Wall clock time and date at job start Tue Mar 31 2020 16:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46931 * 2 1 4 4 C 1.50700 * 109.46899 * 240.00894 * 2 1 3 5 5 O 1.20830 * 119.99342 * 239.99531 * 4 2 1 6 6 O 1.34225 * 120.00758 * 59.99725 * 4 2 1 7 7 C 1.45195 * 117.00506 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47233 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00147 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00097 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00330 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47173 * 89.99983 * 11 10 8 13 13 H 1.08002 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00249 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00098 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47295 * 59.99730 * 16 14 12 18 18 H 1.48498 * 109.47024 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46938 * 299.99679 * 16 14 12 20 20 C 1.46502 * 120.00102 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.47105 * 89.99489 * 20 10 8 22 22 C 1.47203 * 109.46860 * 180.02562 * 21 20 10 23 23 N 8.51249 * 104.01044 * 229.05400 * 2 1 3 24 24 C 1.52995 * 109.47340 * 120.00472 * 2 1 3 25 25 C 1.53785 * 113.69093 * 200.93689 * 24 2 1 26 26 C 1.53779 * 87.08093 * 139.99088 * 25 24 2 27 27 C 1.53781 * 113.61293 * 298.47313 * 24 2 1 28 28 H 1.08996 * 109.46987 * 59.99262 * 1 2 3 29 29 H 1.08994 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46687 * 299.99859 * 1 2 3 31 31 H 1.09000 * 109.47177 * 299.99812 * 7 6 4 32 32 H 1.08999 * 109.46854 * 59.99994 * 7 6 4 33 33 H 1.09000 * 109.47230 * 210.00290 * 11 10 8 34 34 H 1.08999 * 109.47087 * 330.00518 * 11 10 8 35 35 H 0.97001 * 119.99512 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47601 * 210.00166 * 20 10 8 37 37 H 1.09002 * 109.47027 * 329.99912 * 20 10 8 38 38 H 1.08996 * 109.47261 * 300.00260 * 21 20 10 39 39 H 1.09002 * 109.46833 * 60.00304 * 21 20 10 40 40 H 1.09002 * 112.85043 * 69.66572 * 24 2 1 41 41 H 1.09003 * 113.60734 * 254.54208 * 25 24 2 42 42 H 1.08996 * 113.61146 * 25.43706 * 25 24 2 43 43 H 1.08994 * 113.61314 * 220.01752 * 26 25 24 44 44 H 1.09005 * 113.69135 * 89.12376 * 26 25 24 45 45 H 1.09005 * 113.61302 * 334.47929 * 27 24 2 46 46 H 1.08993 * 113.62030 * 105.38774 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.7270 -1.6926 -1.1198 6 8 1.7081 -0.2516 -2.4497 7 6 2.2267 -0.9860 -3.5898 8 6 1.7618 -0.3294 -4.8640 9 8 1.0625 0.6604 -4.8160 10 7 2.1238 -0.8414 -6.0570 11 6 1.6723 -0.2028 -7.2957 12 6 2.6776 0.8364 -7.7204 13 1 3.5644 1.0041 -7.1272 14 6 2.4654 1.5732 -8.8664 15 7 1.3858 1.3686 -9.5891 16 14 3.7119 2.8609 -9.3932 17 1 5.0275 2.2115 -9.6228 18 1 3.2542 3.5083 -10.6488 19 1 3.8451 3.8860 -8.3272 20 6 2.9689 -2.0367 -6.1151 21 6 2.0853 -3.2856 -6.1352 22 6 2.9345 -4.4866 -6.1929 23 7 3.5909 -5.4127 -6.2384 24 6 2.0401 -0.7213 1.2491 25 6 3.4861 -0.3576 1.6256 26 6 3.0227 -0.3641 3.0919 27 6 1.6121 -0.0511 2.5654 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.3162 -0.9857 -3.5571 32 1 1.8625 -2.0128 -3.5567 33 1 1.5752 -0.9555 -8.0781 34 1 0.7064 0.2735 -7.1278 35 1 1.2363 1.8872 -10.3950 36 1 3.5778 -2.0078 -7.0187 37 1 3.6184 -2.0653 -5.2401 38 1 1.4765 -3.3146 -5.2315 39 1 1.4357 -3.2570 -7.0101 40 1 1.8521 -1.7947 1.2245 41 1 4.2080 -1.1403 1.3922 42 1 3.7958 0.6250 1.2698 43 1 3.4539 0.4390 3.6895 44 1 3.1030 -1.3392 3.5723 45 1 1.4096 1.0154 2.4666 46 1 0.8213 -0.5862 3.0909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838391642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:13 Heat of formation + Delta-G solvation = -83.281269 kcal Electronic energy + Delta-G solvation = -27057.131907 eV Core-core repulsion = 23140.718877 eV Total energy + Delta-G solvation = -3916.413029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87936 -39.46401 -38.74818 -36.91885 -36.28977 -35.27739 -33.35790 -32.94103 -30.92367 -29.32259 -26.84787 -26.43850 -25.52374 -24.13929 -23.90209 -22.62806 -20.60473 -19.66957 -18.87474 -17.82235 -17.66320 -16.85570 -16.63213 -16.44386 -16.12299 -15.64868 -15.29162 -15.08995 -14.75858 -14.60943 -14.19388 -13.84458 -13.56231 -13.19971 -12.93349 -12.90193 -12.73893 -12.64488 -12.48810 -12.36852 -12.18865 -12.08221 -11.88592 -11.77671 -11.50166 -11.33555 -11.06966 -10.99101 -10.83115 -10.69912 -10.65685 -10.62320 -10.43432 -10.30753 -10.23625 -9.78720 -9.14374 -8.50931 -7.97397 -6.13044 -4.18074 2.15101 2.40400 2.70577 2.79800 3.11016 3.28479 3.33259 3.36423 3.59717 4.08777 4.24561 4.30937 4.37559 4.40376 4.57614 4.67982 4.80049 4.90204 4.92547 5.00719 5.04734 5.08886 5.14146 5.20938 5.22932 5.42509 5.43480 5.44938 5.45952 5.56169 5.63300 5.69745 5.75287 5.79198 5.96060 5.98204 6.00229 6.21737 6.35884 6.82557 7.25447 7.33118 7.55644 7.69565 7.82611 8.08750 8.11865 8.70999 8.87916 9.47592 10.95119 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003044 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.560272 B = 9197.024181 C =10699.090168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 H 0.110 0.890 4 C 0.464 3.536 5 O -0.509 6.509 6 O -0.328 6.328 7 C 0.045 3.955 8 C 0.509 3.491 9 O -0.509 6.509 10 N -0.592 5.592 11 C 0.246 3.754 12 C -0.532 4.532 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.113 3.887 21 C -0.051 4.051 22 C 0.216 3.784 23 N -0.442 5.442 24 C -0.095 4.095 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.133 4.133 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -5.006 20.356 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 H 0.128 0.872 4 C 0.307 3.693 5 O -0.397 6.397 6 O -0.243 6.243 7 C -0.032 4.032 8 C 0.294 3.706 9 O -0.383 6.383 10 N -0.326 5.326 11 C 0.128 3.872 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.014 4.014 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.119 5.119 24 C -0.114 4.114 25 C -0.174 4.174 26 C -0.180 4.180 27 C -0.170 4.170 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.110 -6.066 20.113 21.008 hybrid contribution 0.622 0.858 -0.544 1.192 sum 0.512 -5.208 19.569 20.257 Atomic orbital electron populations 1.21765 0.91717 1.03019 1.03766 1.21119 0.98456 1.00667 0.88891 0.87238 1.23854 0.77454 0.83023 0.84990 1.90649 1.35688 1.26018 1.87345 1.86577 1.68936 1.54619 1.14132 1.22965 1.00367 0.95932 0.83960 1.19756 0.81836 0.85055 0.83984 1.90739 1.36679 1.24528 1.86387 1.48160 1.50179 1.26888 1.07324 1.19411 0.96714 0.92882 0.78163 1.21369 1.06969 1.20190 1.08589 0.92340 1.24910 0.95643 0.97067 0.96254 1.69906 1.26063 1.41135 1.16047 0.86559 0.81263 0.81714 0.77920 1.20219 1.21163 1.20117 1.21396 0.92375 0.82869 1.04725 1.19889 0.96550 0.86394 1.06398 1.29042 0.93912 0.94362 0.92896 1.81214 1.09757 1.11727 1.09247 1.22497 0.96714 1.00445 0.91718 1.22962 0.96451 1.02062 0.95942 1.22798 0.96738 1.01902 0.96579 1.22954 0.97244 1.01051 0.95781 0.90604 0.92127 0.90959 0.88601 0.88826 0.94324 0.93343 0.92531 0.88203 0.90657 0.87682 0.86205 0.88263 0.91052 0.90140 0.91408 0.90212 0.89772 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.94 37.16 0.33 -0.88 16 2 C -0.07 -0.69 2.56 -91.77 -0.23 -0.92 16 3 H 0.11 0.95 7.98 -51.93 -0.41 0.53 16 4 C 0.46 6.02 7.23 36.01 0.26 6.28 16 5 O -0.51 -7.40 15.58 -18.75 -0.29 -7.69 16 6 O -0.33 -4.95 9.66 -45.89 -0.44 -5.39 16 7 C 0.05 0.65 4.50 36.01 0.16 0.81 16 8 C 0.51 9.44 7.75 -10.99 -0.09 9.36 16 9 O -0.51 -11.89 16.08 -14.11 -0.23 -12.12 16 10 N -0.59 -10.62 2.46 -175.06 -0.43 -11.05 16 11 C 0.25 5.70 5.16 -5.20 -0.03 5.67 16 12 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.11 1.47 5.17 -4.04 -0.02 1.45 16 21 C -0.05 -0.53 6.03 -29.51 -0.18 -0.70 16 22 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 23 N -0.44 -6.61 18.54 42.16 0.78 -5.83 16 24 C -0.10 -0.81 2.51 -89.81 -0.23 -1.04 16 25 C -0.14 -1.16 7.54 -25.92 -0.20 -1.35 16 26 C -0.14 -0.97 8.08 -25.92 -0.21 -1.18 16 27 C -0.13 -0.87 6.75 -25.92 -0.17 -1.04 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 7.50 -51.93 -0.39 0.07 16 31 H 0.10 1.25 7.39 -51.93 -0.38 0.87 16 32 H 0.09 1.10 7.18 -51.93 -0.37 0.72 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 38 H 0.11 0.89 7.22 -51.93 -0.38 0.52 16 39 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 0.94 7.91 -51.93 -0.41 0.53 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.66 7.99 -51.93 -0.41 0.24 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -33.40 393.31 -7.55 -40.95 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -7.24 Total: -2.48 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.34 Total: 6.10 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 1.09 Total: -41.25 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.96 Total: -25.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.40 -7.55 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838391642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.329 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds