Wall clock time and date at job start Tue Mar 31 2020 16:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41594 * 114.00116 * 2 1 4 4 C 1.46496 * 119.99787 * 265.27336 * 3 2 1 5 5 C 1.34774 * 120.00244 * 85.27432 * 3 2 1 6 6 O 1.21279 * 120.00196 * 5.60542 * 5 3 2 7 7 C 1.50705 * 119.99932 * 185.59975 * 5 3 2 8 8 H 1.08998 * 109.47138 * 48.75261 * 7 5 3 9 9 C 1.52998 * 109.47354 * 288.75052 * 7 5 3 10 10 N 1.46902 * 109.46620 * 168.75264 * 7 5 3 11 11 C 1.46900 * 110.99602 * 204.99840 * 10 7 5 12 12 H 1.08997 * 109.47452 * 325.00438 * 11 10 7 13 13 C 1.53002 * 109.47050 * 85.00298 * 11 10 7 14 14 C 1.50700 * 109.47294 * 204.99763 * 11 10 7 15 15 C 1.38293 * 119.93164 * 319.73301 * 14 11 10 16 16 C 1.38101 * 120.06920 * 179.72031 * 15 14 11 17 17 C 1.38885 * 119.92855 * 0.54787 * 16 15 14 18 18 O 1.35754 * 120.06557 * 179.74718 * 17 16 15 19 19 C 1.34833 * 116.99393 * 185.60223 * 18 17 16 20 20 H 1.07997 * 120.00564 * 5.31377 * 19 18 17 21 21 C 1.38663 * 119.99615 * 185.31922 * 19 18 17 22 22 N 1.31548 * 119.99953 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99677 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46869 * 90.00055 * 23 21 19 25 25 H 1.48496 * 109.47095 * 209.99430 * 23 21 19 26 26 H 1.48491 * 109.47255 * 330.00005 * 23 21 19 27 27 C 1.38872 * 119.86301 * 359.72347 * 17 16 15 28 28 C 1.38098 * 119.93059 * 0.02562 * 27 17 16 29 29 H 1.08998 * 109.47089 * 304.98864 * 1 2 3 30 30 H 1.09000 * 109.46926 * 64.98717 * 1 2 3 31 31 H 1.09005 * 109.47182 * 184.98780 * 1 2 3 32 32 H 1.09004 * 109.47247 * 270.00013 * 4 3 2 33 33 H 1.08996 * 109.47273 * 30.00210 * 4 3 2 34 34 H 1.09003 * 109.47456 * 150.00428 * 4 3 2 35 35 H 1.09002 * 109.47059 * 296.25933 * 9 7 5 36 36 H 1.08994 * 109.47458 * 176.25605 * 9 7 5 37 37 H 1.08996 * 109.46943 * 56.25197 * 9 7 5 38 38 H 1.00894 * 111.00390 * 328.95183 * 10 7 5 39 39 H 1.09000 * 109.47477 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46968 * 299.99987 * 13 11 10 41 41 H 1.08995 * 109.47395 * 59.99854 * 13 11 10 42 42 H 1.08002 * 119.96941 * 359.97438 * 15 14 11 43 43 H 1.07999 * 120.03782 * 180.27096 * 16 15 14 44 44 H 0.97005 * 120.00291 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03415 * 179.97438 * 27 17 16 46 46 H 1.08005 * 119.97025 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3984 1.9201 -1.2644 5 6 2.1912 1.9483 1.1632 6 8 1.9609 1.3919 2.2159 7 6 2.6859 3.3718 1.1557 8 1 2.0959 3.9578 0.4510 9 6 4.1567 3.3985 0.7353 10 7 2.5509 3.9441 2.5019 11 6 2.4423 5.4079 2.4432 12 1 3.0607 5.7857 1.6291 13 6 0.9838 5.8017 2.2009 14 6 2.9122 5.9992 3.7472 15 6 2.5786 5.3880 4.9421 16 6 3.0126 5.9243 6.1384 17 6 3.7753 7.0850 6.1414 18 8 4.1990 7.6173 7.3161 19 6 4.8348 8.8048 7.2558 20 1 4.9112 9.3294 6.3149 21 6 5.3908 9.3525 8.4020 22 7 5.2974 8.7137 9.5482 23 14 6.2722 10.9973 8.3184 24 1 5.3005 12.0927 8.5657 25 1 7.3393 11.0400 9.3502 26 1 6.8773 11.1668 6.9730 27 6 4.1039 7.6995 4.9402 28 6 3.6713 7.1554 3.7469 29 1 -0.3633 0.5893 0.8419 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3634 -1.0238 0.0894 32 1 3.4316 1.6589 -1.4933 33 1 1.7481 1.5648 -2.0638 34 1 2.3083 3.0029 -1.1769 35 1 4.7559 2.8686 1.4758 36 1 4.4960 4.4320 0.6655 37 1 4.2662 2.9138 -0.2348 38 1 1.7635 3.5423 2.9884 39 1 0.9032 6.8879 2.1569 40 1 0.6438 5.3740 1.2577 41 1 0.3653 5.4239 3.0150 42 1 1.9815 4.4881 4.9394 43 1 2.7554 5.4441 7.0710 44 1 5.6860 9.0969 10.3501 45 1 4.6965 8.6024 4.9393 46 1 3.9268 7.6326 2.8123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858578742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:01 Heat of formation + Delta-G solvation = -42.386714 kcal Electronic energy + Delta-G solvation = -27024.464349 eV Core-core repulsion = 23109.824640 eV Total energy + Delta-G solvation = -3914.639708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31258 -40.73241 -39.05485 -38.16954 -36.99574 -35.19709 -34.25456 -32.86756 -31.75981 -29.80045 -28.90115 -28.13287 -27.44133 -27.32289 -24.97743 -23.78629 -23.28655 -21.42264 -20.81571 -19.71875 -18.94395 -18.62491 -18.24628 -17.27147 -17.00322 -16.46513 -16.22120 -16.11983 -15.57183 -15.48187 -15.45947 -15.04731 -15.01730 -14.66720 -14.38338 -14.24937 -14.07372 -13.98027 -13.60647 -13.49252 -13.44347 -13.22519 -13.07323 -12.91300 -12.80891 -12.58400 -12.45552 -12.23883 -12.13322 -12.04365 -11.71225 -11.62971 -11.13958 -10.79609 -10.74983 -10.06044 -9.71187 -9.39842 -8.82267 -8.44353 -6.12286 0.66464 0.70361 0.80527 1.35971 1.36419 1.46082 1.54162 2.19962 2.82693 3.05352 3.21461 3.29036 3.55981 3.57267 3.94183 3.98181 4.14583 4.20924 4.24049 4.28659 4.31688 4.39412 4.40701 4.42334 4.57756 4.64065 4.65018 4.70632 4.76329 4.83339 4.89209 4.96082 4.97833 5.15036 5.18995 5.29747 5.34485 5.37664 5.59121 5.65438 5.76680 5.80828 6.02185 6.06337 6.18827 6.30821 6.33884 6.99654 7.00334 7.83763 8.79502 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030602 B = 0.002229 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.761925 B =12561.475926 C =12834.057322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.170 6.170 3 N -0.485 5.485 4 C 0.066 3.934 5 C 0.508 3.492 6 O -0.562 6.562 7 C 0.084 3.916 8 H 0.109 0.891 9 C -0.143 4.143 10 N -0.681 5.681 11 C 0.146 3.854 12 H 0.109 0.891 13 C -0.175 4.175 14 C -0.140 4.140 15 C -0.050 4.050 16 C -0.210 4.210 17 C 0.110 3.890 18 O -0.237 6.237 19 C -0.410 4.410 20 H 0.103 0.897 21 C -0.028 4.028 22 N -0.924 5.924 23 Si 1.021 2.979 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.250 1.250 27 C -0.240 4.240 28 C -0.061 4.061 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.345 0.655 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.271 0.729 45 H 0.120 0.880 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 -9.311 -29.560 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.172 6.172 3 N -0.266 5.266 4 C -0.072 4.072 5 C 0.297 3.703 6 O -0.438 6.438 7 C -0.028 4.028 8 H 0.127 0.873 9 C -0.201 4.201 10 N -0.316 5.316 11 C 0.037 3.963 12 H 0.127 0.873 13 C -0.233 4.233 14 C -0.141 4.141 15 C -0.068 4.068 16 C -0.230 4.230 17 C 0.060 3.940 18 O -0.144 6.144 19 C -0.487 4.487 20 H 0.120 0.880 21 C -0.225 4.225 22 N -0.563 5.563 23 Si 0.840 3.160 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.174 1.174 27 C -0.259 4.259 28 C -0.079 4.079 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.166 0.834 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.146 0.854 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.876 -9.884 -28.480 31.158 hybrid contribution -0.804 0.375 0.764 1.171 sum -8.680 -9.509 -27.716 30.561 Atomic orbital electron populations 1.23438 0.80083 1.04927 1.01438 1.90605 1.21787 1.07980 1.96852 1.50113 1.58701 1.09431 1.08325 1.22601 1.02478 0.99084 0.83083 1.21773 0.76871 0.89094 0.82525 1.90731 1.52013 1.68737 1.32336 1.21613 0.99957 0.88454 0.92812 0.87345 1.21948 0.91893 1.04370 1.01874 1.60496 1.50566 1.04991 1.15531 1.20309 0.96172 0.85664 0.94132 0.87331 1.22482 0.95832 1.03127 1.01900 1.19589 1.02929 0.96865 0.94693 1.20617 0.97548 0.97994 0.90683 1.20406 1.05450 0.97732 0.99365 1.19919 0.93812 0.93580 0.86700 1.83956 1.67175 1.35778 1.27526 1.21826 1.34742 0.94366 0.97721 0.87979 1.26647 0.97937 1.04239 0.93633 1.70201 1.45049 1.40877 1.00171 0.84559 0.77550 0.74656 0.79257 1.18794 1.19801 1.17380 1.21239 1.08210 1.03980 0.92507 1.20945 0.95224 0.94862 0.96897 0.94431 0.90811 0.86141 0.89945 0.88516 0.87032 0.93794 0.89646 0.88963 0.83352 0.91196 0.90578 0.93412 0.85370 0.87924 0.91962 0.86258 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 11.39 113.37 1.29 1.27 16 2 O -0.17 -3.41 11.20 -21.45 -0.24 -3.65 16 3 N -0.49 -8.00 3.38 -484.53 -1.64 -9.64 16 4 C 0.07 0.35 9.41 127.77 1.20 1.55 16 5 C 0.51 11.03 6.99 87.66 0.61 11.65 16 6 O -0.56 -18.18 16.25 14.29 0.23 -17.94 16 7 C 0.08 1.32 2.01 44.17 0.09 1.41 16 8 H 0.11 0.88 5.96 -2.39 -0.01 0.87 16 9 C -0.14 -1.93 9.12 71.98 0.66 -1.28 16 10 N -0.68 -15.17 5.33 -477.15 -2.55 -17.72 16 11 C 0.15 2.98 2.60 44.17 0.11 3.09 16 12 H 0.11 1.68 7.00 -2.39 -0.02 1.67 16 13 C -0.17 -2.93 9.12 71.98 0.66 -2.27 16 14 C -0.14 -4.27 4.96 -19.83 -0.10 -4.37 16 15 C -0.05 -1.82 9.31 22.25 0.21 -1.61 16 16 C -0.21 -9.62 9.99 22.39 0.22 -9.40 16 17 C 0.11 5.68 6.65 22.58 0.15 5.83 16 18 O -0.24 -14.80 9.76 -22.82 -0.22 -15.02 16 19 C -0.41 -24.40 9.44 67.92 0.64 -23.76 16 20 H 0.10 5.52 5.29 -2.91 -0.02 5.50 16 21 C -0.03 -1.61 5.49 84.84 0.47 -1.15 16 22 N -0.92 -58.31 13.67 21.61 0.30 -58.01 16 23 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 27 C -0.24 -10.48 9.13 22.39 0.20 -10.28 16 28 C -0.06 -2.01 9.66 22.25 0.21 -1.80 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 0.30 7.31 -2.38 -0.02 0.29 16 33 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.11 0.03 5.90 -2.39 -0.01 0.02 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.97 7.47 -2.39 -0.02 0.95 16 37 H 0.09 0.68 5.57 -2.39 -0.01 0.67 16 38 H 0.35 8.66 6.72 -89.70 -0.60 8.06 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 0.85 7.43 -2.38 -0.02 0.84 16 41 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 42 H 0.13 4.15 7.25 -2.91 -0.02 4.12 16 43 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 44 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 45 H 0.12 5.26 5.71 -2.91 -0.02 5.24 16 46 H 0.15 3.61 8.03 -2.91 -0.02 3.59 16 Total: -1.00 -85.15 378.76 4.94 -80.21 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.40 Total: 27.35 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 6.63 Total: -31.11 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -3.89 Total: -85.38 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.23 Total: -36.61 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -85.15 4.94 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858578742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.827 kcal (2) G-P(sol) polarization free energy of solvation -85.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds