Wall clock time and date at job start Tue Mar 31 2020 16:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41606 * 113.99982 * 2 1 4 4 C 1.46500 * 119.99568 * 270.00120 * 3 2 1 5 5 C 1.34771 * 119.99914 * 89.99715 * 3 2 1 6 6 O 1.21288 * 119.99641 * 180.02562 * 5 3 2 7 7 C 1.50694 * 120.00387 * 0.27684 * 5 3 2 8 8 H 1.09000 * 109.47376 * 299.72684 * 7 5 3 9 9 C 1.53005 * 109.46758 * 59.72275 * 7 5 3 10 10 N 1.46897 * 109.47395 * 179.72177 * 7 5 3 11 11 C 1.46904 * 110.99890 * 150.50327 * 10 7 5 12 12 H 1.09000 * 109.46822 * 39.81379 * 11 10 7 13 13 C 1.52999 * 109.46914 * 159.80528 * 11 10 7 14 14 C 1.50692 * 109.47289 * 279.80636 * 11 10 7 15 15 C 1.38301 * 119.93453 * 319.72964 * 14 11 10 16 16 C 1.38097 * 120.07147 * 179.72405 * 15 14 11 17 17 C 1.38877 * 119.93045 * 0.54644 * 16 15 14 18 18 O 1.35752 * 120.07363 * 179.74947 * 17 16 15 19 19 C 1.34822 * 117.00093 * 185.78864 * 18 17 16 20 20 H 1.07996 * 120.00562 * 5.47992 * 19 18 17 21 21 C 1.38663 * 119.99657 * 185.47692 * 19 18 17 22 22 N 1.31556 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47342 * 60.00491 * 23 21 19 25 25 H 1.48504 * 109.47224 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47628 * 300.00532 * 23 21 19 27 27 C 1.38886 * 119.85925 * 359.72644 * 17 16 15 28 28 C 1.38090 * 119.93199 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47286 * 300.00041 * 1 2 3 30 30 H 1.09003 * 109.47262 * 59.99823 * 1 2 3 31 31 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 269.99514 * 4 3 2 33 33 H 1.09000 * 109.47576 * 30.00185 * 4 3 2 34 34 H 1.09002 * 109.47157 * 149.99755 * 4 3 2 35 35 H 1.08993 * 109.47110 * 64.92978 * 9 7 5 36 36 H 1.09009 * 109.46894 * 184.92705 * 9 7 5 37 37 H 1.09001 * 109.47148 * 304.92414 * 9 7 5 38 38 H 1.00903 * 111.00015 * 26.55210 * 10 7 5 39 39 H 1.09002 * 109.47243 * 55.01200 * 13 11 10 40 40 H 1.08997 * 109.47279 * 175.00570 * 13 11 10 41 41 H 1.09000 * 109.47821 * 295.00889 * 13 11 10 42 42 H 1.08002 * 119.96046 * 359.97438 * 15 14 11 43 43 H 1.08000 * 120.03508 * 180.26838 * 16 15 14 44 44 H 0.96997 * 119.99359 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.02796 * 179.97438 * 27 17 16 46 46 H 1.08004 * 119.96804 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9627 -1.2688 5 6 2.2790 1.9092 1.1672 6 8 2.7718 3.0175 1.1671 7 6 1.9782 1.2184 2.4722 8 1 0.9106 1.0078 2.5343 9 6 2.7621 -0.0934 2.5473 10 7 2.3714 2.0883 3.5887 11 6 1.5298 1.8444 4.7678 12 1 1.3457 0.7747 4.8677 13 6 2.2443 2.3579 6.0195 14 6 0.2174 2.5672 4.6065 15 6 0.1922 3.8391 4.0641 16 6 -1.0095 4.5018 3.9097 17 6 -2.1924 3.8942 4.3101 18 8 -3.3747 4.5451 4.1644 19 6 -4.4686 3.9505 4.6817 20 1 -4.3679 3.0444 5.2607 21 6 -5.7230 4.5024 4.4705 22 7 -5.8457 5.6059 3.7649 23 14 -7.2386 3.6783 5.1867 24 1 -7.1175 3.6185 6.6655 25 1 -8.4470 4.4596 4.8198 26 1 -7.3565 2.3011 4.6437 27 6 -2.1631 2.6191 4.8597 28 6 -0.9588 1.9596 5.0067 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.3156 1.7108 -1.5834 33 1 1.5938 1.6336 -2.0284 34 1 2.2207 3.0418 -1.1385 35 1 3.8301 0.1225 2.5735 36 1 2.4786 -0.6349 3.4499 37 1 2.5358 -0.7025 1.6721 38 1 2.3416 3.0599 3.3180 39 1 2.5075 3.4068 5.8831 40 1 1.5845 2.2581 6.8813 41 1 3.1500 1.7747 6.1859 42 1 1.1129 4.3130 3.7573 43 1 -1.0290 5.4934 3.4821 44 1 -6.7232 5.9918 3.6168 45 1 -3.0813 2.1441 5.1724 46 1 -0.9355 0.9677 5.4336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858587211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:06 Heat of formation + Delta-G solvation = -22.745269 kcal Electronic energy + Delta-G solvation = -27962.850544 eV Core-core repulsion = 24049.062553 eV Total energy + Delta-G solvation = -3913.787992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.33426 -39.23785 -37.79705 -37.36712 -35.47482 -33.22322 -32.67446 -32.08783 -30.31679 -28.54789 -27.98324 -27.54521 -26.56501 -25.44637 -23.38375 -22.45216 -21.83697 -20.36455 -19.95663 -18.05542 -17.87258 -17.16478 -16.93798 -16.37437 -15.80033 -15.22979 -14.92411 -14.73055 -14.57439 -14.49273 -14.10019 -13.75449 -13.65421 -13.48983 -13.21946 -12.98323 -12.83234 -12.73257 -12.57388 -12.37650 -12.12395 -12.06767 -11.78600 -11.70467 -11.57524 -11.35379 -11.14736 -10.83204 -10.76311 -10.63674 -10.54505 -10.44329 -9.86576 -9.42607 -9.27729 -8.87866 -8.43744 -8.24770 -7.23584 -6.50677 -4.09786 1.64093 2.13833 2.22604 2.35168 3.08586 3.09236 3.12538 3.65826 3.91373 4.26820 4.48507 4.76160 4.97524 5.00823 5.02461 5.03967 5.10070 5.13065 5.18232 5.23463 5.27173 5.41631 5.45628 5.48293 5.61764 5.67925 5.72166 5.75949 5.81973 6.01265 6.08137 6.09393 6.16714 6.23015 6.33278 6.39028 6.63066 6.79964 6.89864 7.02443 7.15173 7.19215 7.35421 7.39244 7.50909 7.75555 7.83708 7.93865 8.94611 9.64643 10.67150 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.003384 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.684604 B = 8272.507511 C = 9144.713880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.140 6.140 3 N -0.482 5.482 4 C 0.086 3.914 5 C 0.526 3.474 6 O -0.515 6.515 7 C 0.073 3.927 8 H 0.076 0.924 9 C -0.135 4.135 10 N -0.668 5.668 11 C 0.138 3.862 12 H 0.077 0.923 13 C -0.131 4.131 14 C -0.218 4.218 15 C -0.070 4.070 16 C -0.189 4.189 17 C 0.154 3.846 18 O -0.177 6.177 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.233 4.233 28 C -0.064 4.064 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.354 0.646 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.271 0.729 45 H 0.126 0.874 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -12.175 -5.262 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.144 6.144 3 N -0.262 5.262 4 C -0.055 4.055 5 C 0.316 3.684 6 O -0.390 6.390 7 C -0.040 4.040 8 H 0.094 0.906 9 C -0.193 4.193 10 N -0.304 5.304 11 C 0.029 3.971 12 H 0.095 0.905 13 C -0.189 4.189 14 C -0.220 4.220 15 C -0.088 4.088 16 C -0.208 4.208 17 C 0.100 3.900 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.178 0.822 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.144 0.856 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.077 -11.752 -5.257 19.077 hybrid contribution -2.169 -0.028 -0.039 2.170 sum 11.908 -11.780 -5.295 17.568 Atomic orbital electron populations 1.23462 0.81237 1.04180 1.02054 1.90611 1.20389 1.06687 1.96719 1.49943 1.59097 1.10448 1.06729 1.21901 1.01490 0.98189 0.83877 1.21031 0.77208 0.85116 0.85087 1.90732 1.43749 1.18819 1.85676 1.21393 1.00009 0.94925 0.87670 0.90626 1.21812 1.00537 0.94337 1.02583 1.60904 1.54195 1.11219 1.04040 1.20369 0.87959 0.98513 0.90271 0.90512 1.21710 0.99753 1.01371 0.96066 1.20030 0.95266 0.97028 1.09674 1.20404 0.96331 0.93951 0.98150 1.20181 0.90331 1.01284 1.09039 1.19412 0.87493 0.90541 0.92586 1.83994 1.12215 1.43822 1.67960 1.21269 0.82969 1.10653 1.32056 0.89170 1.25296 0.98219 0.96219 0.96719 1.70029 1.24846 1.18288 1.36439 0.85789 0.79527 0.78879 0.79293 1.19433 1.20215 1.19522 1.21156 0.98421 0.96440 1.09202 1.20596 0.91763 0.98258 0.97669 0.92328 0.92616 0.87225 0.91614 0.90557 0.89356 0.91843 0.91871 0.90863 0.82157 0.92642 0.92300 0.92500 0.87220 0.86595 0.91905 0.85601 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.45 101.05 1.16 1.05 16 2 O -0.14 -1.45 8.75 -11.47 -0.10 -1.55 16 3 N -0.48 -5.66 3.34 -67.08 -0.22 -5.88 16 4 C 0.09 0.80 10.82 59.85 0.65 1.45 16 5 C 0.53 7.37 7.14 -10.99 -0.08 7.29 16 6 O -0.52 -8.53 15.14 5.55 0.08 -8.44 16 7 C 0.07 0.94 2.41 -68.87 -0.17 0.78 16 8 H 0.08 1.03 6.42 -51.93 -0.33 0.70 16 9 C -0.13 -1.45 9.33 37.16 0.35 -1.10 16 10 N -0.67 -9.22 5.94 -102.17 -0.61 -9.82 16 11 C 0.14 1.88 2.68 -68.87 -0.18 1.70 16 12 H 0.08 0.97 7.39 -51.93 -0.38 0.59 16 13 C -0.13 -1.64 9.49 37.16 0.35 -1.29 16 14 C -0.22 -3.60 4.37 -104.58 -0.46 -4.06 16 15 C -0.07 -1.26 9.16 -39.61 -0.36 -1.63 16 16 C -0.19 -4.04 9.99 -39.40 -0.39 -4.43 16 17 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 18 O -0.18 -5.02 9.76 0.07 0.00 -5.01 16 19 C -0.39 -10.87 9.44 30.89 0.29 -10.58 16 20 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 23 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 27 C -0.23 -4.93 9.13 -39.40 -0.36 -5.29 16 28 C -0.06 -1.13 9.66 -39.61 -0.38 -1.51 16 29 H 0.06 0.61 7.15 -51.93 -0.37 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.62 7.78 -51.92 -0.40 0.22 16 37 H 0.07 0.74 5.93 -51.93 -0.31 0.43 16 38 H 0.35 5.44 5.05 -39.29 -0.20 5.24 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.11 1.82 6.51 -52.49 -0.34 1.48 16 43 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.13 2.67 5.72 -52.49 -0.30 2.37 16 46 H 0.11 1.57 8.03 -52.48 -0.42 1.15 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -31.64 378.88 -6.01 -37.65 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.67 Total: 9.69 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 0.05 Total: -13.21 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.07 Total: -40.01 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.02 Total: -15.01 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.64 -6.01 -37.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858587211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.906 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds