Wall clock time and date at job start Tue Mar 31 2020 16:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.52257 * 2 1 4 4 C 1.53114 * 109.52499 * 239.86613 * 2 1 3 5 5 C 1.53037 * 109.31211 * 182.42298 * 4 2 1 6 6 N 1.46929 * 109.47910 * 59.15772 * 5 4 2 7 7 C 1.46900 * 110.98461 * 174.18240 * 6 5 4 8 8 C 1.53001 * 109.47047 * 294.22754 * 7 6 5 9 9 C 1.52997 * 109.47163 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47359 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99827 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00503 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99586 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47456 * 59.99548 * 14 12 10 16 16 H 1.48499 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46767 * 299.99491 * 14 12 10 18 18 C 1.46850 * 111.22205 * 298.28247 * 6 5 4 19 19 C 1.53037 * 109.52028 * 61.74456 * 18 6 5 20 20 H 1.08997 * 109.50150 * 180.88044 * 19 18 6 21 21 N 1.46504 * 109.53748 * 60.77859 * 19 18 6 22 22 C 1.34779 * 119.99829 * 85.17744 * 21 19 18 23 23 O 1.21283 * 119.99686 * 0.02562 * 22 21 19 24 24 C 1.50696 * 119.99860 * 180.02562 * 22 21 19 25 25 F 1.39905 * 109.46786 * 179.97438 * 24 22 21 26 26 F 1.39901 * 109.46879 * 299.99537 * 24 22 21 27 27 F 1.39895 * 109.47328 * 60.00036 * 24 22 21 28 28 H 1.08993 * 109.47360 * 180.13053 * 1 2 3 29 29 H 1.08999 * 109.47489 * 300.13359 * 1 2 3 30 30 H 1.09001 * 109.47046 * 60.13214 * 1 2 3 31 31 H 1.09002 * 109.50377 * 302.38422 * 4 2 1 32 32 H 1.09003 * 109.50316 * 62.46418 * 4 2 1 33 33 H 1.08994 * 109.46612 * 179.21753 * 5 4 2 34 34 H 1.09007 * 109.46083 * 299.18512 * 5 4 2 35 35 H 1.09001 * 109.47343 * 54.22849 * 7 6 5 36 36 H 1.08999 * 109.47204 * 174.23004 * 7 6 5 37 37 H 1.09001 * 109.47127 * 300.00227 * 8 7 6 38 38 H 1.09000 * 109.47324 * 60.00420 * 8 7 6 39 39 H 1.09000 * 109.47401 * 300.00512 * 9 8 7 40 40 H 1.08999 * 109.47301 * 60.00120 * 9 8 7 41 41 H 0.96998 * 120.00336 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.46198 * 301.72747 * 18 6 5 43 43 H 1.08995 * 109.45893 * 181.75622 * 18 6 5 44 44 H 0.96998 * 120.00375 * 265.17942 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7245 -1.2481 5 6 3.5709 -0.7746 -1.2129 6 7 4.0102 -1.4789 -0.0005 7 6 5.4670 -1.6677 -0.0006 8 6 5.8589 -2.6115 -1.1393 9 6 7.3761 -2.8087 -1.1390 10 6 7.7622 -3.7378 -2.2610 11 1 7.0015 -4.1470 -2.9091 12 6 9.0866 -4.0661 -2.4593 13 7 10.0129 -3.5682 -1.6697 14 14 9.5651 -5.2172 -3.8505 15 1 9.1433 -4.6289 -5.1471 16 1 11.0377 -5.4087 -3.8501 17 1 8.8949 -6.5286 -3.6605 18 6 3.5708 -0.7757 1.2115 19 6 2.0417 -0.7256 1.2476 20 1 1.7161 -0.1899 2.1393 21 7 1.5073 -2.0894 1.2738 22 6 1.3806 -2.7411 2.4467 23 8 1.7087 -2.1983 3.4805 24 6 0.8315 -4.1442 2.4736 25 9 0.7965 -4.6060 3.7938 26 9 -0.4631 -4.1485 1.9432 27 9 1.6516 -4.9807 1.7090 28 1 -0.3634 -1.0276 0.0023 29 1 -0.3634 0.5159 0.8887 30 1 -0.3633 0.5118 -0.8912 31 1 1.6447 -1.7394 -1.2682 32 1 1.7157 -0.1884 -2.1394 33 1 3.9373 -1.3021 -2.0934 34 1 3.9675 0.2407 -1.2067 35 1 5.9582 -0.7049 -0.1413 36 1 5.7776 -2.0984 0.9514 37 1 5.3677 -3.5743 -0.9985 38 1 5.5484 -2.1809 -2.0913 39 1 7.8677 -1.8460 -1.2794 40 1 7.6863 -3.2395 -0.1870 41 1 10.9446 -3.7989 -1.8094 42 1 3.9674 0.2396 1.2062 43 1 3.9377 -1.3043 2.0912 44 1 1.2446 -2.5234 0.4470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852757830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:55 Heat of formation + Delta-G solvation = -220.560018 kcal Electronic energy + Delta-G solvation = -28580.650371 eV Core-core repulsion = 24116.427748 eV Total energy + Delta-G solvation = -4464.222623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.40531 -48.91966 -48.90564 -41.62187 -39.83908 -37.18064 -35.47452 -34.51458 -33.09679 -31.47946 -29.66513 -28.67702 -27.23387 -24.67717 -24.34454 -23.07150 -22.66322 -21.57474 -20.46279 -20.40557 -19.83970 -19.54071 -18.49304 -17.40989 -16.77208 -16.73023 -16.48194 -16.25168 -16.23160 -15.67945 -15.66127 -15.29622 -15.16654 -15.07119 -15.01647 -15.00418 -14.97477 -14.57006 -14.40329 -14.14024 -13.76505 -13.50040 -13.43717 -13.13899 -12.85084 -12.71405 -12.53884 -12.45379 -12.24727 -11.75788 -11.65350 -11.57965 -11.43454 -11.37428 -11.20720 -11.04012 -10.54225 -10.38489 -9.26144 -8.19720 -6.30917 0.64734 0.81419 1.40207 1.43405 1.51251 1.99371 2.41101 2.57295 2.89659 3.02461 3.04308 3.13570 3.56318 3.72382 3.85699 4.03026 4.24353 4.33962 4.37909 4.47235 4.51796 4.57986 4.65229 4.72008 4.84173 4.87977 4.92493 4.97812 5.05675 5.07562 5.16767 5.18129 5.29673 5.34194 5.46014 5.52283 5.74765 5.86094 5.89369 6.06075 6.21882 6.27068 6.51708 6.86093 7.38517 8.92092 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.003171 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.811615 B = 8829.077982 C = 9903.087355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.100 0.900 4 C -0.107 4.107 5 C 0.045 3.955 6 N -0.537 5.537 7 C 0.070 3.930 8 C -0.085 4.085 9 C 0.025 3.975 10 C -0.542 4.542 11 H 0.061 0.939 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.040 3.960 19 C 0.158 3.842 20 H 0.103 0.897 21 N -0.662 5.662 22 C 0.487 3.513 23 O -0.517 6.517 24 C 0.455 3.545 25 F -0.164 7.164 26 F -0.160 7.160 27 F -0.166 7.166 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.026 0.974 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.056 0.944 39 H -0.010 1.010 40 H -0.013 1.013 41 H 0.263 0.737 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.914 7.159 3.975 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.118 0.882 4 C -0.145 4.145 5 C -0.083 4.083 6 N -0.262 5.262 7 C -0.058 4.058 8 C -0.123 4.123 9 C -0.013 4.013 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.789 3.211 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.089 4.089 19 C 0.054 3.946 20 H 0.121 0.879 21 N -0.313 5.313 22 C 0.265 3.735 23 O -0.392 6.392 24 C 0.397 3.603 25 F -0.145 7.145 26 F -0.142 7.142 27 F -0.148 7.148 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.008 0.992 40 H 0.005 0.995 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -24.736 7.090 4.724 26.162 hybrid contribution 1.265 -0.448 -0.631 1.483 sum -23.471 6.643 4.093 24.734 Atomic orbital electron populations 1.21803 0.92897 1.02484 1.02945 1.21490 0.97335 1.00005 0.92309 0.88200 1.21686 0.92926 1.01515 0.98389 1.22292 0.96905 0.96453 0.92643 1.61935 1.12011 1.49776 1.02484 1.21957 0.87018 0.97793 0.99046 1.21361 0.95673 0.98276 0.97019 1.18976 0.92343 0.94852 0.95104 1.21657 0.92855 1.28414 1.15038 0.92127 1.25989 0.96709 0.98022 0.99134 1.70092 1.01174 1.46062 1.40208 0.85509 0.76975 0.79249 0.79379 1.18942 1.20920 1.19241 1.22502 0.95637 0.97792 0.92946 1.21343 0.91498 0.80701 1.01085 0.87925 1.45788 1.61064 1.16599 1.07884 1.20245 0.81018 0.86200 0.86059 1.90850 1.49201 1.66020 1.33165 1.20179 0.76962 0.88464 0.74672 1.93245 1.96138 1.89700 1.35432 1.93270 1.38070 1.96825 1.86019 1.93308 1.72191 1.73855 1.75397 0.92462 0.92193 0.90780 0.91040 0.88807 0.90982 0.94623 0.95563 0.92504 0.93165 0.92586 0.99189 0.99492 0.92808 0.92648 0.92122 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.02 71.98 0.65 -0.57 16 2 C -0.09 -1.04 2.58 -10.71 -0.03 -1.07 16 3 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.43 5.19 30.64 0.16 -1.27 16 5 C 0.04 0.94 5.30 86.31 0.46 1.40 16 6 N -0.54 -13.80 4.51 -896.14 -4.04 -17.84 16 7 C 0.07 2.36 4.96 86.30 0.43 2.78 16 8 C -0.09 -3.49 5.08 30.59 0.16 -3.33 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 13 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 14 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.04 0.89 5.09 86.33 0.44 1.33 16 19 C 0.16 2.58 2.28 45.05 0.10 2.68 16 20 H 0.10 1.69 7.58 -2.39 -0.02 1.67 16 21 N -0.66 -11.40 4.13 -442.27 -1.83 -13.23 16 22 C 0.49 10.65 7.32 87.66 0.64 11.29 16 23 O -0.52 -14.45 16.28 -3.04 -0.05 -14.50 16 24 C 0.46 9.42 3.43 71.23 0.24 9.66 16 25 F -0.16 -3.88 16.92 44.97 0.76 -3.12 16 26 F -0.16 -2.77 17.30 44.97 0.78 -1.99 16 27 F -0.17 -3.73 17.30 44.97 0.78 -2.95 16 28 H 0.06 0.49 7.29 -2.39 -0.02 0.47 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.94 6.68 -2.39 -0.02 0.92 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.76 6.22 -2.39 -0.01 1.74 16 34 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 36 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 2.18 6.43 -2.39 -0.02 2.16 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.61 8.01 -2.39 -0.02 1.59 16 44 H 0.42 5.93 6.67 -92.71 -0.62 5.31 16 Total: -1.00 -67.95 364.69 3.20 -64.76 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.40 Total: 5.80 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.09 Total: -6.06 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -5.58 Total: -88.36 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.05 Total: -14.50 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 2.32 Total: -8.07 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.95 3.20 -64.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852757830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.805 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds