Wall clock time and date at job start Tue Mar 31 2020 16:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46931 * 2 1 4 4 C 1.50700 * 109.46899 * 240.00894 * 2 1 3 5 5 O 1.20830 * 119.99342 * 239.99531 * 4 2 1 6 6 O 1.34225 * 120.00758 * 59.99725 * 4 2 1 7 7 C 1.45195 * 117.00506 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47233 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00147 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00097 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00330 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47173 * 89.99983 * 11 10 8 13 13 H 1.08002 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00249 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99751 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00098 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47295 * 59.99730 * 16 14 12 18 18 H 1.48498 * 109.47024 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46938 * 299.99679 * 16 14 12 20 20 C 1.46502 * 120.00102 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.47105 * 89.99489 * 20 10 8 22 22 C 1.47203 * 109.46860 * 180.02562 * 21 20 10 23 23 N 8.51249 * 104.01044 * 229.05400 * 2 1 3 24 24 C 1.52995 * 109.47340 * 120.00472 * 2 1 3 25 25 C 1.53785 * 113.69093 * 200.93689 * 24 2 1 26 26 C 1.53779 * 87.08093 * 139.99088 * 25 24 2 27 27 C 1.53781 * 113.61293 * 298.47313 * 24 2 1 28 28 H 1.08996 * 109.46987 * 59.99262 * 1 2 3 29 29 H 1.08994 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46687 * 299.99859 * 1 2 3 31 31 H 1.09000 * 109.47177 * 299.99812 * 7 6 4 32 32 H 1.08999 * 109.46854 * 59.99994 * 7 6 4 33 33 H 1.09000 * 109.47230 * 210.00290 * 11 10 8 34 34 H 1.08999 * 109.47087 * 330.00518 * 11 10 8 35 35 H 0.97001 * 119.99512 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47601 * 210.00166 * 20 10 8 37 37 H 1.09002 * 109.47027 * 329.99912 * 20 10 8 38 38 H 1.08996 * 109.47261 * 300.00260 * 21 20 10 39 39 H 1.09002 * 109.46833 * 60.00304 * 21 20 10 40 40 H 1.09002 * 112.85043 * 69.66572 * 24 2 1 41 41 H 1.09003 * 113.60734 * 254.54208 * 25 24 2 42 42 H 1.08996 * 113.61146 * 25.43706 * 25 24 2 43 43 H 1.08994 * 113.61314 * 220.01752 * 26 25 24 44 44 H 1.09005 * 113.69135 * 89.12376 * 26 25 24 45 45 H 1.09005 * 113.61302 * 334.47929 * 27 24 2 46 46 H 1.08993 * 113.62030 * 105.38774 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.7270 -1.6926 -1.1198 6 8 1.7081 -0.2516 -2.4497 7 6 2.2267 -0.9860 -3.5898 8 6 1.7618 -0.3294 -4.8640 9 8 1.0625 0.6604 -4.8160 10 7 2.1238 -0.8414 -6.0570 11 6 1.6723 -0.2028 -7.2957 12 6 2.6776 0.8364 -7.7204 13 1 3.5644 1.0041 -7.1272 14 6 2.4654 1.5732 -8.8664 15 7 1.3858 1.3686 -9.5891 16 14 3.7119 2.8609 -9.3932 17 1 5.0275 2.2115 -9.6228 18 1 3.2542 3.5083 -10.6488 19 1 3.8451 3.8860 -8.3272 20 6 2.9689 -2.0367 -6.1151 21 6 2.0853 -3.2856 -6.1352 22 6 2.9345 -4.4866 -6.1929 23 7 3.5909 -5.4127 -6.2384 24 6 2.0401 -0.7213 1.2491 25 6 3.4861 -0.3576 1.6256 26 6 3.0227 -0.3641 3.0919 27 6 1.6121 -0.0511 2.5654 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.3162 -0.9857 -3.5571 32 1 1.8625 -2.0128 -3.5567 33 1 1.5752 -0.9555 -8.0781 34 1 0.7064 0.2735 -7.1278 35 1 1.2363 1.8872 -10.3950 36 1 3.5778 -2.0078 -7.0187 37 1 3.6184 -2.0653 -5.2401 38 1 1.4765 -3.3146 -5.2315 39 1 1.4357 -3.2570 -7.0101 40 1 1.8521 -1.7947 1.2245 41 1 4.2080 -1.1403 1.3922 42 1 3.7958 0.6250 1.2698 43 1 3.4539 0.4390 3.6895 44 1 3.1030 -1.3392 3.5723 45 1 1.4096 1.0154 2.4666 46 1 0.8213 -0.5862 3.0909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838391642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:12 Heat of formation + Delta-G solvation = -100.921071 kcal Electronic energy + Delta-G solvation = -27057.896826 eV Core-core repulsion = 23140.718877 eV Total energy + Delta-G solvation = -3917.177949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90583 -40.74122 -39.60869 -38.06182 -37.40464 -36.70707 -34.88885 -34.07357 -32.23733 -30.72679 -28.47147 -27.10673 -26.11704 -25.38608 -25.07620 -24.07283 -21.49758 -20.37227 -20.22381 -18.96441 -18.73099 -18.39285 -17.95475 -17.69701 -17.36570 -16.90267 -16.30444 -16.04437 -15.94532 -15.77688 -15.53024 -14.88714 -14.76659 -14.40439 -14.13862 -13.89343 -13.67454 -13.62163 -13.59192 -13.44034 -13.32820 -13.20075 -13.00615 -12.96217 -12.74533 -12.52591 -12.49283 -12.19369 -12.18376 -12.04488 -11.74897 -11.68516 -11.51914 -11.38177 -11.10202 -11.02954 -10.68224 -10.57892 -9.58345 -8.18342 -6.30294 1.14652 1.30542 1.41723 1.44183 1.50897 1.58041 1.78828 1.81374 2.32426 2.45783 3.03527 3.14304 3.49836 3.56383 3.67133 3.70974 3.85622 3.97302 3.98762 4.02208 4.08878 4.12363 4.30264 4.35030 4.39857 4.51185 4.78478 4.81653 4.89209 4.92356 4.94089 5.00249 5.04382 5.05074 5.13909 5.17491 5.26693 5.32200 5.36414 5.41894 5.56207 5.64429 5.83267 6.11155 6.53832 6.58886 6.70437 6.78433 7.25371 7.42247 8.88500 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.003044 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.560272 B = 9197.024181 C =10699.090168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 H 0.120 0.880 4 C 0.463 3.537 5 O -0.526 6.526 6 O -0.347 6.347 7 C 0.052 3.948 8 C 0.506 3.494 9 O -0.567 6.567 10 N -0.590 5.590 11 C 0.260 3.740 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.108 3.892 21 C -0.039 4.039 22 C 0.245 3.755 23 N -0.487 5.487 24 C -0.097 4.097 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.123 4.123 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.042 0.958 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -5.299 22.094 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 H 0.138 0.862 4 C 0.308 3.692 5 O -0.415 6.415 6 O -0.263 6.263 7 C -0.024 4.024 8 C 0.294 3.706 9 O -0.446 6.446 10 N -0.322 5.322 11 C 0.140 3.860 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.782 3.218 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.017 4.017 21 C -0.080 4.080 22 C -0.073 4.073 23 N -0.165 5.165 24 C -0.115 4.115 25 C -0.182 4.182 26 C -0.176 4.176 27 C -0.160 4.160 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.504 -6.407 21.864 22.789 hybrid contribution 0.442 0.937 -1.066 1.487 sum 0.946 -5.470 20.798 21.526 Atomic orbital electron populations 1.21757 0.90722 1.03211 1.04164 1.21295 0.99206 1.00869 0.87552 0.86243 1.24545 0.76885 0.82891 0.84920 1.90635 1.36558 1.26902 1.87395 1.86592 1.69424 1.55338 1.14947 1.22907 1.01168 0.96561 0.81792 1.20462 0.80649 0.84281 0.85239 1.90710 1.39318 1.27217 1.87309 1.47995 1.50388 1.27957 1.05823 1.18900 0.94303 0.92510 0.80297 1.21720 1.07249 1.20880 1.08441 0.92764 1.25697 0.97337 0.99025 0.96546 1.70008 1.27619 1.42243 1.16508 0.85627 0.79587 0.79221 0.77347 1.18861 1.20733 1.20477 1.21623 0.92371 0.81847 1.05814 1.19845 0.95841 0.84095 1.08244 1.29123 0.92880 0.93890 0.91381 1.81257 1.11074 1.13232 1.10977 1.22500 0.96950 0.99939 0.92147 1.23017 0.96099 1.01582 0.97517 1.22790 0.96804 1.02458 0.95511 1.22943 0.97367 1.01612 0.94073 0.92188 0.92056 0.88543 0.86890 0.85618 0.93964 0.97349 0.92494 0.88829 0.87979 0.84917 0.85428 0.89336 0.92666 0.89983 0.90474 0.89962 0.88683 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.94 71.98 0.64 -1.49 16 2 C -0.07 -1.24 2.56 -11.54 -0.03 -1.27 16 3 H 0.12 1.88 7.98 -2.38 -0.02 1.86 16 4 C 0.46 11.47 7.23 71.24 0.52 11.98 16 5 O -0.53 -14.54 15.58 21.95 0.34 -14.19 16 6 O -0.35 -10.18 9.66 -45.01 -0.43 -10.61 16 7 C 0.05 1.41 4.50 71.24 0.32 1.73 16 8 C 0.51 18.63 7.75 87.66 0.68 19.31 16 9 O -0.57 -27.23 16.08 15.76 0.25 -26.97 16 10 N -0.59 -20.84 2.46 -826.16 -2.03 -22.87 16 11 C 0.26 12.26 5.16 85.63 0.44 12.70 16 12 C -0.54 -28.89 9.39 25.60 0.24 -28.65 16 13 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 14 C 0.01 0.73 5.46 84.66 0.46 1.20 16 15 N -0.92 -52.75 13.29 21.45 0.28 -52.47 16 16 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.11 2.60 5.17 86.38 0.45 3.05 16 21 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 22 C 0.24 5.45 15.43 89.44 1.38 6.83 16 23 N -0.49 -13.88 18.54 20.01 0.37 -13.50 16 24 C -0.10 -1.49 2.51 -10.27 -0.03 -1.51 16 25 C -0.14 -2.27 7.54 31.12 0.23 -2.03 16 26 C -0.14 -1.59 8.08 31.12 0.25 -1.34 16 27 C -0.12 -1.27 6.75 31.12 0.21 -1.06 16 28 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.98 7.50 -2.39 -0.02 0.97 16 31 H 0.11 2.68 7.39 -2.39 -0.02 2.66 16 32 H 0.13 2.55 7.18 -2.39 -0.02 2.54 16 33 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.01 0.46 7.42 -2.39 -0.02 0.44 16 35 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 37 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 38 H 0.13 1.77 7.22 -2.39 -0.02 1.75 16 39 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.09 1.56 7.91 -2.39 -0.02 1.54 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.24 7.99 -2.39 -0.02 1.22 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.09 0.81 8.10 -2.38 -0.02 0.79 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -74.47 393.31 7.73 -66.74 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.97 Total: 9.87 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 5.94 Total: 18.91 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.37 Total: -88.85 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: 0.16 Total: -51.78 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.47 7.73 -66.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838391642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.180 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds