Wall clock time and date at job start Tue Mar 31 2020 16:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99730 * 2 1 3 5 5 O 1.20825 * 119.99963 * 119.99623 * 4 2 1 6 6 O 1.34225 * 119.99990 * 300.00183 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.46946 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00108 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99642 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99881 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47197 * 89.99900 * 11 10 8 13 13 H 1.07997 * 120.00189 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99854 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00046 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99927 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47081 * 90.00056 * 16 14 12 18 18 H 1.48501 * 109.46933 * 209.99954 * 16 14 12 19 19 H 1.48497 * 109.46751 * 330.00050 * 16 14 12 20 20 C 1.46501 * 120.00190 * 359.97438 * 10 8 7 21 21 C 1.53001 * 109.47095 * 90.00352 * 20 10 8 22 22 C 1.47196 * 109.47234 * 179.97438 * 21 20 10 23 23 N 8.51249 * 121.25439 * 120.99551 * 2 1 3 24 24 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 25 25 C 1.53781 * 113.61476 * 157.49826 * 24 2 1 26 26 C 1.53779 * 87.07812 * 220.01608 * 25 24 2 27 27 C 1.53776 * 113.61550 * 59.99962 * 24 2 1 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47173 * 299.99484 * 7 6 4 32 32 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 33 33 H 1.08997 * 109.47133 * 209.99958 * 11 10 8 34 34 H 1.09005 * 109.46743 * 329.99721 * 11 10 8 35 35 H 0.96991 * 119.99815 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46863 * 209.99841 * 20 10 8 37 37 H 1.09000 * 109.47286 * 330.00166 * 20 10 8 38 38 H 1.09002 * 109.47079 * 300.00231 * 21 20 10 39 39 H 1.09000 * 109.47205 * 59.99764 * 21 20 10 40 40 H 1.08997 * 112.84405 * 288.80059 * 24 2 1 41 41 H 1.08993 * 113.61731 * 334.56827 * 25 24 2 42 42 H 1.08999 * 113.61144 * 105.46995 * 25 24 2 43 43 H 1.08997 * 113.61529 * 270.88346 * 26 25 24 44 44 H 1.09006 * 113.69033 * 139.99076 * 26 25 24 45 45 H 1.09003 * 113.61248 * 254.53555 * 27 24 2 46 46 H 1.09003 * 113.61486 * 25.42978 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7270 -1.6927 1.1196 6 8 1.7081 -0.2517 2.4495 7 6 2.2269 -0.9862 3.5897 8 6 1.7619 -0.3296 4.8640 9 8 1.0627 0.6601 4.8160 10 7 2.1241 -0.8418 6.0568 11 6 1.6716 -0.2038 7.2957 12 6 0.3571 -0.8063 7.7199 13 1 -0.0963 -1.5860 7.1259 14 6 -0.2674 -0.3612 8.8658 15 7 -1.4149 -0.8866 9.2358 16 14 0.5165 0.9880 9.8928 17 1 0.0407 2.3119 9.4171 18 1 0.1381 0.8087 11.3175 19 1 1.9938 0.9160 9.7600 20 6 2.9692 -2.0370 6.1147 21 6 4.4412 -1.6203 6.1350 22 6 5.2904 -2.8212 6.1938 23 7 5.9466 -3.7475 6.2380 24 6 2.0400 -0.7213 -1.2493 25 6 3.4727 -0.3277 -1.6461 26 6 2.9921 -0.3574 -3.1066 27 6 1.5811 -0.0724 -2.5657 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8626 -2.0131 3.5566 32 1 3.3163 -0.9859 3.5569 33 1 2.4135 -0.3629 8.0782 34 1 1.5440 0.8656 7.1280 35 1 -1.8543 -0.5732 10.0416 36 1 2.7389 -2.6013 7.0184 37 1 2.7796 -2.6589 5.2398 38 1 4.6715 -1.0559 5.2313 39 1 4.6308 -0.9985 7.0099 40 1 1.8759 -1.7982 -1.2128 41 1 3.7639 0.6647 -1.3023 42 1 4.2151 -1.0916 -1.4151 43 1 3.0896 -1.3351 -3.5785 44 1 3.3969 0.4497 -3.7173 45 1 0.7965 -0.6301 -3.0772 46 1 1.3552 0.9900 -2.4734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838391641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:10 Heat of formation + Delta-G solvation = -78.292074 kcal Electronic energy + Delta-G solvation = -27095.508813 eV Core-core repulsion = 23179.312131 eV Total energy + Delta-G solvation = -3916.196682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90757 -39.55086 -38.80366 -36.98849 -36.33147 -35.38228 -33.35657 -32.87031 -31.11608 -29.56761 -27.29371 -26.48134 -25.52247 -24.21099 -23.86547 -22.33405 -20.62222 -19.67740 -18.89262 -17.87435 -17.76246 -16.99611 -16.83561 -16.56221 -16.26111 -15.72400 -15.31392 -15.09045 -14.83940 -14.64272 -14.21651 -13.81319 -13.53980 -13.36258 -12.99080 -12.85941 -12.75084 -12.63594 -12.57371 -12.53778 -12.34409 -12.19078 -11.89765 -11.87196 -11.65733 -11.50211 -11.15724 -11.05826 -10.83992 -10.70274 -10.65993 -10.62057 -10.44724 -10.33114 -10.26902 -9.65209 -9.26179 -8.66714 -8.04988 -6.16081 -4.16539 2.12856 2.35338 2.64632 2.74006 3.02104 3.23575 3.28685 3.31728 3.50060 4.01910 4.22767 4.29591 4.32164 4.37931 4.55947 4.64838 4.71944 4.84332 4.91462 4.93339 5.03564 5.04498 5.10317 5.16205 5.17733 5.35242 5.42361 5.44097 5.45466 5.56877 5.62669 5.65271 5.70045 5.76634 5.93370 5.95546 6.00654 6.20446 6.31678 6.50731 6.77664 7.05394 7.48664 7.50222 7.66440 7.90196 8.35359 8.65092 8.87204 9.42567 10.97066 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013078 B = 0.003050 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.548673 B = 9178.923365 C =10803.032754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 H 0.109 0.891 4 C 0.464 3.536 5 O -0.508 6.508 6 O -0.328 6.328 7 C 0.046 3.954 8 C 0.512 3.488 9 O -0.508 6.508 10 N -0.588 5.588 11 C 0.216 3.784 12 C -0.535 4.535 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.112 3.888 21 C -0.051 4.051 22 C 0.215 3.785 23 N -0.439 5.439 24 C -0.096 4.096 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.133 4.133 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 2.451 -19.827 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 H 0.127 0.873 4 C 0.307 3.693 5 O -0.396 6.396 6 O -0.243 6.243 7 C -0.031 4.031 8 C 0.297 3.703 9 O -0.382 6.382 10 N -0.321 5.321 11 C 0.097 3.903 12 C -0.573 4.573 13 H 0.094 0.906 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.014 4.014 21 C -0.092 4.092 22 C -0.104 4.104 23 N -0.116 5.116 24 C -0.114 4.114 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.170 4.170 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.796 1.332 -19.620 21.969 hybrid contribution 0.142 0.758 0.807 1.116 sum 9.937 2.090 -18.812 21.378 Atomic orbital electron populations 1.21778 0.91629 1.03188 1.03792 1.21119 0.98525 1.00559 0.88846 0.87282 1.23863 0.77416 0.83055 0.84945 1.90650 1.35755 1.25917 1.87316 1.86577 1.69034 1.54538 1.14135 1.22924 0.99969 0.96416 0.83808 1.19765 0.81516 0.85064 0.83978 1.90737 1.35773 1.25310 1.86381 1.47809 1.49392 1.28180 1.06702 1.19786 0.95997 0.94577 0.79983 1.21287 1.04234 1.22350 1.09430 0.90583 1.24856 0.94611 0.96227 0.97195 1.69887 1.16024 1.42482 1.24808 0.86871 0.80130 0.83001 0.79784 1.19830 1.21069 1.18940 1.21428 0.86462 0.88307 1.05203 1.19877 0.93013 0.90028 1.06329 1.28983 0.93821 0.94526 0.93033 1.81224 1.10128 1.11163 1.09088 1.22511 0.96636 1.00594 0.91692 1.22964 0.96560 1.01890 0.96003 1.22795 0.96717 1.01960 0.96535 1.22953 0.97197 1.01159 0.95731 0.90558 0.90931 0.92033 0.88387 0.88724 0.94592 0.94046 0.92432 0.87949 0.90275 0.87578 0.86403 0.88175 0.90169 0.91085 0.90200 0.91410 0.91190 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.93 37.16 0.33 -0.96 16 2 C -0.07 -0.67 2.58 -91.77 -0.24 -0.91 16 3 H 0.11 0.89 7.94 -51.93 -0.41 0.48 16 4 C 0.46 5.95 7.25 36.00 0.26 6.21 16 5 O -0.51 -7.30 15.59 -18.75 -0.29 -7.60 16 6 O -0.33 -4.86 9.66 -45.89 -0.44 -5.31 16 7 C 0.05 0.65 4.50 36.01 0.16 0.81 16 8 C 0.51 9.22 7.75 -10.98 -0.09 9.14 16 9 O -0.51 -11.52 16.08 -14.10 -0.23 -11.75 16 10 N -0.59 -10.16 2.46 -175.06 -0.43 -10.59 16 11 C 0.22 4.63 4.23 -5.19 -0.02 4.61 16 12 C -0.53 -14.20 9.94 -34.44 -0.34 -14.55 16 13 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 15 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 16 Si 0.88 20.23 27.47 -169.99 -4.67 15.56 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 20 C 0.11 1.41 5.17 -4.04 -0.02 1.39 16 21 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 22 C 0.21 2.50 15.43 -20.76 -0.32 2.18 16 23 N -0.44 -6.37 18.54 42.15 0.78 -5.59 16 24 C -0.10 -0.81 2.54 -89.81 -0.23 -1.04 16 25 C -0.14 -1.10 7.60 -25.92 -0.20 -1.29 16 26 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 27 C -0.13 -0.86 6.68 -25.92 -0.17 -1.03 16 28 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.07 0.49 7.45 -51.93 -0.39 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.27 7.39 -51.93 -0.38 0.88 16 32 H 0.09 1.05 7.18 -51.93 -0.37 0.68 16 33 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 37 H 0.08 0.86 6.44 -51.93 -0.33 0.52 16 38 H 0.11 0.81 7.22 -51.93 -0.37 0.44 16 39 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.96 7.86 -51.93 -0.41 0.55 16 41 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -34.62 389.59 -7.19 -41.81 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.20 Total: -1.39 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.36 Total: 4.69 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 1.13 Total: -41.89 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.96 Total: -24.65 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.62 -7.19 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838391641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.484 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds