Wall clock time and date at job start Tue Mar 31 2020 16:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41603 * 114.00370 * 2 1 4 4 C 1.46500 * 119.99849 * 275.08015 * 3 2 1 5 5 C 1.34777 * 120.00094 * 95.07671 * 3 2 1 6 6 O 1.21285 * 119.99880 * 6.49210 * 5 3 2 7 7 C 1.50699 * 119.99916 * 186.49803 * 5 3 2 8 8 H 1.08996 * 109.47329 * 46.38632 * 7 5 3 9 9 C 1.52999 * 109.46733 * 286.38896 * 7 5 3 10 10 N 1.46897 * 109.47041 * 166.39355 * 7 5 3 11 11 C 1.46903 * 111.00032 * 217.21654 * 10 7 5 12 12 H 1.08994 * 109.46806 * 27.56055 * 11 10 7 13 13 C 1.53002 * 109.46970 * 267.56342 * 11 10 7 14 14 C 1.50694 * 109.47495 * 147.56171 * 11 10 7 15 15 C 1.38300 * 119.93421 * 219.99778 * 14 11 10 16 16 C 1.38096 * 120.06869 * 179.97438 * 15 14 11 17 17 C 1.38875 * 119.93557 * 0.28327 * 16 15 14 18 18 O 1.35743 * 120.07123 * 179.71910 * 17 16 15 19 19 C 1.34832 * 117.00386 * 5.99685 * 18 17 16 20 20 H 1.08000 * 119.99592 * 4.86162 * 19 18 17 21 21 C 1.38650 * 120.00446 * 184.86022 * 19 18 17 22 22 N 1.31553 * 120.00123 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00018 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47112 * 89.99757 * 23 21 19 25 25 H 1.48500 * 109.47305 * 209.99827 * 23 21 19 26 26 H 1.48501 * 109.47320 * 330.00072 * 23 21 19 27 27 C 1.38882 * 119.85568 * 359.41906 * 17 16 15 28 28 C 1.38096 * 119.93342 * 0.58150 * 27 17 16 29 29 H 1.08995 * 109.47285 * 64.99874 * 1 2 3 30 30 H 1.08999 * 109.47471 * 185.00407 * 1 2 3 31 31 H 1.09005 * 109.47253 * 305.00029 * 1 2 3 32 32 H 1.08997 * 109.47399 * 269.99723 * 4 3 2 33 33 H 1.09008 * 109.46927 * 30.00208 * 4 3 2 34 34 H 1.09001 * 109.47075 * 149.99413 * 4 3 2 35 35 H 1.09003 * 109.47315 * 298.87126 * 9 7 5 36 36 H 1.08999 * 109.47335 * 58.87632 * 9 7 5 37 37 H 1.09006 * 109.47531 * 178.87545 * 9 7 5 38 38 H 1.00897 * 111.00609 * 341.16720 * 10 7 5 39 39 H 1.08996 * 109.47221 * 68.54244 * 13 11 10 40 40 H 1.08998 * 109.47147 * 188.54748 * 13 11 10 41 41 H 1.08997 * 109.47323 * 308.54379 * 13 11 10 42 42 H 1.08000 * 119.96414 * 0.02788 * 15 14 11 43 43 H 1.08003 * 120.03288 * 180.02562 * 16 15 14 44 44 H 0.97001 * 120.00413 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.03228 * 180.29394 * 27 17 16 46 46 H 1.07998 * 119.96637 * 179.74271 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.2003 2.0084 -1.2638 5 6 2.3735 1.8672 1.1626 6 8 2.3219 1.2327 2.1950 7 6 2.8495 3.2969 1.1798 8 1 2.1709 3.9129 0.5899 9 6 4.2563 3.3731 0.5832 10 7 2.8776 3.7870 2.5643 11 6 2.4628 5.1946 2.6331 12 1 1.7909 5.4162 1.8040 13 6 3.6968 6.0948 2.5440 14 6 1.7510 5.4455 3.9374 15 6 0.6322 6.2578 3.9679 16 6 -0.0225 6.4892 5.1616 17 6 0.4470 5.9100 6.3332 18 8 -0.1910 6.1402 7.5090 19 6 -1.3439 6.8371 7.4536 20 1 -1.7605 7.1167 6.4972 21 6 -1.9948 7.1949 8.6245 22 7 -3.1194 7.8753 8.5704 23 14 -1.2747 6.7107 10.2787 24 1 -0.3606 7.7806 10.7529 25 1 -2.3725 6.5259 11.2615 26 1 -0.5185 5.4405 10.1367 27 6 1.5672 5.0898 6.2982 28 6 2.2176 4.8622 5.1014 29 1 -0.3633 0.4343 -0.9313 30 1 -0.3634 -1.0237 0.0896 31 1 -0.3634 0.5895 0.8418 32 1 3.1839 1.7693 -1.6682 33 1 1.4316 1.7058 -1.9749 34 1 2.1306 3.0820 -1.0885 35 1 4.9391 2.7731 1.1848 36 1 4.2394 2.9908 -0.4374 37 1 4.5928 4.4099 0.5772 38 1 2.3047 3.2117 3.1633 39 1 4.1251 6.0263 1.5441 40 1 3.4092 7.1265 2.7463 41 1 4.4352 5.7728 3.2783 42 1 0.2696 6.7110 3.0571 43 1 -0.8965 7.1234 5.1846 44 1 -3.5745 8.1259 9.3895 45 1 1.9320 4.6341 7.2069 46 1 3.0912 4.2278 5.0744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858578741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:58 Heat of formation + Delta-G solvation = -39.462413 kcal Electronic energy + Delta-G solvation = -27205.285077 eV Core-core repulsion = 23290.772175 eV Total energy + Delta-G solvation = -3914.512901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35835 -40.89266 -39.17032 -38.25722 -36.96407 -35.15629 -34.45665 -32.92255 -31.86381 -29.76262 -29.45382 -28.28372 -27.32643 -27.23225 -24.56138 -23.83013 -23.45562 -21.41277 -20.81705 -19.75962 -19.19301 -18.72584 -18.37063 -17.24970 -16.96400 -16.75068 -16.20402 -16.02381 -15.70304 -15.62985 -15.42533 -15.21154 -15.06699 -14.88418 -14.38378 -14.17862 -14.16771 -13.99450 -13.86931 -13.55835 -13.41423 -13.25045 -13.05628 -12.95134 -12.75796 -12.56051 -12.45447 -12.35013 -12.14034 -12.01547 -11.70067 -11.54514 -11.32307 -10.91160 -10.81340 -10.08339 -9.82604 -9.51600 -9.01756 -8.52262 -6.24325 0.54723 0.59342 0.72301 1.29677 1.33430 1.35516 1.50279 2.26390 2.72662 3.01459 3.09158 3.12694 3.20705 3.52829 3.82135 3.99117 4.06101 4.16748 4.21581 4.25631 4.28433 4.36372 4.41466 4.54965 4.56667 4.61987 4.64356 4.72260 4.74516 4.84752 4.86632 4.95946 5.06018 5.13470 5.22361 5.35952 5.42652 5.52727 5.57128 5.59556 5.68692 5.76672 5.88901 5.96259 6.16580 6.22678 6.27259 6.82445 6.96745 7.57523 8.59416 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.002640 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.480535 B =10605.503895 C =11309.847430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.170 6.170 3 N -0.486 5.486 4 C 0.064 3.936 5 C 0.503 3.497 6 O -0.564 6.564 7 C 0.080 3.920 8 H 0.107 0.893 9 C -0.137 4.137 10 N -0.674 5.674 11 C 0.143 3.857 12 H 0.072 0.928 13 C -0.130 4.130 14 C -0.162 4.162 15 C -0.064 4.064 16 C -0.235 4.235 17 C 0.121 3.879 18 O -0.247 6.247 19 C -0.398 4.398 20 H 0.082 0.918 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.968 3.032 24 H -0.265 1.265 25 H -0.266 1.266 26 H -0.265 1.265 27 C -0.195 4.195 28 C -0.054 4.054 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.346 0.654 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.285 0.715 45 H 0.123 0.877 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.252 -8.807 -24.975 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.173 6.173 3 N -0.266 5.266 4 C -0.075 4.075 5 C 0.292 3.708 6 O -0.441 6.441 7 C -0.033 4.033 8 H 0.125 0.875 9 C -0.195 4.195 10 N -0.310 5.310 11 C 0.034 3.966 12 H 0.090 0.910 13 C -0.188 4.188 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.254 4.254 17 C 0.072 3.928 18 O -0.154 6.154 19 C -0.475 4.475 20 H 0.099 0.901 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.190 1.190 27 C -0.214 4.214 28 C -0.072 4.072 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.168 0.832 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.877 -9.171 -24.130 29.308 hybrid contribution -1.884 -0.160 0.983 2.131 sum 11.993 -9.331 -23.147 27.689 Atomic orbital electron populations 1.23449 0.80148 1.04930 1.01478 1.90616 1.21640 1.08144 1.96853 1.50156 1.58403 1.09642 1.08432 1.22613 1.04447 0.97319 0.83147 1.22053 0.76454 0.90094 0.82159 1.90727 1.54607 1.64650 1.34068 1.21896 1.00883 0.88196 0.92304 0.87537 1.21948 0.92292 1.04578 1.00643 1.60839 1.60171 1.03142 1.06798 1.20481 0.95642 0.87847 0.92588 0.91029 1.21838 0.96333 0.97743 1.02897 1.19914 0.97863 1.02522 0.96018 1.20944 0.94037 0.96601 0.96645 1.21272 1.04067 1.06532 0.93574 1.19677 0.92685 0.94720 0.85761 1.83528 1.35483 1.67742 1.28665 1.20702 0.97107 1.33452 0.96205 0.90070 1.25246 0.95594 0.95436 1.02446 1.69719 1.17279 1.38363 1.30958 0.85248 0.78407 0.79635 0.77625 1.19006 1.19086 1.18990 1.20511 0.97307 1.03467 1.00135 1.20824 0.98480 0.97530 0.90396 0.90618 0.86108 0.94691 0.89451 0.88752 0.87183 0.93138 0.89409 0.89109 0.83184 0.90184 0.92633 0.92678 0.84017 0.87209 0.90541 0.85929 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.45 113.37 1.30 1.26 16 2 O -0.17 -3.71 11.19 -21.50 -0.24 -3.95 16 3 N -0.49 -8.67 3.36 -484.51 -1.63 -10.30 16 4 C 0.06 0.39 9.44 127.77 1.21 1.60 16 5 C 0.50 11.52 7.06 87.66 0.62 12.14 16 6 O -0.56 -19.05 16.07 14.25 0.23 -18.83 16 7 C 0.08 1.26 2.28 44.17 0.10 1.36 16 8 H 0.11 1.06 5.89 -2.39 -0.01 1.05 16 9 C -0.14 -1.48 9.28 71.98 0.67 -0.81 16 10 N -0.67 -14.59 5.58 -477.18 -2.66 -17.25 16 11 C 0.14 2.94 2.85 44.17 0.13 3.06 16 12 H 0.07 1.19 7.04 -2.39 -0.02 1.18 16 13 C -0.13 -2.27 9.41 71.98 0.68 -1.59 16 14 C -0.16 -4.78 4.71 -19.84 -0.09 -4.87 16 15 C -0.06 -2.13 9.66 22.25 0.21 -1.91 16 16 C -0.24 -10.31 9.13 22.39 0.20 -10.10 16 17 C 0.12 5.78 6.65 22.58 0.15 5.93 16 18 O -0.25 -13.74 8.59 -22.68 -0.19 -13.93 16 19 C -0.40 -23.81 9.90 67.92 0.67 -23.14 16 20 H 0.08 5.05 5.52 -2.91 -0.02 5.03 16 21 C 0.01 0.66 5.49 84.83 0.47 1.12 16 22 N -0.92 -55.54 13.96 21.61 0.30 -55.24 16 23 Si 0.97 46.35 28.62 68.60 1.96 48.32 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 C -0.20 -7.88 9.99 22.39 0.22 -7.66 16 28 C -0.05 -1.78 8.85 22.25 0.20 -1.58 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 0.30 7.43 -2.39 -0.02 0.28 16 33 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.11 0.17 5.87 -2.39 -0.01 0.15 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.48 5.84 -2.39 -0.01 0.46 16 37 H 0.09 0.73 6.35 -2.38 -0.02 0.72 16 38 H 0.35 9.68 6.19 -89.70 -0.56 9.12 16 39 H 0.08 0.94 6.46 -2.39 -0.02 0.92 16 40 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.14 3.73 8.03 -2.91 -0.02 3.70 16 43 H 0.11 5.27 5.71 -2.91 -0.02 5.25 16 44 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 46 H 0.14 4.15 7.66 -2.91 -0.02 4.13 16 Total: -1.00 -78.52 376.21 4.95 -73.57 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.45 Total: 22.79 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 6.73 Total: -25.19 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -3.99 Total: -82.79 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.21 Total: -36.71 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.32 kcal Total: -78.52 4.95 -73.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858578741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.112 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds