15.91 5.55 0.09 -9.92 16 15 C 0.08 1.31 3.15 -68.86 -0.22 1.10 16 16 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 17 N -0.81 -13.66 8.44 -5.65 -0.05 -13.71 16 18 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 19 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 20 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 24 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.13 -1.47 9.17 -39.45 -0.36 -1.83 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.39 2.18 9.06 45.56 0.41 2.59 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.66 6.21 -40.82 -0.25 4.41 16 39 H 0.35 5.97 8.58 -39.29 -0.34 5.63 16 40 H 0.33 4.91 9.06 -39.29 -0.36 4.55 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.14 1.42 6.07 -52.49 -0.32 1.10 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -34.57 384.14 -7.25 -41.82 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.10 Total: 12.81 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.96 Total: -9.33 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.41 Total: -49.67 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.37 Total: -18.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.57 -7.25 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818213933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.391 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds