Wall clock time and date at job start Tue Mar 31 2020 15:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46824 * 2 1 4 4 O 1.42906 * 109.46735 * 179.97438 * 3 2 1 5 5 C 1.42903 * 113.99713 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46971 * 180.02562 * 5 4 3 7 7 O 1.45197 * 109.47436 * 64.99578 * 6 5 4 8 8 C 1.34636 * 117.00081 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00088 * 3.44229 * 10 8 7 12 12 C 1.50694 * 109.47335 * 261.68289 * 11 10 8 13 13 H 1.08003 * 119.99907 * 245.73633 * 12 11 10 14 14 C 1.37871 * 120.00125 * 65.73312 * 12 11 10 15 15 N 1.31517 * 120.00205 * 15.74136 * 14 12 11 16 16 Si 1.86801 * 120.00356 * 195.73754 * 14 12 11 17 17 H 1.48498 * 109.46989 * 90.00019 * 16 14 12 18 18 H 1.48499 * 109.47465 * 210.00309 * 16 14 12 19 19 H 1.48506 * 109.46941 * 330.00550 * 16 14 12 20 20 C 1.46497 * 119.99797 * 183.44322 * 10 8 7 21 21 C 1.50710 * 109.46919 * 272.08522 * 20 10 8 22 22 C 1.38671 * 120.41410 * 276.05581 * 21 20 10 23 23 C 1.38632 * 118.41680 * 179.78260 * 22 21 20 24 24 C 1.38224 * 119.16275 * 0.51804 * 23 22 21 25 25 N 1.31855 * 120.76089 * 359.71607 * 24 23 22 26 26 C 1.31888 * 121.72864 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47442 * 300.00166 * 1 2 3 28 28 H 1.09000 * 109.47229 * 60.00079 * 1 2 3 29 29 H 1.08997 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47561 * 240.00021 * 2 1 3 31 31 H 1.09000 * 109.47229 * 119.99921 * 2 1 3 32 32 H 1.09000 * 109.47549 * 60.00143 * 3 2 1 33 33 H 1.08998 * 109.47452 * 299.99534 * 3 2 1 34 34 H 1.08996 * 109.47453 * 59.99458 * 5 4 3 35 35 H 1.09005 * 109.46822 * 299.99628 * 5 4 3 36 36 H 1.09003 * 109.46656 * 304.99844 * 6 5 4 37 37 H 1.08999 * 109.46761 * 185.00039 * 6 5 4 38 38 H 1.08995 * 109.46908 * 141.67928 * 11 10 8 39 39 H 1.08997 * 109.47121 * 21.68844 * 11 10 8 40 40 H 0.96992 * 120.00291 * 175.30851 * 15 14 12 41 41 H 1.09003 * 109.47532 * 32.08262 * 20 10 8 42 42 H 1.08998 * 109.47361 * 152.08568 * 20 10 8 43 43 H 1.08001 * 120.79657 * 0.02562 * 22 21 20 44 44 H 1.08001 * 120.41447 * 180.21578 * 23 22 21 45 45 H 1.07998 * 119.62145 * 179.74922 * 24 23 22 46 46 H 1.08001 * 119.61552 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0012 6 6 5.5754 2.6272 0.0012 7 8 6.0123 2.0128 -1.2397 8 6 7.3371 1.8337 -1.3998 9 8 8.1071 2.1808 -0.5263 10 7 7.8091 1.2683 -2.5286 11 6 6.8882 0.9177 -3.6127 12 6 6.5515 -0.5489 -3.5313 13 1 6.8681 -1.2199 -4.3162 14 6 5.8395 -1.0341 -2.4550 15 7 5.1915 -0.2040 -1.6671 16 14 5.7951 -2.8705 -2.1157 17 1 6.9207 -3.2355 -1.2186 18 1 4.5082 -3.2224 -1.4636 19 1 5.9211 -3.6135 -3.3954 20 6 9.2430 1.0044 -2.6714 21 6 9.9233 2.2216 -3.2430 22 6 9.9439 2.4360 -4.6129 23 6 10.5773 3.5716 -5.0935 24 6 11.1725 4.4407 -4.1984 25 7 11.1375 4.2022 -2.9021 26 6 10.5396 3.1349 -2.4091 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7281 3.2887 0.8911 35 1 3.7289 3.2892 -0.8888 36 1 5.8910 2.0105 0.8428 37 1 6.0184 3.6191 0.0913 38 1 7.3594 1.1297 -4.5724 39 1 5.9753 1.5059 -3.5185 40 1 4.6357 -0.5491 -0.9511 41 1 9.6693 0.7749 -1.6948 42 1 9.3916 0.1571 -3.3408 43 1 9.4742 1.7370 -5.2891 44 1 10.6096 3.7722 -6.1542 45 1 11.6715 5.3255 -4.5650 46 1 10.5318 2.9729 -1.3414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858883506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:35 Heat of formation + Delta-G solvation = -100.367676 kcal Electronic energy + Delta-G solvation = -28333.172211 eV Core-core repulsion = 24416.018259 eV Total energy + Delta-G solvation = -3917.153952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34373 -40.65958 -38.92729 -37.53114 -36.45645 -34.63071 -34.43425 -33.26764 -32.47816 -30.92297 -29.24732 -27.40054 -26.63692 -24.85055 -24.27674 -23.72297 -22.96070 -22.25594 -21.08036 -18.95932 -18.22202 -17.77029 -17.75029 -17.64876 -17.04013 -16.91533 -16.79248 -16.39374 -15.94859 -15.65333 -15.45960 -14.94106 -14.66532 -14.47553 -14.23865 -14.06324 -13.88845 -13.77506 -13.52045 -13.29790 -12.98717 -12.88082 -12.82832 -12.68312 -12.60405 -12.42187 -12.08846 -11.75843 -11.71510 -11.70578 -11.56170 -11.14657 -11.04962 -10.71678 -10.44375 -10.35890 -10.31496 -9.92726 -9.20610 -7.85883 -6.07235 0.17431 0.38664 1.39053 1.46715 1.50759 1.78687 2.31200 2.50257 2.86706 2.93203 3.24189 3.57081 3.64470 3.95292 3.96789 4.06447 4.09200 4.14195 4.17299 4.24420 4.30188 4.38706 4.47163 4.53659 4.56012 4.67842 4.71237 4.77134 4.81875 4.85003 4.86707 4.91746 4.92303 5.16661 5.24204 5.28531 5.38666 5.40919 5.45974 5.79623 5.82211 5.87583 6.04619 6.29515 6.53847 6.91366 6.95392 7.06026 7.59403 7.84084 9.07451 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.004060 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.070414 B = 6895.052528 C = 8148.210148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.063 3.937 4 O -0.384 6.384 5 C 0.081 3.919 6 C 0.084 3.916 7 O -0.303 6.303 8 C 0.642 3.358 9 O -0.644 6.644 10 N -0.571 5.571 11 C 0.247 3.753 12 C -0.582 4.582 13 H 0.053 0.947 14 C 0.048 3.952 15 N -0.813 5.813 16 Si 0.917 3.083 17 H -0.292 1.292 18 H -0.289 1.289 19 H -0.270 1.270 20 C 0.181 3.819 21 C -0.156 4.156 22 C -0.065 4.065 23 C -0.166 4.166 24 C 0.085 3.915 25 N -0.515 5.515 26 C 0.103 3.897 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.171 0.829 45 H 0.185 0.815 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 6.799 -2.125 7.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.014 4.014 4 O -0.303 6.303 5 C 0.004 3.996 6 C 0.008 3.992 7 O -0.213 6.213 8 C 0.398 3.602 9 O -0.541 6.541 10 N -0.309 5.309 11 C 0.128 3.872 12 C -0.621 4.621 13 H 0.071 0.929 14 C -0.162 4.162 15 N -0.445 5.445 16 Si 0.745 3.255 17 H -0.219 1.219 18 H -0.215 1.215 19 H -0.195 1.195 20 C 0.058 3.942 21 C -0.159 4.159 22 C -0.092 4.092 23 C -0.185 4.185 24 C -0.072 4.072 25 N -0.224 5.224 26 C -0.054 4.054 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.202 0.798 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.332 7.366 -1.082 7.563 hybrid contribution -0.535 -1.675 0.148 1.764 sum -1.866 5.691 -0.934 6.062 Atomic orbital electron populations 1.21635 0.92788 1.02574 1.02625 1.21414 0.97101 0.95780 1.01692 1.22554 0.81048 0.97670 1.00104 1.88159 1.19718 1.27137 1.95286 1.22414 0.90065 0.85721 1.01360 1.22863 0.94452 0.96723 0.85121 1.86783 1.21035 1.74254 1.39273 1.18468 0.81770 0.77120 0.82846 1.90774 1.58864 1.59634 1.44857 1.47836 1.07123 1.60191 1.15751 1.19052 0.88317 0.95076 0.84715 1.21382 1.38759 0.94561 1.07381 0.92886 1.25589 0.94908 0.99213 0.96523 1.70093 1.23869 1.33775 1.16807 0.86243 0.76643 0.84549 0.78094 1.21897 1.21485 1.19470 1.19992 0.78984 0.94192 1.01056 1.21339 0.99815 0.99210 0.95528 1.21821 0.95419 0.97718 0.94212 1.22488 0.98496 0.94572 1.02970 1.23363 0.96203 0.99669 0.87990 1.67696 1.17887 1.19662 1.17144 1.22602 0.93155 0.89568 1.00047 0.91175 0.92206 0.91822 0.93786 0.92313 0.91998 0.93805 0.88959 0.92849 0.93705 0.90590 0.93803 0.95441 0.92332 0.91733 0.88127 0.83366 0.81111 0.79763 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.91 71.98 0.71 -2.18 16 2 C -0.12 -3.52 6.30 30.59 0.19 -3.33 16 3 C 0.06 1.82 5.94 71.98 0.43 2.24 16 4 O -0.38 -14.39 8.96 -145.57 -1.31 -15.70 16 5 C 0.08 2.63 6.33 71.98 0.46 3.08 16 6 C 0.08 3.34 5.85 71.98 0.42 3.76 16 7 O -0.30 -14.65 6.02 -52.80 -0.32 -14.97 16 8 C 0.64 31.97 7.92 129.79 1.03 33.00 16 9 O -0.64 -33.27 15.60 19.81 0.31 -32.96 16 10 N -0.57 -26.27 2.40 -960.92 -2.30 -28.57 16 11 C 0.25 11.60 5.50 85.63 0.47 12.07 16 12 C -0.58 -29.86 9.34 25.60 0.24 -29.62 16 13 H 0.05 2.68 7.86 -2.91 -0.02 2.66 16 14 C 0.05 2.53 5.35 84.65 0.45 2.98 16 15 N -0.81 -43.49 9.30 21.45 0.20 -43.29 16 16 Si 0.92 42.71 29.57 68.60 2.03 44.74 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.18 7.09 5.52 85.64 0.47 7.57 16 21 C -0.16 -5.37 5.47 -19.77 -0.11 -5.48 16 22 C -0.07 -1.83 9.87 22.47 0.22 -1.61 16 23 C -0.17 -3.78 10.11 22.36 0.23 -3.55 16 24 C 0.08 2.14 11.18 84.69 0.95 3.08 16 25 N -0.51 -17.06 10.36 -195.85 -2.03 -19.09 16 26 C 0.10 3.71 10.84 84.67 0.92 4.63 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 39 H 0.03 1.43 7.07 -2.39 -0.02 1.41 16 40 H 0.27 14.26 7.53 -92.71 -0.70 13.56 16 41 H 0.06 2.68 7.45 -2.39 -0.02 2.66 16 42 H 0.10 3.65 8.04 -2.39 -0.02 3.64 16 43 H 0.15 3.71 7.73 -2.91 -0.02 3.69 16 44 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.14 5.38 7.88 -2.91 -0.02 5.36 16 Total: -1.00 -67.04 385.98 4.68 -62.35 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.02 Total: 20.85 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 7.08 Total: 26.64 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -4.13 Total: -90.95 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -1.31 Total: -63.62 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -67.04 4.68 -62.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858883506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.016 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds