Wall clock time and date at job start Tue Mar 31 2020 16:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34631 * 116.99886 * 2 1 4 4 O 1.21516 * 120.00630 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99724 * 0.02562 * 5 3 2 7 7 C 1.46500 * 119.99972 * 180.02562 * 5 3 2 8 8 C 1.53004 * 109.46825 * 270.00186 * 7 5 3 9 9 N 1.46904 * 109.47204 * 180.02562 * 8 7 5 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31557 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47164 * 60.00242 * 22 20 18 24 24 H 1.48500 * 109.46831 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46959 * 299.99841 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47039 * 59.99836 * 1 2 3 29 29 H 1.08998 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47250 * 300.00297 * 1 2 3 31 31 H 1.08997 * 109.46803 * 269.99672 * 6 5 3 32 32 H 1.08998 * 109.47167 * 29.99826 * 6 5 3 33 33 H 1.09002 * 109.46803 * 150.00295 * 6 5 3 34 34 H 1.09002 * 109.47294 * 150.00486 * 7 5 3 35 35 H 1.08994 * 109.47243 * 29.99593 * 7 5 3 36 36 H 1.08995 * 109.47560 * 59.99918 * 8 7 5 37 37 H 1.09004 * 109.46743 * 299.99762 * 8 7 5 38 38 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 39 39 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 40 40 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47148 * 299.99944 * 12 10 9 42 42 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 43 43 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 44 44 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 46 46 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5755 0.0011 8 6 4.3063 3.0302 -1.4413 9 7 4.9737 4.3389 -1.4408 10 6 5.2137 4.8079 -2.8120 11 1 5.4413 3.9560 -3.4528 12 6 3.9636 5.5191 -3.3339 13 6 6.3765 5.7664 -2.8187 14 6 6.5134 6.6925 -1.8008 15 6 7.5810 7.5686 -1.8011 16 6 8.5117 7.5263 -2.8310 17 8 9.5595 8.3893 -2.8369 18 6 10.4869 8.2198 -3.8007 19 1 10.3357 7.4781 -4.5710 20 6 11.6347 8.9976 -3.8029 21 7 11.8191 9.9007 -2.8642 22 14 12.9199 8.7622 -5.1379 23 1 12.3078 9.0223 -6.4657 24 1 14.0429 9.7082 -4.9162 25 1 13.4309 7.3687 -5.0927 26 6 8.3685 6.5988 -3.8548 27 6 7.3015 5.7221 -3.8461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.4045 -0.2634 1.0282 32 1 3.6587 -0.7478 -0.5137 33 1 5.1516 0.2216 -0.5129 34 1 5.0321 2.4951 0.5152 35 1 3.4460 3.3031 0.5148 36 1 3.3486 3.1106 -1.9554 37 1 4.9345 2.3025 -1.9550 38 1 4.4418 5.0158 -0.9145 39 1 3.7360 6.3709 -2.6931 40 1 4.1415 5.8668 -4.3516 41 1 3.1225 4.8259 -3.3290 42 1 5.7867 6.7281 -1.0026 43 1 7.6897 8.2886 -1.0035 44 1 12.6222 10.4447 -2.8655 45 1 9.0903 6.5637 -4.6573 46 1 7.1897 5.0004 -4.6417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850548030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:56 Heat of formation + Delta-G solvation = -74.351283 kcal Electronic energy + Delta-G solvation = -26272.760788 eV Core-core repulsion = 22356.734992 eV Total energy + Delta-G solvation = -3916.025796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84037 -39.17328 -37.96081 -37.17322 -36.07010 -35.32777 -32.34692 -31.59885 -30.13295 -28.58771 -28.02965 -27.75706 -26.26679 -25.35718 -23.27203 -22.49405 -21.64693 -20.78648 -19.97274 -18.40331 -17.88835 -17.44091 -17.05057 -16.87508 -15.89622 -15.48521 -15.08725 -14.70185 -14.54030 -14.36899 -14.19383 -13.95151 -13.65630 -13.52315 -13.23086 -13.14830 -12.95047 -12.75235 -12.65059 -12.49298 -12.38253 -12.26843 -12.07030 -11.64217 -11.36021 -11.32440 -11.12995 -11.10034 -10.86291 -10.66988 -10.60372 -10.43450 -10.38604 -9.28310 -9.17679 -8.78379 -8.40133 -8.09712 -7.09499 -6.40690 -3.99496 1.79143 2.29258 2.38774 2.47039 3.15130 3.16366 3.19027 3.52143 4.00037 4.23880 4.63196 4.71025 4.76504 4.82322 4.84780 4.88143 5.08594 5.11064 5.12637 5.14315 5.30020 5.35019 5.37545 5.38781 5.44074 5.53643 5.69541 5.72282 5.80712 5.86004 5.91423 6.00912 6.06364 6.20069 6.28509 6.48055 6.77092 6.87930 6.92529 7.03070 7.12366 7.34576 7.37334 7.47692 7.50866 7.89450 7.92103 8.04452 9.04993 9.76533 10.77462 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.001919 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.296214 B =14584.266353 C =14756.843680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.570 6.570 5 N -0.596 5.596 6 C 0.082 3.918 7 C 0.131 3.869 8 C 0.043 3.957 9 N -0.676 5.676 10 C 0.144 3.856 11 H 0.075 0.925 12 C -0.176 4.176 13 C -0.166 4.166 14 C -0.053 4.053 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.233 4.233 27 C -0.068 4.068 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.341 0.659 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.207 -19.825 3.984 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.459 6.459 5 N -0.336 5.336 6 C -0.061 4.061 7 C 0.010 3.990 8 C -0.087 4.087 9 N -0.307 5.307 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.235 4.235 13 C -0.168 4.168 14 C -0.072 4.072 15 C -0.213 4.213 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.253 4.253 27 C -0.087 4.087 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.600 -19.455 4.274 26.580 hybrid contribution -0.337 0.089 -1.049 1.105 sum -17.937 -19.366 3.225 26.593 Atomic orbital electron populations 1.23197 0.74446 1.03444 1.02788 1.86237 1.24140 1.31115 1.87027 1.18133 0.83328 0.82154 0.76469 1.91011 1.64277 1.34906 1.55659 1.46617 1.02159 1.08696 1.76129 1.21826 0.96232 0.85628 1.02372 1.21493 0.97864 0.82201 0.97478 1.22303 0.97420 0.92559 0.96429 1.60548 1.51705 1.03754 1.14700 1.20162 0.92643 0.95579 0.88156 0.90719 1.22492 0.97731 1.00739 1.02551 1.19049 0.98676 1.00716 0.98334 1.20315 0.96249 0.93854 0.96744 1.20210 0.97114 1.04154 0.99843 1.19391 0.88909 0.88851 0.92899 1.83975 1.28429 1.46161 1.49798 1.21258 0.98099 1.22010 1.05378 0.89211 1.25270 0.97380 0.95643 0.98250 1.70030 1.27278 1.20512 1.32107 0.85799 0.79403 0.78514 0.79802 1.19575 1.20320 1.19550 1.21099 1.01492 1.00802 1.01863 1.20533 0.93650 0.97608 0.96903 0.91857 0.87966 0.91839 0.92239 0.90511 0.90341 0.88520 0.89522 0.94920 0.90879 0.84041 0.92252 0.91825 0.93405 0.87321 0.86709 0.92049 0.85715 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.41 9.39 -40.30 -0.38 -3.79 16 3 C 0.65 7.21 8.40 54.06 0.45 7.67 16 4 O -0.57 -8.06 15.71 -19.28 -0.30 -8.36 16 5 N -0.60 -5.44 2.87 -187.41 -0.54 -5.98 16 6 C 0.08 0.50 10.44 59.85 0.62 1.13 16 7 C 0.13 1.21 5.67 -4.04 -0.02 1.19 16 8 C 0.04 0.45 5.81 -3.82 -0.02 0.42 16 9 N -0.68 -7.98 5.71 -107.95 -0.62 -8.60 16 10 C 0.14 1.90 2.79 -68.87 -0.19 1.71 16 11 H 0.07 0.96 7.66 -51.92 -0.40 0.57 16 12 C -0.18 -2.13 9.14 37.16 0.34 -1.79 16 13 C -0.17 -2.79 4.96 -104.57 -0.52 -3.31 16 14 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 15 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 16 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 18 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 19 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 22 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 27 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.44 7.37 -51.93 -0.38 0.05 16 33 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 36 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 37 H 0.07 0.73 8.05 -51.93 -0.42 0.32 16 38 H 0.34 3.82 7.82 -39.29 -0.31 3.51 16 39 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 42 H 0.11 1.64 7.25 -52.48 -0.38 1.26 16 43 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 46 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -33.48 386.19 -7.09 -40.57 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.97 Total: 5.48 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 0.16 Total: -10.80 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.40 Total: -39.37 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.68 Total: -17.35 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.48 -7.09 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850548030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.782 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds