Wall clock time and date at job start Tue Mar 31 2020 16:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46643 * 240.00519 * 2 1 3 5 5 C 1.50701 * 109.46951 * 175.00155 * 4 2 1 6 6 H 1.08004 * 120.00124 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99971 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00218 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46963 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47163 * 119.99864 * 9 7 5 12 12 H 1.48498 * 109.47271 * 240.00133 * 9 7 5 13 13 N 1.46893 * 109.47096 * 120.00189 * 2 1 3 14 14 C 1.46852 * 111.00084 * 58.95323 * 13 2 1 15 15 C 1.53037 * 109.52567 * 174.15890 * 14 13 2 16 16 C 1.53123 * 109.27764 * 59.17703 * 15 14 13 17 17 H 1.08996 * 109.52099 * 62.25417 * 16 15 14 18 18 C 1.53002 * 109.57210 * 182.41052 * 16 15 14 19 19 C 1.53124 * 109.15914 * 302.34559 * 16 15 14 20 20 H 1.09005 * 109.49828 * 177.63491 * 19 16 15 21 21 N 1.46496 * 109.50471 * 297.71375 * 19 16 15 22 22 C 1.34775 * 119.99642 * 205.00310 * 21 19 16 23 23 O 1.21279 * 120.00300 * 359.97438 * 22 21 19 24 24 C 1.50703 * 119.99773 * 180.02562 * 22 21 19 25 25 F 1.39905 * 109.47157 * 179.97438 * 24 22 21 26 26 F 1.39900 * 109.47159 * 60.00021 * 24 22 21 27 27 F 1.39897 * 109.47274 * 299.99712 * 24 22 21 28 28 C 1.46838 * 111.00417 * 294.74095 * 13 2 1 29 29 H 1.09003 * 109.47371 * 59.99495 * 1 2 3 30 30 H 1.08999 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46956 * 299.99762 * 1 2 3 32 32 H 1.09004 * 109.47057 * 294.99502 * 4 2 1 33 33 H 1.08995 * 109.47630 * 54.99554 * 4 2 1 34 34 H 0.97001 * 119.99939 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.46480 * 54.14507 * 14 13 2 36 36 H 1.08992 * 109.45176 * 294.17128 * 14 13 2 37 37 H 1.09005 * 109.50145 * 299.23810 * 15 14 13 38 38 H 1.08997 * 109.50490 * 179.12384 * 15 14 13 39 39 H 1.09007 * 109.46417 * 179.71504 * 18 16 15 40 40 H 1.08996 * 109.47373 * 299.71341 * 18 16 15 41 41 H 1.09002 * 109.47028 * 59.71601 * 18 16 15 42 42 H 0.96998 * 120.00192 * 24.99834 * 21 19 16 43 43 H 1.09007 * 109.45952 * 65.82223 * 28 13 2 44 44 H 1.08997 * 109.46257 * 305.85830 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5419 -0.6149 -1.3129 6 1 4.0790 -0.0855 -0.5397 7 6 4.2303 -1.1934 -2.3580 8 7 3.5763 -1.8385 -3.2992 9 14 6.0919 -1.0611 -2.4371 10 1 6.5836 -0.2909 -1.2665 11 1 6.6862 -2.4219 -2.4187 12 1 6.4860 -0.3658 -3.6887 13 7 2.0197 -0.6925 1.1994 14 6 1.5285 -2.0757 1.2458 15 6 2.1725 -2.8078 2.4253 16 6 1.8226 -2.0781 3.7253 17 1 0.7429 -2.0962 3.8738 18 6 2.5124 -2.7697 4.9029 19 6 2.3021 -0.6269 3.6317 20 1 2.0185 -0.0909 4.5375 21 7 3.7594 -0.6018 3.4845 22 6 4.4576 0.4823 3.8765 23 8 3.8795 1.4371 4.3507 24 6 5.9568 0.5083 3.7246 25 9 6.4522 1.7285 4.1968 26 9 6.2912 0.3610 2.3742 27 9 6.5185 -0.5400 4.4612 28 6 1.6542 0.0419 2.4172 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7516 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 4.0608 -2.2458 -4.0343 35 1 1.7876 -2.5845 0.3174 36 1 0.4454 -2.0723 1.3681 37 1 3.2549 -2.8234 2.2968 38 1 1.7959 -3.8297 2.4688 39 1 2.2662 -2.2459 5.8266 40 1 2.1705 -3.8025 4.9687 41 1 3.5918 -2.7531 4.7524 42 1 4.2217 -1.3654 3.1050 43 1 0.5704 0.0352 2.5339 44 1 2.0046 1.0711 2.3396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852757415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:57 Heat of formation + Delta-G solvation = -209.011260 kcal Electronic energy + Delta-G solvation = -30009.823278 eV Core-core repulsion = 25546.101447 eV Total energy + Delta-G solvation = -4463.721831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.40687 -48.91933 -48.91077 -41.61513 -39.97343 -37.44581 -34.92920 -34.42933 -32.22927 -31.37960 -29.33486 -28.74899 -27.67415 -25.19147 -24.22471 -23.52325 -22.70396 -21.14201 -20.39527 -19.93890 -19.83321 -19.46312 -18.32492 -17.33078 -16.91201 -16.70569 -16.52502 -16.23906 -15.68150 -15.66858 -15.55019 -15.30132 -15.11483 -15.02596 -15.02025 -15.00584 -14.59151 -14.50792 -14.27042 -13.93677 -13.71665 -13.62072 -13.23773 -13.13344 -12.88004 -12.64076 -12.53176 -12.37950 -12.28635 -11.90557 -11.72567 -11.52485 -11.37851 -11.28200 -11.04295 -10.88567 -10.45023 -10.30744 -8.86544 -8.08973 -6.12322 0.67347 0.85969 1.39130 1.42470 1.54683 2.01360 2.47516 2.59366 3.00771 3.04265 3.13357 3.29057 3.63457 3.81337 3.93289 4.15566 4.30699 4.42469 4.45737 4.50839 4.56023 4.57966 4.67934 4.74709 4.86777 4.95411 4.98651 5.03783 5.09243 5.18982 5.23742 5.27478 5.30044 5.40833 5.50813 5.55497 5.73047 5.92864 5.95261 6.34222 6.50062 6.52557 6.55367 7.01891 7.53645 9.02978 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009821 B = 0.006237 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.318001 B = 4488.062959 C = 6106.601982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.052 0.948 4 C 0.037 3.963 5 C -0.491 4.491 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.938 5.938 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.522 5.522 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.089 4.089 17 H 0.104 0.896 18 C -0.143 4.143 19 C 0.156 3.844 20 H 0.106 0.894 21 N -0.661 5.661 22 C 0.489 3.511 23 O -0.516 6.516 24 C 0.452 3.548 25 F -0.162 7.162 26 F -0.170 7.170 27 F -0.161 7.161 28 C 0.041 3.959 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.006 0.994 33 H -0.013 1.013 34 H 0.257 0.743 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.416 0.584 43 H 0.060 0.940 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.688 -1.846 18.680 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 H 0.071 0.929 4 C 0.000 4.000 5 C -0.529 4.529 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.580 5.580 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.246 5.246 14 C -0.074 4.074 15 C -0.146 4.146 16 C -0.107 4.107 17 H 0.122 0.878 18 C -0.201 4.201 19 C 0.053 3.947 20 H 0.123 0.877 21 N -0.312 5.312 22 C 0.266 3.734 23 O -0.391 6.391 24 C 0.394 3.606 25 F -0.144 7.144 26 F -0.152 7.152 27 F -0.143 7.143 28 C -0.088 4.088 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.005 0.995 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.546 -1.292 18.846 19.061 hybrid contribution 0.779 -0.069 -1.155 1.395 sum -1.767 -1.361 17.691 17.831 Atomic orbital electron populations 1.22369 0.97164 1.01811 1.01791 1.21558 0.92049 0.96860 0.90812 0.92932 1.19074 0.95041 0.94706 0.91210 1.21453 0.93193 1.31824 1.06440 0.92699 1.25713 1.02035 0.95867 0.95868 1.70082 1.36705 1.38150 1.13097 0.85714 0.81729 0.77749 0.77797 1.19114 1.20645 1.21299 1.61891 1.60032 1.02019 1.00702 1.22107 0.96931 0.89204 0.99197 1.21665 1.00943 0.99342 0.92651 1.21467 1.02096 0.91467 0.95717 0.87772 1.21801 1.00362 1.01171 0.96720 1.21405 0.76910 0.98434 0.97956 0.87662 1.45844 1.09044 1.17061 1.59248 1.20142 0.86951 0.85175 0.81096 1.90818 1.68701 1.34747 1.44881 1.20296 0.90730 0.74808 0.74790 1.93233 1.88748 1.44181 1.88196 1.93333 1.93640 1.95295 1.32893 1.93257 1.87043 1.57128 1.76848 1.22495 0.98690 0.97371 0.90238 0.92969 0.92518 0.91593 0.97581 0.99495 0.93374 0.92630 0.94191 0.92234 0.89408 0.91792 0.90884 0.92954 0.74544 0.92212 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 8.50 71.98 0.61 -4.79 16 2 C 0.10 3.69 2.29 44.92 0.10 3.80 16 3 H 0.05 2.18 8.08 -2.39 -0.02 2.17 16 4 C 0.04 1.83 4.27 29.85 0.13 1.96 16 5 C -0.49 -26.98 8.84 25.60 0.23 -26.75 16 6 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.94 -56.32 13.29 21.45 0.28 -56.04 16 9 Si 0.94 45.06 29.54 68.60 2.03 47.09 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 N -0.52 -17.18 4.21 -871.13 -3.66 -20.84 16 14 C 0.05 1.56 4.64 86.32 0.40 1.96 16 15 C -0.11 -2.33 5.20 30.65 0.16 -2.17 16 16 C -0.09 -1.46 2.57 -10.71 -0.03 -1.49 16 17 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 18 C -0.14 -1.89 9.02 71.98 0.65 -1.25 16 19 C 0.16 3.34 2.28 45.05 0.10 3.44 16 20 H 0.11 2.11 7.58 -2.38 -0.02 2.09 16 21 N -0.66 -15.83 4.13 -442.28 -1.83 -17.66 16 22 C 0.49 13.47 7.32 87.66 0.64 14.11 16 23 O -0.52 -16.51 16.28 -3.03 -0.05 -16.56 16 24 C 0.45 12.20 3.43 71.24 0.24 12.44 16 25 F -0.16 -4.61 16.92 44.97 0.76 -3.85 16 26 F -0.17 -5.33 17.30 44.97 0.78 -4.55 16 27 F -0.16 -3.75 17.30 44.97 0.78 -2.97 16 28 C 0.04 1.09 4.65 86.33 0.40 1.49 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.72 6.52 -2.39 -0.02 1.71 16 31 H 0.07 1.73 6.66 -2.39 -0.02 1.72 16 32 H 0.01 0.32 6.06 -2.39 -0.01 0.30 16 33 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.06 2.09 5.94 -2.39 -0.01 2.08 16 36 H 0.04 1.05 6.62 -2.39 -0.02 1.04 16 37 H 0.06 1.42 6.68 -2.38 -0.02 1.40 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.75 7.30 -2.39 -0.02 0.73 16 42 H 0.42 9.53 6.67 -92.71 -0.62 8.91 16 43 H 0.06 1.38 6.73 -2.38 -0.02 1.37 16 44 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 Total: -1.00 -65.06 356.58 3.60 -61.46 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.41 Total: 10.62 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.10 Total: 3.29 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -5.21 Total: -94.54 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.05 Total: -16.56 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 2.32 Total: -11.37 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.06 3.60 -61.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852757415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.548 kcal (2) G-P(sol) polarization free energy of solvation -65.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds