Wall clock time and date at job start Tue Mar 31 2020 16:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47358 * 2 1 4 4 C 1.53003 * 109.47163 * 119.99858 * 2 1 3 5 5 C 1.50698 * 109.47068 * 183.94313 * 4 2 1 6 6 H 1.07996 * 120.00087 * 357.40020 * 5 4 2 7 7 C 1.37881 * 119.99715 * 177.40573 * 5 4 2 8 8 N 1.31511 * 120.00265 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99724 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46979 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46814 * 119.99638 * 9 7 5 12 12 H 1.48500 * 109.47165 * 239.99646 * 9 7 5 13 13 N 1.46897 * 109.47067 * 239.99669 * 2 1 3 14 14 C 1.46848 * 111.00084 * 72.99024 * 13 2 1 15 15 C 1.53039 * 109.52506 * 174.16324 * 14 13 2 16 16 C 1.53120 * 109.27855 * 59.17491 * 15 14 13 17 17 H 1.08998 * 109.51869 * 62.25516 * 16 15 14 18 18 C 1.53001 * 109.56951 * 182.40934 * 16 15 14 19 19 C 1.53115 * 109.16037 * 302.34541 * 16 15 14 20 20 H 1.09006 * 109.50062 * 177.59216 * 19 16 15 21 21 N 1.46500 * 109.50646 * 297.71320 * 19 16 15 22 22 C 1.34771 * 120.00049 * 204.80615 * 21 19 16 23 23 O 1.21278 * 120.00229 * 359.97438 * 22 21 19 24 24 C 1.50702 * 120.00240 * 180.02562 * 22 21 19 25 25 F 1.39893 * 109.47260 * 179.97438 * 24 22 21 26 26 F 1.39902 * 109.47053 * 300.00175 * 24 22 21 27 27 F 1.39899 * 109.46734 * 59.99719 * 24 22 21 28 28 C 1.46843 * 111.00039 * 308.77800 * 13 2 1 29 29 H 1.09003 * 109.46860 * 300.00115 * 1 2 3 30 30 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47026 * 60.00069 * 1 2 3 32 32 H 1.09001 * 109.46866 * 303.94072 * 4 2 1 33 33 H 1.09002 * 109.47432 * 63.93811 * 4 2 1 34 34 H 0.97002 * 119.99966 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45686 * 294.17337 * 14 13 2 36 36 H 1.09000 * 109.46328 * 54.14025 * 14 13 2 37 37 H 1.09000 * 109.49738 * 299.23321 * 15 14 13 38 38 H 1.08995 * 109.53163 * 179.13858 * 15 14 13 39 39 H 1.09002 * 109.46586 * 179.71653 * 18 16 15 40 40 H 1.08996 * 109.47443 * 299.71219 * 18 16 15 41 41 H 1.08999 * 109.47166 * 59.71952 * 18 16 15 42 42 H 0.97001 * 119.99570 * 24.80372 * 21 19 16 43 43 H 1.09005 * 109.46663 * 305.85626 * 28 13 2 44 44 H 1.08998 * 109.46239 * 65.82286 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5439 -0.6372 1.2991 6 1 4.0848 -0.1577 0.4967 7 6 4.2292 -1.1726 2.3690 8 7 3.5705 -1.7561 3.3463 9 14 6.0933 -1.0690 2.4304 10 1 6.5903 -0.3685 1.2191 11 1 6.5076 -0.3164 3.6418 12 1 6.6639 -2.4391 2.4796 13 7 2.0197 -0.6925 -1.1994 14 6 1.8170 0.1278 -2.4004 15 6 2.4670 -0.5583 -3.6041 16 6 1.8403 -1.9420 -3.7966 17 1 0.7772 -1.8337 -4.0113 18 6 2.5268 -2.6580 -4.9614 19 6 2.0228 -2.7591 -2.5146 20 1 1.5412 -3.7301 -2.6303 21 7 3.4520 -2.9490 -2.2548 22 6 3.8701 -4.0008 -1.5232 23 8 3.0631 -4.7900 -1.0796 24 6 5.3402 -4.1959 -1.2555 25 9 5.5246 -5.3460 -0.4808 26 9 6.0207 -4.3369 -2.4698 27 9 5.8401 -3.0853 -0.5671 28 6 1.3856 -2.0093 -1.3425 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.6202 -0.2497 2.1378 33 1 1.7355 -1.7673 1.2148 34 1 4.0526 -2.1325 4.0992 35 1 0.7490 0.2464 -2.5830 36 1 2.2709 1.1076 -2.2518 37 1 3.5374 -0.6648 -3.4279 38 1 2.3034 0.0429 -4.4984 39 1 2.0829 -3.6447 -5.0937 40 1 2.3964 -2.0757 -5.8735 41 1 3.5902 -2.7639 -4.7468 42 1 4.0974 -2.3176 -2.6094 43 1 1.5262 -2.5818 -0.4256 44 1 0.3196 -1.8806 -1.5301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852757417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:00 Heat of formation + Delta-G solvation = -209.238674 kcal Electronic energy + Delta-G solvation = -30610.244252 eV Core-core repulsion = 26146.512559 eV Total energy + Delta-G solvation = -4463.731693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.42136 -48.94459 -48.91054 -41.59927 -39.92860 -37.40156 -35.03060 -34.38053 -32.17784 -31.37557 -29.23789 -28.76629 -27.76246 -25.17378 -24.39987 -23.20943 -22.79501 -21.07813 -20.39835 -20.03720 -19.85161 -19.46806 -18.33083 -17.29843 -17.10802 -16.65555 -16.51911 -16.08922 -15.70497 -15.66735 -15.40045 -15.31566 -15.17426 -15.04086 -15.03010 -15.02024 -14.59809 -14.45630 -14.20319 -14.00883 -13.79635 -13.49132 -13.35378 -13.05815 -12.90403 -12.59645 -12.54393 -12.39255 -12.29586 -11.90439 -11.68815 -11.54415 -11.41011 -11.17178 -11.06219 -10.92032 -10.47294 -10.27358 -8.84418 -8.09299 -6.11954 0.68863 0.89838 1.34908 1.39608 1.48613 2.00051 2.45621 2.59475 3.02162 3.06371 3.14961 3.30157 3.65564 3.82911 3.95125 4.16674 4.32696 4.41100 4.48668 4.52419 4.57669 4.60178 4.69749 4.77884 4.87808 4.99726 5.03141 5.06743 5.12408 5.18436 5.24947 5.25562 5.31150 5.41228 5.52029 5.52779 5.73600 5.91532 5.97625 6.33067 6.49309 6.58512 6.61345 7.03331 7.54164 9.03301 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.008198 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.472932 B = 3414.629524 C = 5379.517524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.069 0.931 4 C 0.038 3.962 5 C -0.481 4.481 6 H 0.064 0.936 7 C 0.001 3.999 8 N -0.941 5.941 9 Si 0.930 3.070 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.290 1.290 13 N -0.523 5.523 14 C 0.048 3.952 15 C -0.108 4.108 16 C -0.088 4.088 17 H 0.104 0.896 18 C -0.144 4.144 19 C 0.155 3.845 20 H 0.093 0.907 21 N -0.655 5.655 22 C 0.489 3.511 23 O -0.521 6.521 24 C 0.450 3.550 25 F -0.168 7.168 26 F -0.157 7.157 27 F -0.169 7.169 28 C 0.047 3.953 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.072 0.928 32 H -0.013 1.013 33 H -0.016 1.016 34 H 0.254 0.746 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.417 0.583 43 H 0.040 0.960 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 0.953 -20.404 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 H 0.087 0.913 4 C 0.001 3.999 5 C -0.520 4.520 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.584 5.584 9 Si 0.756 3.244 10 H -0.177 1.177 11 H -0.211 1.211 12 H -0.216 1.216 13 N -0.248 5.248 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.107 4.107 17 H 0.122 0.878 18 C -0.201 4.201 19 C 0.051 3.949 20 H 0.110 0.890 21 N -0.306 5.306 22 C 0.266 3.734 23 O -0.397 6.397 24 C 0.392 3.608 25 F -0.149 7.149 26 F -0.138 7.138 27 F -0.150 7.150 28 C -0.082 4.082 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.006 0.994 33 H 0.002 0.998 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.256 0.744 43 H 0.059 0.941 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.272 0.274 -19.916 20.047 hybrid contribution 0.762 0.006 1.149 1.378 sum -1.510 0.280 -18.767 18.830 Atomic orbital electron populations 1.22373 0.97367 1.01348 1.02031 1.21572 0.91906 0.97169 0.90480 0.91270 1.19023 0.95385 0.93696 0.91807 1.21446 0.92774 1.33943 1.03791 0.91795 1.25708 1.01692 0.96066 0.96046 1.70093 1.36577 1.41004 1.10701 0.85906 0.82434 0.77570 0.78444 1.17720 1.21061 1.21626 1.61872 1.58227 1.02368 1.02298 1.22238 0.99154 0.96780 0.89746 1.21685 1.00020 0.95186 0.97646 1.21472 1.02578 0.94656 0.92004 0.87831 1.21804 1.00338 1.00472 0.97468 1.21417 0.78516 0.99707 0.95269 0.88953 1.45647 1.10676 1.24432 1.49823 1.20145 0.87729 0.84271 0.81232 1.90813 1.53161 1.45649 1.50068 1.20337 0.90086 0.74882 0.75522 1.93214 1.95775 1.50278 1.75632 1.93247 1.81957 1.95503 1.43114 1.93313 1.88969 1.52670 1.80062 1.22369 0.96441 0.91396 0.97965 0.92986 0.93461 0.90956 0.99433 0.99779 0.93669 0.93970 0.90948 0.91873 0.88250 0.92501 0.90252 0.92907 0.74410 0.94102 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.40 8.40 71.98 0.60 -4.79 16 2 C 0.10 3.68 2.25 44.92 0.10 3.78 16 3 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 4 C 0.04 1.97 4.41 29.85 0.13 2.10 16 5 C -0.48 -26.83 8.81 25.60 0.23 -26.60 16 6 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.00 0.04 5.46 84.66 0.46 0.50 16 8 N -0.94 -59.62 13.29 21.45 0.28 -59.34 16 9 Si 0.93 46.52 29.54 68.60 2.03 48.54 16 10 H -0.25 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 13 N -0.52 -16.84 4.11 -871.10 -3.58 -20.43 16 14 C 0.05 1.08 5.18 86.33 0.45 1.53 16 15 C -0.11 -1.76 5.20 30.65 0.16 -1.60 16 16 C -0.09 -1.41 2.57 -10.71 -0.03 -1.44 16 17 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 18 C -0.14 -1.84 9.02 71.98 0.65 -1.19 16 19 C 0.15 3.87 2.28 45.04 0.10 3.97 16 20 H 0.09 2.37 7.58 -2.38 -0.02 2.35 16 21 N -0.65 -18.38 4.14 -442.29 -1.83 -20.21 16 22 C 0.49 17.17 7.32 87.66 0.64 17.81 16 23 O -0.52 -21.73 16.28 -3.02 -0.05 -21.78 16 24 C 0.45 15.41 3.43 71.24 0.24 15.65 16 25 F -0.17 -6.29 16.92 44.97 0.76 -5.53 16 26 F -0.16 -4.26 17.30 44.97 0.78 -3.48 16 27 F -0.17 -6.58 17.30 44.97 0.78 -5.80 16 28 C 0.05 1.50 4.09 86.33 0.35 1.85 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.53 6.45 -2.39 -0.02 1.51 16 31 H 0.07 1.80 6.93 -2.39 -0.02 1.78 16 32 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 33 H -0.02 -0.93 6.38 -2.39 -0.02 -0.94 16 34 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.04 0.84 6.98 -2.39 -0.02 0.82 16 36 H 0.07 1.66 7.98 -2.39 -0.02 1.64 16 37 H 0.06 1.14 6.68 -2.39 -0.02 1.12 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.05 0.73 7.30 -2.39 -0.02 0.72 16 42 H 0.42 10.12 6.67 -92.71 -0.62 9.50 16 43 H 0.04 1.75 6.28 -2.38 -0.01 1.74 16 44 H 0.06 1.56 6.57 -2.39 -0.02 1.55 16 Total: -1.00 -71.13 357.24 3.67 -67.46 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.41 Total: 8.99 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 4.09 Total: 11.57 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -5.13 Total: -99.98 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.05 Total: -21.78 kcal Atomic # 9 Polarization: -17.13 SS G_CDS: 2.32 Total: -14.81 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -71.13 3.67 -67.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852757417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.779 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds