Wall clock time and date at job start Tue Mar 31 2020 16:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41606 * 113.99982 * 2 1 4 4 C 1.46500 * 119.99568 * 270.00120 * 3 2 1 5 5 C 1.34771 * 119.99914 * 89.99715 * 3 2 1 6 6 O 1.21288 * 119.99641 * 180.02562 * 5 3 2 7 7 C 1.50694 * 120.00387 * 0.27684 * 5 3 2 8 8 H 1.09000 * 109.47376 * 299.72684 * 7 5 3 9 9 C 1.53005 * 109.46758 * 59.72275 * 7 5 3 10 10 N 1.46897 * 109.47395 * 179.72177 * 7 5 3 11 11 C 1.46904 * 110.99890 * 150.50327 * 10 7 5 12 12 H 1.09000 * 109.46822 * 39.81379 * 11 10 7 13 13 C 1.52999 * 109.46914 * 159.80528 * 11 10 7 14 14 C 1.50692 * 109.47289 * 279.80636 * 11 10 7 15 15 C 1.38301 * 119.93453 * 319.72964 * 14 11 10 16 16 C 1.38097 * 120.07147 * 179.72405 * 15 14 11 17 17 C 1.38877 * 119.93045 * 0.54644 * 16 15 14 18 18 O 1.35752 * 120.07363 * 179.74947 * 17 16 15 19 19 C 1.34822 * 117.00093 * 185.78864 * 18 17 16 20 20 H 1.07996 * 120.00562 * 5.47992 * 19 18 17 21 21 C 1.38663 * 119.99657 * 185.47692 * 19 18 17 22 22 N 1.31556 * 119.99833 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47342 * 60.00491 * 23 21 19 25 25 H 1.48504 * 109.47224 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47628 * 300.00532 * 23 21 19 27 27 C 1.38886 * 119.85925 * 359.72644 * 17 16 15 28 28 C 1.38090 * 119.93199 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47286 * 300.00041 * 1 2 3 30 30 H 1.09003 * 109.47262 * 59.99823 * 1 2 3 31 31 H 1.08998 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47146 * 269.99514 * 4 3 2 33 33 H 1.09000 * 109.47576 * 30.00185 * 4 3 2 34 34 H 1.09002 * 109.47157 * 149.99755 * 4 3 2 35 35 H 1.08993 * 109.47110 * 64.92978 * 9 7 5 36 36 H 1.09009 * 109.46894 * 184.92705 * 9 7 5 37 37 H 1.09001 * 109.47148 * 304.92414 * 9 7 5 38 38 H 1.00903 * 111.00015 * 26.55210 * 10 7 5 39 39 H 1.09002 * 109.47243 * 55.01200 * 13 11 10 40 40 H 1.08997 * 109.47279 * 175.00570 * 13 11 10 41 41 H 1.09000 * 109.47821 * 295.00889 * 13 11 10 42 42 H 1.08002 * 119.96046 * 359.97438 * 15 14 11 43 43 H 1.08000 * 120.03508 * 180.26838 * 16 15 14 44 44 H 0.96997 * 119.99359 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.02796 * 179.97438 * 27 17 16 46 46 H 1.08004 * 119.96804 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9627 -1.2688 5 6 2.2790 1.9092 1.1672 6 8 2.7718 3.0175 1.1671 7 6 1.9782 1.2184 2.4722 8 1 0.9106 1.0078 2.5343 9 6 2.7621 -0.0934 2.5473 10 7 2.3714 2.0883 3.5887 11 6 1.5298 1.8444 4.7678 12 1 1.3457 0.7747 4.8677 13 6 2.2443 2.3579 6.0195 14 6 0.2174 2.5672 4.6065 15 6 0.1922 3.8391 4.0641 16 6 -1.0095 4.5018 3.9097 17 6 -2.1924 3.8942 4.3101 18 8 -3.3747 4.5451 4.1644 19 6 -4.4686 3.9505 4.6817 20 1 -4.3679 3.0444 5.2607 21 6 -5.7230 4.5024 4.4705 22 7 -5.8457 5.6059 3.7649 23 14 -7.2386 3.6783 5.1867 24 1 -7.1175 3.6185 6.6655 25 1 -8.4470 4.4596 4.8198 26 1 -7.3565 2.3011 4.6437 27 6 -2.1631 2.6191 4.8597 28 6 -0.9588 1.9596 5.0067 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.3156 1.7108 -1.5834 33 1 1.5938 1.6336 -2.0284 34 1 2.2207 3.0418 -1.1385 35 1 3.8301 0.1225 2.5735 36 1 2.4786 -0.6349 3.4499 37 1 2.5358 -0.7025 1.6721 38 1 2.3416 3.0599 3.3180 39 1 2.5075 3.4068 5.8831 40 1 1.5845 2.2581 6.8813 41 1 3.1500 1.7747 6.1859 42 1 1.1129 4.3130 3.7573 43 1 -1.0290 5.4934 3.4821 44 1 -6.7232 5.9918 3.6168 45 1 -3.0813 2.1441 5.1724 46 1 -0.9355 0.9677 5.4336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858587211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:04 Heat of formation + Delta-G solvation = -43.794634 kcal Electronic energy + Delta-G solvation = -27963.763313 eV Core-core repulsion = 24049.062553 eV Total energy + Delta-G solvation = -3914.700760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.43177 -40.82405 -39.15718 -38.47458 -36.86883 -34.37434 -34.12359 -33.48758 -31.92166 -29.81823 -29.25769 -28.34305 -27.39508 -27.37939 -24.44044 -23.92587 -23.31862 -21.47789 -21.25291 -19.80488 -19.04999 -18.72001 -18.06688 -17.31573 -16.97865 -16.55402 -16.26062 -16.08224 -16.02056 -15.57050 -15.41224 -15.28765 -15.20410 -14.60896 -14.37968 -14.22234 -14.02822 -13.94712 -13.63883 -13.57319 -13.39024 -13.22632 -12.99817 -12.88548 -12.71559 -12.62101 -12.52482 -12.33965 -12.16622 -12.04371 -11.80059 -11.61724 -11.23170 -10.88688 -10.79703 -10.20464 -9.86703 -9.56261 -8.95179 -8.49531 -6.18243 0.51474 0.61951 0.78871 1.30045 1.33819 1.44357 1.50319 2.15892 2.71719 2.78220 3.11246 3.20429 3.45560 3.86261 3.92636 4.01281 4.10119 4.13538 4.21350 4.29694 4.31173 4.38456 4.41559 4.49272 4.50290 4.61695 4.68842 4.71930 4.76254 4.84347 4.93829 5.00060 5.03138 5.08308 5.13218 5.20767 5.22977 5.37814 5.41807 5.52918 5.59666 5.66456 5.98477 6.01788 6.14546 6.23758 6.33533 6.82863 6.94768 7.75188 8.73532 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.003384 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.684604 B = 8272.507511 C = 9144.713880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.138 6.138 3 N -0.483 5.483 4 C 0.081 3.919 5 C 0.517 3.483 6 O -0.550 6.550 7 C 0.073 3.927 8 H 0.072 0.928 9 C -0.126 4.126 10 N -0.666 5.666 11 C 0.142 3.858 12 H 0.101 0.899 13 C -0.129 4.129 14 C -0.188 4.188 15 C -0.066 4.066 16 C -0.204 4.204 17 C 0.115 3.885 18 O -0.233 6.233 19 C -0.415 4.415 20 H 0.103 0.897 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.255 1.255 27 C -0.236 4.236 28 C -0.057 4.057 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.345 0.655 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.273 0.727 45 H 0.122 0.878 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.756 -15.783 -4.482 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.142 6.142 3 N -0.261 5.261 4 C -0.059 4.059 5 C 0.307 3.693 6 O -0.428 6.428 7 C -0.040 4.040 8 H 0.089 0.911 9 C -0.184 4.184 10 N -0.301 5.301 11 C 0.032 3.968 12 H 0.119 0.881 13 C -0.187 4.187 14 C -0.190 4.190 15 C -0.085 4.085 16 C -0.223 4.223 17 C 0.065 3.935 18 O -0.139 6.139 19 C -0.491 4.491 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.179 1.179 27 C -0.255 4.255 28 C -0.075 4.075 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.140 0.860 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 15.453 -15.417 -4.490 22.286 hybrid contribution -2.232 0.964 -0.344 2.456 sum 13.221 -14.453 -4.834 20.176 Atomic orbital electron populations 1.23619 0.80219 1.05909 1.01393 1.90607 1.21320 1.05541 1.96707 1.49973 1.58398 1.10885 1.06883 1.22069 1.03000 0.97403 0.83439 1.21279 0.77052 0.84878 0.86120 1.90713 1.45548 1.20219 1.86349 1.21502 1.00013 0.95543 0.86970 0.91082 1.21769 0.99825 0.93109 1.03698 1.60972 1.53897 1.10757 1.04434 1.20533 0.85986 0.99388 0.90881 0.88094 1.21703 1.00539 1.01154 0.95300 1.20551 0.96871 0.95879 1.05699 1.20619 0.95613 0.94631 0.97589 1.20343 0.91014 1.01380 1.09568 1.19891 0.86985 0.92173 0.94499 1.83957 1.13580 1.45913 1.70482 1.21791 0.83480 1.11162 1.32642 0.87957 1.26616 1.01564 0.96787 0.97003 1.70186 1.25710 1.20709 1.39309 0.84651 0.74598 0.78155 0.78849 1.18141 1.19742 1.17878 1.21287 0.99914 0.95539 1.08784 1.20996 0.90335 0.99631 0.96559 0.94106 0.92142 0.84257 0.90314 0.88302 0.90632 0.92291 0.90317 0.90190 0.83223 0.93513 0.91808 0.90587 0.85537 0.87694 0.91821 0.85980 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 11.45 113.37 1.30 1.08 16 2 O -0.14 -2.52 8.75 -38.80 -0.34 -2.86 16 3 N -0.48 -10.63 3.34 -484.52 -1.62 -12.24 16 4 C 0.08 1.40 10.82 127.77 1.38 2.79 16 5 C 0.52 13.89 7.14 87.66 0.63 14.52 16 6 O -0.55 -18.11 15.14 -3.06 -0.05 -18.16 16 7 C 0.07 1.70 2.41 44.17 0.11 1.81 16 8 H 0.07 1.74 6.42 -2.39 -0.02 1.73 16 9 C -0.13 -2.30 9.33 71.98 0.67 -1.63 16 10 N -0.67 -16.63 5.94 -477.17 -2.83 -19.46 16 11 C 0.14 3.31 2.68 44.17 0.12 3.43 16 12 H 0.10 1.99 7.39 -2.39 -0.02 1.97 16 13 C -0.13 -2.74 9.49 71.98 0.68 -2.06 16 14 C -0.19 -5.74 4.37 -19.84 -0.09 -5.82 16 15 C -0.07 -2.35 9.16 22.25 0.20 -2.15 16 16 C -0.20 -9.03 9.99 22.39 0.22 -8.81 16 17 C 0.11 5.74 6.65 22.58 0.15 5.89 16 18 O -0.23 -14.06 9.76 -22.68 -0.22 -14.28 16 19 C -0.41 -23.94 9.44 67.92 0.64 -23.30 16 20 H 0.10 5.35 5.30 -2.91 -0.02 5.34 16 21 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 22 N -0.92 -56.49 13.67 21.62 0.30 -56.20 16 23 Si 1.02 42.10 29.55 68.60 2.03 44.13 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 27 C -0.24 -9.94 9.13 22.39 0.20 -9.73 16 28 C -0.06 -1.84 9.66 22.25 0.21 -1.62 16 29 H 0.04 0.78 7.15 -2.39 -0.02 0.76 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.53 7.42 -2.39 -0.02 1.51 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.20 7.78 -2.38 -0.02 1.18 16 37 H 0.08 1.36 5.93 -2.39 -0.01 1.35 16 38 H 0.35 10.01 5.05 -89.69 -0.45 9.56 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.13 4.10 6.51 -2.91 -0.02 4.08 16 43 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.12 5.18 5.72 -2.91 -0.02 5.16 16 46 H 0.15 3.62 8.03 -2.91 -0.02 3.60 16 Total: -1.00 -73.82 378.88 4.71 -69.11 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.54 Total: 36.36 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 6.90 Total: -26.40 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -4.16 Total: -87.90 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.61 Total: -35.30 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -73.82 4.71 -69.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858587211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.314 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds