Wall clock time and date at job start Tue Mar 31 2020 16:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41594 * 114.00116 * 2 1 4 4 C 1.46496 * 119.99787 * 265.27336 * 3 2 1 5 5 C 1.34774 * 120.00244 * 85.27432 * 3 2 1 6 6 O 1.21279 * 120.00196 * 5.60542 * 5 3 2 7 7 C 1.50705 * 119.99932 * 185.59975 * 5 3 2 8 8 H 1.08998 * 109.47138 * 48.75261 * 7 5 3 9 9 C 1.52998 * 109.47354 * 288.75052 * 7 5 3 10 10 N 1.46902 * 109.46620 * 168.75264 * 7 5 3 11 11 C 1.46900 * 110.99602 * 204.99840 * 10 7 5 12 12 H 1.08997 * 109.47452 * 325.00438 * 11 10 7 13 13 C 1.53002 * 109.47050 * 85.00298 * 11 10 7 14 14 C 1.50700 * 109.47294 * 204.99763 * 11 10 7 15 15 C 1.38293 * 119.93164 * 319.73301 * 14 11 10 16 16 C 1.38101 * 120.06920 * 179.72031 * 15 14 11 17 17 C 1.38885 * 119.92855 * 0.54787 * 16 15 14 18 18 O 1.35754 * 120.06557 * 179.74718 * 17 16 15 19 19 C 1.34833 * 116.99393 * 185.60223 * 18 17 16 20 20 H 1.07997 * 120.00564 * 5.31377 * 19 18 17 21 21 C 1.38663 * 119.99615 * 185.31922 * 19 18 17 22 22 N 1.31548 * 119.99953 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99677 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46869 * 90.00055 * 23 21 19 25 25 H 1.48496 * 109.47095 * 209.99430 * 23 21 19 26 26 H 1.48491 * 109.47255 * 330.00005 * 23 21 19 27 27 C 1.38872 * 119.86301 * 359.72347 * 17 16 15 28 28 C 1.38098 * 119.93059 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47089 * 304.98864 * 1 2 3 30 30 H 1.09000 * 109.46926 * 64.98717 * 1 2 3 31 31 H 1.09005 * 109.47182 * 184.98780 * 1 2 3 32 32 H 1.09004 * 109.47247 * 270.00013 * 4 3 2 33 33 H 1.08996 * 109.47273 * 30.00210 * 4 3 2 34 34 H 1.09003 * 109.47456 * 150.00428 * 4 3 2 35 35 H 1.09002 * 109.47059 * 296.25933 * 9 7 5 36 36 H 1.08994 * 109.47458 * 176.25605 * 9 7 5 37 37 H 1.08996 * 109.46943 * 56.25197 * 9 7 5 38 38 H 1.00894 * 111.00390 * 328.95183 * 10 7 5 39 39 H 1.09000 * 109.47477 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46968 * 299.99987 * 13 11 10 41 41 H 1.08995 * 109.47395 * 59.99854 * 13 11 10 42 42 H 1.08002 * 119.96941 * 359.97438 * 15 14 11 43 43 H 1.07999 * 120.03782 * 180.27096 * 16 15 14 44 44 H 0.97005 * 120.00291 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03415 * 179.97438 * 27 17 16 46 46 H 1.08005 * 119.97025 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3984 1.9201 -1.2644 5 6 2.1912 1.9483 1.1632 6 8 1.9609 1.3919 2.2159 7 6 2.6859 3.3718 1.1557 8 1 2.0959 3.9578 0.4510 9 6 4.1567 3.3985 0.7353 10 7 2.5509 3.9441 2.5019 11 6 2.4423 5.4079 2.4432 12 1 3.0607 5.7857 1.6291 13 6 0.9838 5.8017 2.2009 14 6 2.9122 5.9992 3.7472 15 6 2.5786 5.3880 4.9421 16 6 3.0126 5.9243 6.1384 17 6 3.7753 7.0850 6.1414 18 8 4.1990 7.6173 7.3161 19 6 4.8348 8.8048 7.2558 20 1 4.9112 9.3294 6.3149 21 6 5.3908 9.3525 8.4020 22 7 5.2974 8.7137 9.5482 23 14 6.2722 10.9973 8.3184 24 1 5.3005 12.0927 8.5657 25 1 7.3393 11.0400 9.3502 26 1 6.8773 11.1668 6.9730 27 6 4.1039 7.6995 4.9402 28 6 3.6713 7.1554 3.7469 29 1 -0.3633 0.5893 0.8419 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3634 -1.0238 0.0894 32 1 3.4316 1.6589 -1.4933 33 1 1.7481 1.5648 -2.0638 34 1 2.3083 3.0029 -1.1769 35 1 4.7559 2.8686 1.4758 36 1 4.4960 4.4320 0.6655 37 1 4.2662 2.9138 -0.2348 38 1 1.7635 3.5423 2.9884 39 1 0.9032 6.8879 2.1569 40 1 0.6438 5.3740 1.2577 41 1 0.3653 5.4239 3.0150 42 1 1.9815 4.4881 4.9394 43 1 2.7554 5.4441 7.0710 44 1 5.6860 9.0969 10.3501 45 1 4.6965 8.6024 4.9393 46 1 3.9268 7.6326 2.8123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858578742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:02 Heat of formation + Delta-G solvation = -18.099388 kcal Electronic energy + Delta-G solvation = -27023.411171 eV Core-core repulsion = 23109.824640 eV Total energy + Delta-G solvation = -3913.586531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.44871 -39.10538 -37.84988 -37.10515 -35.72824 -34.38548 -32.38523 -31.79084 -30.13926 -28.56787 -27.83247 -27.59966 -26.79556 -25.36977 -24.10578 -22.37731 -21.82845 -20.07212 -20.00895 -18.01277 -17.83174 -17.59754 -16.79987 -16.50233 -16.16847 -15.24342 -14.94455 -14.59907 -14.50287 -14.40837 -14.01359 -13.94150 -13.71600 -13.42406 -13.40783 -13.32572 -12.98126 -12.75730 -12.62574 -12.53001 -12.39899 -12.18023 -12.10732 -11.75913 -11.61658 -11.35750 -11.15086 -10.96425 -10.64483 -10.62120 -10.44898 -10.36816 -9.93315 -9.36282 -9.29733 -8.78312 -8.48521 -8.08256 -7.09152 -6.40242 -3.98850 1.40024 2.19480 2.30716 2.39152 3.15210 3.15873 3.20783 3.85087 4.00310 4.05162 4.16261 4.57112 4.62423 4.77922 4.79273 4.80944 4.87970 4.94578 5.07140 5.09222 5.14795 5.17540 5.26941 5.33734 5.37667 5.42110 5.58200 5.67991 5.77901 5.81962 5.97615 6.05693 6.12036 6.27553 6.30219 6.48732 6.71252 6.78612 6.87883 7.02217 7.13287 7.32233 7.34959 7.47869 7.51372 7.79184 7.90585 8.04898 9.05462 9.77495 10.78041 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030602 B = 0.002229 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.761925 B =12561.475926 C =12834.057322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.139 6.139 3 N -0.489 5.489 4 C 0.078 3.922 5 C 0.513 3.487 6 O -0.503 6.503 7 C 0.078 3.922 8 H 0.070 0.930 9 C -0.144 4.144 10 N -0.659 5.659 11 C 0.142 3.858 12 H 0.079 0.921 13 C -0.178 4.178 14 C -0.167 4.167 15 C -0.051 4.051 16 C -0.193 4.193 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.233 4.233 28 C -0.067 4.067 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.352 0.648 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 -10.078 -24.266 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.141 6.141 3 N -0.271 5.271 4 C -0.062 4.062 5 C 0.301 3.699 6 O -0.375 6.375 7 C -0.035 4.035 8 H 0.087 0.913 9 C -0.202 4.202 10 N -0.294 5.294 11 C 0.033 3.967 12 H 0.097 0.903 13 C -0.237 4.237 14 C -0.169 4.169 15 C -0.070 4.070 16 C -0.213 4.213 17 C 0.100 3.900 18 O -0.083 6.083 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.253 4.253 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.174 0.826 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.428 -10.622 -23.071 26.463 hybrid contribution -0.766 0.896 -0.547 1.299 sum -8.194 -9.726 -23.618 26.825 Atomic orbital electron populations 1.23314 0.81727 1.03961 1.00990 1.90668 1.20007 1.06742 1.96716 1.49921 1.59680 1.10175 1.07335 1.22196 1.01438 0.97899 0.84709 1.21321 0.77550 0.88312 0.82678 1.90755 1.49232 1.67361 1.30151 1.21514 0.98827 0.89543 0.93622 0.91289 1.21906 0.93288 1.03720 1.01299 1.60612 1.50467 1.05034 1.13305 1.20277 0.94470 0.85650 0.96326 0.90270 1.22538 0.97707 1.02824 1.00668 1.18956 1.06461 0.98386 0.93072 1.20341 0.97944 0.97504 0.91183 1.20210 1.04974 0.97925 0.98168 1.19408 0.92072 0.92020 0.86466 1.83998 1.64631 1.34658 1.25031 1.21299 1.34676 0.93844 0.96839 0.89176 1.25283 0.97199 0.99742 0.94393 1.70039 1.42510 1.38176 0.99125 0.85725 0.78892 0.80385 0.78485 1.19950 1.20308 1.19250 1.21094 1.08059 1.04099 0.92026 1.20507 0.96447 0.94878 0.96715 0.92646 0.93265 0.87637 0.91014 0.90373 0.89558 0.90722 0.90858 0.91889 0.82618 0.91466 0.93689 0.92165 0.87290 0.86703 0.92084 0.85690 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 11.39 101.05 1.15 1.14 16 2 O -0.14 -1.50 11.20 -29.58 -0.33 -1.83 16 3 N -0.49 -4.69 3.38 -67.08 -0.23 -4.92 16 4 C 0.08 0.39 9.41 59.84 0.56 0.95 16 5 C 0.51 6.10 6.99 -10.98 -0.08 6.02 16 6 O -0.50 -8.15 16.25 -12.56 -0.20 -8.36 16 7 C 0.08 0.77 2.01 -68.86 -0.14 0.63 16 8 H 0.07 0.51 5.96 -51.93 -0.31 0.20 16 9 C -0.14 -1.26 9.12 37.16 0.34 -0.92 16 10 N -0.66 -8.35 5.33 -102.17 -0.55 -8.89 16 11 C 0.14 1.77 2.60 -68.86 -0.18 1.59 16 12 H 0.08 0.89 7.00 -51.93 -0.36 0.52 16 13 C -0.18 -1.92 9.12 37.16 0.34 -1.58 16 14 C -0.17 -2.79 4.96 -104.58 -0.52 -3.31 16 15 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 16 C -0.19 -4.22 9.99 -39.39 -0.39 -4.61 16 17 C 0.15 3.78 6.65 -39.11 -0.26 3.52 16 18 O -0.18 -5.22 9.76 0.03 0.00 -5.22 16 19 C -0.39 -11.03 9.44 30.89 0.29 -10.73 16 20 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 23 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.23 -5.08 9.13 -39.40 -0.36 -5.44 16 28 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.30 7.31 -51.93 -0.38 -0.08 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.28 5.90 -51.93 -0.31 -0.03 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.61 7.47 -51.93 -0.39 0.22 16 37 H 0.06 0.38 5.57 -51.93 -0.29 0.09 16 38 H 0.35 4.74 6.72 -39.29 -0.26 4.48 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.39 7.43 -51.93 -0.39 0.00 16 41 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 42 H 0.11 1.80 7.25 -52.49 -0.38 1.42 16 43 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 46 H 0.10 1.54 8.03 -52.48 -0.42 1.12 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -34.86 378.76 -6.54 -41.39 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.58 Total: 6.04 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.09 Total: -14.69 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.01 Total: -38.74 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.54 Total: -15.40 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.86 -6.54 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858578742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.294 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds