Wall clock time and date at job start Tue Mar 31 2020 16:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34631 * 116.99886 * 2 1 4 4 O 1.21516 * 120.00630 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99724 * 0.02562 * 5 3 2 7 7 C 1.46500 * 119.99972 * 180.02562 * 5 3 2 8 8 C 1.53004 * 109.46825 * 270.00186 * 7 5 3 9 9 N 1.46904 * 109.47204 * 180.02562 * 8 7 5 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31557 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47164 * 60.00242 * 22 20 18 24 24 H 1.48500 * 109.46831 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46959 * 299.99841 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47039 * 59.99836 * 1 2 3 29 29 H 1.08998 * 109.47475 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47250 * 300.00297 * 1 2 3 31 31 H 1.08997 * 109.46803 * 269.99672 * 6 5 3 32 32 H 1.08998 * 109.47167 * 29.99826 * 6 5 3 33 33 H 1.09002 * 109.46803 * 150.00295 * 6 5 3 34 34 H 1.09002 * 109.47294 * 150.00486 * 7 5 3 35 35 H 1.08994 * 109.47243 * 29.99593 * 7 5 3 36 36 H 1.08995 * 109.47560 * 59.99918 * 8 7 5 37 37 H 1.09004 * 109.46743 * 299.99762 * 8 7 5 38 38 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 39 39 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 40 40 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.47148 * 299.99944 * 12 10 9 42 42 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 43 43 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 44 44 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 46 46 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5755 0.0011 8 6 4.3063 3.0302 -1.4413 9 7 4.9737 4.3389 -1.4408 10 6 5.2137 4.8079 -2.8120 11 1 5.4413 3.9560 -3.4528 12 6 3.9636 5.5191 -3.3339 13 6 6.3765 5.7664 -2.8187 14 6 6.5134 6.6925 -1.8008 15 6 7.5810 7.5686 -1.8011 16 6 8.5117 7.5263 -2.8310 17 8 9.5595 8.3893 -2.8369 18 6 10.4869 8.2198 -3.8007 19 1 10.3357 7.4781 -4.5710 20 6 11.6347 8.9976 -3.8029 21 7 11.8191 9.9007 -2.8642 22 14 12.9199 8.7622 -5.1379 23 1 12.3078 9.0223 -6.4657 24 1 14.0429 9.7082 -4.9162 25 1 13.4309 7.3687 -5.0927 26 6 8.3685 6.5988 -3.8548 27 6 7.3015 5.7221 -3.8461 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.4045 -0.2634 1.0282 32 1 3.6587 -0.7478 -0.5137 33 1 5.1516 0.2216 -0.5129 34 1 5.0321 2.4951 0.5152 35 1 3.4460 3.3031 0.5148 36 1 3.3486 3.1106 -1.9554 37 1 4.9345 2.3025 -1.9550 38 1 4.4418 5.0158 -0.9145 39 1 3.7360 6.3709 -2.6931 40 1 4.1415 5.8668 -4.3516 41 1 3.1225 4.8259 -3.3290 42 1 5.7867 6.7281 -1.0026 43 1 7.6897 8.2886 -1.0035 44 1 12.6222 10.4447 -2.8655 45 1 9.0903 6.5637 -4.6573 46 1 7.1897 5.0004 -4.6417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850548030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:55 Heat of formation + Delta-G solvation = -96.906316 kcal Electronic energy + Delta-G solvation = -26273.738848 eV Core-core repulsion = 22356.734992 eV Total energy + Delta-G solvation = -3917.003856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60266 -40.81408 -39.18382 -38.21148 -37.09278 -36.44022 -34.26957 -32.73606 -31.74179 -29.69960 -28.97178 -28.51968 -27.33021 -26.92903 -24.29850 -23.89399 -23.04836 -21.68504 -21.27651 -19.72554 -19.11987 -18.78393 -18.17978 -17.78190 -16.93886 -16.58868 -16.24998 -16.20088 -15.78689 -15.47437 -15.40194 -15.15244 -14.96163 -14.79921 -14.42312 -14.19628 -14.03078 -13.90706 -13.80148 -13.51112 -13.40583 -13.14845 -13.07957 -12.94910 -12.85278 -12.56003 -12.31889 -12.17539 -12.08250 -12.03129 -11.80693 -11.77180 -11.68412 -11.12313 -10.74921 -9.89071 -9.71027 -9.37276 -8.82306 -8.43983 -6.11921 0.66723 0.76537 1.12869 1.35901 1.46957 1.52284 1.65339 2.20037 2.81642 2.90958 3.18633 3.40473 3.57478 3.93220 4.00464 4.09967 4.15827 4.24807 4.31088 4.33941 4.35316 4.38496 4.40571 4.52988 4.64764 4.66276 4.67061 4.74131 4.75332 4.87952 4.93112 4.95797 4.99597 5.14718 5.18340 5.22769 5.26265 5.32735 5.37934 5.63534 5.76550 5.81398 6.06569 6.13400 6.20120 6.29772 6.44377 7.00699 7.14839 7.83375 8.79212 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030888 B = 0.001919 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.296214 B =14584.266353 C =14756.843680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.638 3.362 4 O -0.607 6.607 5 N -0.593 5.593 6 C 0.079 3.921 7 C 0.135 3.865 8 C 0.054 3.946 9 N -0.681 5.681 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.172 4.172 13 C -0.140 4.140 14 C -0.046 4.046 15 C -0.206 4.206 16 C 0.109 3.891 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.242 4.242 27 C -0.067 4.067 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.022 0.978 37 H 0.081 0.919 38 H 0.346 0.654 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.272 0.728 45 H 0.117 0.883 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.660 -22.984 3.155 30.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.393 3.607 4 O -0.499 6.499 5 N -0.333 5.333 6 C -0.063 4.063 7 C 0.013 3.987 8 C -0.077 4.077 9 N -0.312 5.312 10 C 0.039 3.961 11 H 0.106 0.894 12 C -0.230 4.230 13 C -0.141 4.141 14 C -0.064 4.064 15 C -0.225 4.225 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.261 4.261 27 C -0.086 4.086 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.099 0.901 38 H 0.165 0.835 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.159 0.841 43 H 0.127 0.873 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.100 -22.681 3.451 29.852 hybrid contribution -0.235 0.839 -0.690 1.111 sum -19.335 -21.842 2.762 29.301 Atomic orbital electron populations 1.23477 0.73014 1.05589 1.02382 1.86248 1.25564 1.29992 1.86667 1.18399 0.83900 0.82191 0.76205 1.90979 1.65264 1.36167 1.57501 1.46745 1.01773 1.09589 1.75154 1.22020 0.96357 0.84475 1.03424 1.21436 0.98184 0.82235 0.96873 1.22227 0.96756 0.91711 0.96960 1.60460 1.52406 1.04598 1.13749 1.20120 0.91433 0.95161 0.89435 0.89353 1.22425 0.97403 1.00867 1.02344 1.19575 0.98541 0.99632 0.96351 1.20668 0.95345 0.92585 0.97799 1.20458 0.97787 1.05039 0.99241 1.19939 0.89047 0.90046 0.95015 1.83937 1.30255 1.48867 1.51185 1.21769 0.98699 1.22571 1.05842 0.88187 1.26587 0.99554 0.95050 1.00994 1.70185 1.28440 1.22441 1.34979 0.84655 0.76050 0.79007 0.76541 1.18185 1.19681 1.18175 1.21206 1.02700 1.01137 1.01068 1.20908 0.92370 0.97104 0.98183 0.92343 0.84539 0.92233 0.91146 0.90018 0.88968 0.87065 0.90797 0.95975 0.90097 0.83522 0.92368 0.91920 0.92099 0.84078 0.87272 0.91938 0.86511 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -6.17 9.39 -55.41 -0.52 -6.69 16 3 C 0.64 13.34 8.40 129.79 1.09 14.43 16 4 O -0.61 -16.73 15.71 19.79 0.31 -16.42 16 5 N -0.59 -9.48 2.87 -977.25 -2.81 -12.29 16 6 C 0.08 0.73 10.44 127.77 1.33 2.06 16 7 C 0.13 2.15 5.67 86.38 0.49 2.64 16 8 C 0.05 0.93 5.81 86.30 0.50 1.43 16 9 N -0.68 -13.66 5.71 -495.45 -2.83 -16.49 16 10 C 0.15 3.33 2.79 44.17 0.12 3.45 16 11 H 0.09 1.84 7.66 -2.38 -0.02 1.83 16 12 C -0.17 -3.53 9.14 71.98 0.66 -2.87 16 13 C -0.14 -4.28 4.96 -19.83 -0.10 -4.38 16 14 C -0.05 -1.54 9.31 22.25 0.21 -1.33 16 15 C -0.21 -8.94 9.99 22.39 0.22 -8.71 16 16 C 0.11 5.55 6.65 22.58 0.15 5.70 16 17 O -0.24 -14.46 9.76 -22.65 -0.22 -14.68 16 18 C -0.41 -24.40 9.49 67.92 0.64 -23.75 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 21 N -0.92 -57.37 13.67 21.61 0.30 -57.08 16 22 Si 1.02 43.31 29.55 68.60 2.03 45.33 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C -0.24 -10.63 9.17 22.39 0.21 -10.42 16 27 C -0.07 -2.30 9.66 22.25 0.21 -2.09 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.70 7.37 -2.39 -0.02 0.68 16 33 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.07 1.40 7.42 -2.39 -0.02 1.38 16 36 H 0.02 0.44 7.44 -2.39 -0.02 0.43 16 37 H 0.08 1.30 8.05 -2.39 -0.02 1.29 16 38 H 0.35 6.58 7.82 -89.69 -0.70 5.88 16 39 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 42 H 0.14 3.83 7.25 -2.91 -0.02 3.81 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 46 H 0.14 3.77 8.03 -2.91 -0.02 3.75 16 Total: -1.00 -77.74 386.19 3.95 -73.79 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.29 Total: 27.57 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 7.41 Total: -23.05 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -5.34 Total: -85.86 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.43 Total: -37.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.74 3.95 -73.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850548030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.117 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds