Wall clock time and date at job start Tue Mar 31 2020 16:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.52257 * 2 1 4 4 C 1.53114 * 109.52499 * 239.86613 * 2 1 3 5 5 C 1.53037 * 109.31211 * 182.42298 * 4 2 1 6 6 N 1.46929 * 109.47910 * 59.15772 * 5 4 2 7 7 C 1.46900 * 110.98461 * 174.18240 * 6 5 4 8 8 C 1.53001 * 109.47047 * 294.22754 * 7 6 5 9 9 C 1.52997 * 109.47163 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47359 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99827 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00503 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99586 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47456 * 59.99548 * 14 12 10 16 16 H 1.48499 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46767 * 299.99491 * 14 12 10 18 18 C 1.46850 * 111.22205 * 298.28247 * 6 5 4 19 19 C 1.53037 * 109.52028 * 61.74456 * 18 6 5 20 20 H 1.08997 * 109.50150 * 180.88044 * 19 18 6 21 21 N 1.46504 * 109.53748 * 60.77859 * 19 18 6 22 22 C 1.34779 * 119.99829 * 85.17744 * 21 19 18 23 23 O 1.21283 * 119.99686 * 0.02562 * 22 21 19 24 24 C 1.50696 * 119.99860 * 180.02562 * 22 21 19 25 25 F 1.39905 * 109.46786 * 179.97438 * 24 22 21 26 26 F 1.39901 * 109.46879 * 299.99537 * 24 22 21 27 27 F 1.39895 * 109.47328 * 60.00036 * 24 22 21 28 28 H 1.08993 * 109.47360 * 180.13053 * 1 2 3 29 29 H 1.08999 * 109.47489 * 300.13359 * 1 2 3 30 30 H 1.09001 * 109.47046 * 60.13214 * 1 2 3 31 31 H 1.09002 * 109.50377 * 302.38422 * 4 2 1 32 32 H 1.09003 * 109.50316 * 62.46418 * 4 2 1 33 33 H 1.08994 * 109.46612 * 179.21753 * 5 4 2 34 34 H 1.09007 * 109.46083 * 299.18512 * 5 4 2 35 35 H 1.09001 * 109.47343 * 54.22849 * 7 6 5 36 36 H 1.08999 * 109.47204 * 174.23004 * 7 6 5 37 37 H 1.09001 * 109.47127 * 300.00227 * 8 7 6 38 38 H 1.09000 * 109.47324 * 60.00420 * 8 7 6 39 39 H 1.09000 * 109.47401 * 300.00512 * 9 8 7 40 40 H 1.08999 * 109.47301 * 60.00120 * 9 8 7 41 41 H 0.96998 * 120.00336 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.46198 * 301.72747 * 18 6 5 43 43 H 1.08995 * 109.45893 * 181.75622 * 18 6 5 44 44 H 0.96998 * 120.00375 * 265.17942 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7245 -1.2481 5 6 3.5709 -0.7746 -1.2129 6 7 4.0102 -1.4789 -0.0005 7 6 5.4670 -1.6677 -0.0006 8 6 5.8589 -2.6115 -1.1393 9 6 7.3761 -2.8087 -1.1390 10 6 7.7622 -3.7378 -2.2610 11 1 7.0015 -4.1470 -2.9091 12 6 9.0866 -4.0661 -2.4593 13 7 10.0129 -3.5682 -1.6697 14 14 9.5651 -5.2172 -3.8505 15 1 9.1433 -4.6289 -5.1471 16 1 11.0377 -5.4087 -3.8501 17 1 8.8949 -6.5286 -3.6605 18 6 3.5708 -0.7757 1.2115 19 6 2.0417 -0.7256 1.2476 20 1 1.7161 -0.1899 2.1393 21 7 1.5073 -2.0894 1.2738 22 6 1.3806 -2.7411 2.4467 23 8 1.7087 -2.1983 3.4805 24 6 0.8315 -4.1442 2.4736 25 9 0.7965 -4.6060 3.7938 26 9 -0.4631 -4.1485 1.9432 27 9 1.6516 -4.9807 1.7090 28 1 -0.3634 -1.0276 0.0023 29 1 -0.3634 0.5159 0.8887 30 1 -0.3633 0.5118 -0.8912 31 1 1.6447 -1.7394 -1.2682 32 1 1.7157 -0.1884 -2.1394 33 1 3.9373 -1.3021 -2.0934 34 1 3.9675 0.2407 -1.2067 35 1 5.9582 -0.7049 -0.1413 36 1 5.7776 -2.0984 0.9514 37 1 5.3677 -3.5743 -0.9985 38 1 5.5484 -2.1809 -2.0913 39 1 7.8677 -1.8460 -1.2794 40 1 7.6863 -3.2395 -0.1870 41 1 10.9446 -3.7989 -1.8094 42 1 3.9674 0.2396 1.2062 43 1 3.9377 -1.3043 2.0912 44 1 1.2446 -2.5234 0.4470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852757830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:56 Heat of formation + Delta-G solvation = -200.852781 kcal Electronic energy + Delta-G solvation = -28579.795801 eV Core-core repulsion = 24116.427748 eV Total energy + Delta-G solvation = -4463.368053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.52139 -48.06184 -47.99158 -40.74861 -38.87597 -36.00500 -33.91366 -33.34655 -31.38864 -30.60536 -28.59105 -27.57562 -25.77427 -23.50790 -23.18869 -22.00582 -21.67341 -19.98992 -19.64413 -19.48625 -18.96473 -18.67262 -16.57280 -16.30894 -15.92890 -15.54867 -15.38406 -15.05494 -14.80354 -14.78417 -14.43937 -14.41819 -14.40050 -14.12662 -14.11075 -14.06060 -13.80911 -13.65897 -13.24008 -12.87274 -12.55063 -12.38508 -12.17868 -11.96050 -11.69938 -11.33385 -11.09961 -10.84679 -10.78848 -10.74052 -10.59718 -10.54203 -10.35795 -9.62880 -9.59145 -9.30730 -9.05539 -8.33795 -8.16251 -5.99067 -4.01363 1.55772 1.68517 2.85352 3.33778 3.38195 3.40582 3.44270 3.84177 3.91045 3.99408 4.25206 4.45641 4.47186 4.50893 4.91073 5.11182 5.21150 5.23434 5.26755 5.34970 5.36733 5.42134 5.60219 5.64126 5.68121 5.77938 5.80440 5.87087 5.96458 6.03226 6.08811 6.28406 6.67267 6.69486 6.75937 7.09294 7.27600 7.30970 7.33830 7.68209 7.83103 8.00972 8.43958 9.05594 9.62651 11.12356 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.003171 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.811615 B = 8829.077982 C = 9903.087355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 H 0.089 0.911 4 C -0.114 4.114 5 C 0.048 3.952 6 N -0.536 5.536 7 C 0.058 3.942 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.040 3.960 19 C 0.155 3.845 20 H 0.098 0.902 21 N -0.674 5.674 22 C 0.486 3.514 23 O -0.486 6.486 24 C 0.449 3.551 25 F -0.156 7.156 26 F -0.172 7.172 27 F -0.161 7.161 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 6.878 5.474 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.080 4.080 6 N -0.261 5.261 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.090 4.090 19 C 0.051 3.949 20 H 0.116 0.884 21 N -0.326 5.326 22 C 0.263 3.737 23 O -0.359 6.359 24 C 0.391 3.609 25 F -0.137 7.137 26 F -0.153 7.153 27 F -0.143 7.143 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.717 6.806 6.252 24.525 hybrid contribution 0.638 -0.390 -1.107 1.336 sum -22.079 6.416 5.145 23.561 Atomic orbital electron populations 1.21833 0.94355 1.02169 1.02155 1.21522 0.96307 1.00032 0.94235 0.89303 1.21703 0.95727 1.00756 0.96996 1.22205 0.94439 0.96930 0.94424 1.62008 1.14750 1.48437 1.00867 1.22282 0.84368 0.99007 1.01260 1.21647 0.99809 0.97567 0.95097 1.19067 0.88642 0.96739 0.97129 1.21199 0.92275 1.27938 1.14331 0.92762 1.25020 0.96725 0.96320 0.96373 1.69950 1.00753 1.44598 1.38288 0.86666 0.77273 0.81456 0.82655 1.20286 1.21314 1.20209 1.22493 0.93825 0.97918 0.94731 1.21286 0.93367 0.80728 0.99532 0.88380 1.45776 1.62166 1.16506 1.08103 1.20170 0.81329 0.86141 0.86019 1.90862 1.47667 1.65257 1.32080 1.20325 0.76650 0.88899 0.75044 1.93262 1.96074 1.89616 1.34745 1.93247 1.38925 1.96896 1.86256 1.93317 1.71904 1.73715 1.75319 0.92521 0.92437 0.92050 0.91325 0.90855 0.89424 0.94903 0.95222 0.91245 0.92623 0.93455 0.96882 0.96642 0.92972 0.93596 0.90021 0.75138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.02 37.16 0.34 -0.54 16 2 C -0.10 -0.73 2.58 -90.50 -0.23 -0.96 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.93 5.19 -26.65 -0.14 -1.07 16 5 C 0.05 0.54 5.30 -3.79 -0.02 0.52 16 6 N -0.54 -7.07 4.51 -234.60 -1.06 -8.13 16 7 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 8 C -0.10 -2.08 5.08 -26.73 -0.14 -2.21 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.04 0.45 5.09 -3.83 -0.02 0.43 16 19 C 0.15 1.41 2.28 -67.84 -0.15 1.25 16 20 H 0.10 0.90 7.58 -51.93 -0.39 0.50 16 21 N -0.67 -6.33 4.13 -53.72 -0.22 -6.55 16 22 C 0.49 5.51 7.32 -10.99 -0.08 5.43 16 23 O -0.49 -6.85 16.28 5.56 0.09 -6.76 16 24 C 0.45 4.83 3.43 36.00 0.12 4.96 16 25 F -0.16 -1.87 16.92 2.25 0.04 -1.84 16 26 F -0.17 -1.62 17.30 2.25 0.04 -1.58 16 27 F -0.16 -1.87 17.30 2.25 0.04 -1.83 16 28 H 0.06 0.34 7.29 -51.93 -0.38 -0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.56 6.68 -51.93 -0.35 0.21 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.13 6.22 -51.93 -0.32 0.80 16 34 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16 44 H 0.41 3.35 6.67 -40.82 -0.27 3.08 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -31.07 364.69 -7.40 -38.47 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.65 Total: -3.32 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.89 Total: -4.30 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.54 Total: -41.01 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: 0.09 Total: -6.76 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.12 Total: -5.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.07 -7.40 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852757830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.379 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds