Wall clock time and date at job start Tue Mar 31 2020 15:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 O 1.42902 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.42900 * 113.99969 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46609 * 180.02562 * 5 4 3 7 7 O 1.45197 * 109.47153 * 65.00225 * 6 5 4 8 8 C 1.34633 * 117.00114 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99937 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00303 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47136 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46951 * 120.00311 * 16 14 12 19 19 H 1.48498 * 109.47372 * 240.00176 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09000 * 109.46885 * 300.00356 * 1 2 3 28 28 H 1.08996 * 109.47094 * 59.99733 * 1 2 3 29 29 H 1.08993 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47454 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47024 * 119.99814 * 2 1 3 32 32 H 1.09004 * 109.47255 * 59.99729 * 3 2 1 33 33 H 1.08996 * 109.47434 * 300.00059 * 3 2 1 34 34 H 1.08993 * 109.46867 * 60.00582 * 5 4 3 35 35 H 1.08998 * 109.47303 * 300.00048 * 5 4 3 36 36 H 1.08996 * 109.47068 * 305.00082 * 6 5 4 37 37 H 1.09004 * 109.46834 * 185.00322 * 6 5 4 38 38 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 39 39 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 40 40 H 0.97000 * 120.00213 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 42 42 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 43 43 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 44 44 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 45 45 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 46 46 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5755 2.6272 0.0001 7 8 6.0123 2.0118 -1.2403 8 6 7.3370 1.8325 -1.4003 9 8 8.1071 2.1812 -0.5275 10 7 7.8091 1.2672 -2.5291 11 6 6.8807 0.8473 -3.5817 12 6 6.4617 -0.5802 -3.3417 13 1 6.8485 -1.1208 -2.4906 14 6 5.5843 -1.1962 -4.2089 15 7 5.1136 -0.5381 -5.2456 16 14 5.0655 -2.9659 -3.9119 17 1 5.7316 -3.4783 -2.6876 18 1 3.5922 -3.0269 -3.7356 19 1 5.4595 -3.7994 -5.0761 20 6 9.2506 1.0726 -2.7033 21 6 9.6443 -0.2778 -2.1623 22 6 9.7269 -1.3594 -3.0190 23 6 10.0951 -2.5960 -2.5120 24 6 10.3579 -2.7011 -1.1545 25 6 10.2550 -1.5755 -0.3596 26 7 9.9063 -0.4136 -0.8772 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.7282 3.2894 0.8896 35 1 3.7289 3.2885 -0.8903 36 1 5.8911 2.0113 0.8422 37 1 6.0185 3.6192 0.0894 38 1 6.0013 1.4912 -3.5686 39 1 7.3724 0.9235 -4.5514 40 1 4.4967 -0.9715 -5.8559 41 1 9.7902 1.8514 -2.1644 42 1 9.4988 1.1257 -3.7634 43 1 9.5106 -1.2418 -4.0705 44 1 10.1715 -3.4579 -3.1583 45 1 10.6439 -3.6497 -0.7247 46 1 10.4620 -1.6481 0.6979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858944232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:33 Heat of formation + Delta-G solvation = -93.992216 kcal Electronic energy + Delta-G solvation = -28039.067180 eV Core-core repulsion = 24122.189689 eV Total energy + Delta-G solvation = -3916.877491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.95364 -39.31799 -37.91526 -36.17715 -34.84659 -33.61969 -32.66025 -31.94175 -31.24141 -29.84140 -27.56979 -26.15123 -25.67383 -23.15666 -22.93834 -22.42747 -21.71753 -21.28521 -19.74017 -17.19611 -16.84198 -16.61597 -16.45020 -16.16219 -15.86268 -15.66489 -15.33945 -14.97304 -14.63855 -14.50005 -14.16743 -13.69179 -13.35799 -13.03603 -12.94856 -12.75739 -12.46890 -12.28573 -12.21887 -11.94180 -11.81275 -11.58558 -11.32821 -11.27394 -11.05989 -10.86244 -10.77926 -10.72222 -10.68649 -10.13222 -9.92219 -9.68303 -9.60841 -9.40598 -9.36624 -8.93635 -8.56918 -8.42073 -7.76681 -6.06539 -4.09255 1.52926 1.78704 3.02727 3.26702 3.35229 3.41922 3.72260 3.81288 4.29684 4.41687 4.78202 4.83548 5.02971 5.05604 5.21002 5.22762 5.23494 5.28380 5.35228 5.40726 5.46669 5.48543 5.53970 5.57024 5.61896 5.69884 5.81382 5.86491 5.94128 5.99088 6.01711 6.17735 6.22493 6.22939 6.35117 6.56923 6.64091 6.73606 7.08265 7.16179 7.32604 7.41761 7.59266 7.88698 8.19395 8.33205 8.54119 8.92531 9.24591 9.56207 11.01351 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.004854 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.309766 B = 5767.439766 C = 7101.086026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.064 3.936 4 O -0.374 6.374 5 C 0.066 3.934 6 C 0.089 3.911 7 O -0.343 6.343 8 C 0.651 3.349 9 O -0.588 6.588 10 N -0.577 5.577 11 C 0.243 3.757 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.894 5.894 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.188 3.812 21 C 0.120 3.880 22 C -0.130 4.130 23 C -0.085 4.085 24 C -0.180 4.180 25 C 0.086 3.914 26 N -0.460 5.460 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.261 0.739 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 2.135 6.921 7.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.013 4.013 4 O -0.293 6.293 5 C -0.010 4.010 6 C 0.013 3.987 7 O -0.256 6.256 8 C 0.406 3.594 9 O -0.479 6.479 10 N -0.315 5.315 11 C 0.123 3.877 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.211 1.211 20 C 0.065 3.935 21 C -0.020 4.020 22 C -0.150 4.150 23 C -0.111 4.111 24 C -0.200 4.200 25 C -0.071 4.071 26 N -0.169 5.169 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.156 0.844 44 H 0.146 0.854 45 H 0.144 0.856 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.382 2.829 7.586 8.105 hybrid contribution -0.652 -1.802 -0.350 1.948 sum -0.269 1.027 7.236 7.313 Atomic orbital electron populations 1.21680 0.95087 1.02024 1.01665 1.21466 0.95287 0.95908 1.03810 1.22492 0.81431 0.97809 0.99556 1.88054 1.19118 1.26838 1.95274 1.22529 0.91932 0.85834 1.00749 1.22789 0.92312 0.98030 0.85569 1.86457 1.23564 1.75676 1.39914 1.18012 0.80815 0.77817 0.82788 1.90920 1.57356 1.57096 1.42532 1.46996 1.06458 1.60586 1.17439 1.19473 0.87932 0.95856 0.84399 1.21424 1.26520 0.97156 1.10362 0.92505 1.24835 0.95801 0.97894 0.95032 1.69929 1.32330 1.36779 1.14332 0.86570 0.78624 0.85075 0.78029 1.19850 1.20908 1.21062 1.20101 0.80620 0.92404 1.00419 1.21656 0.94318 0.96786 0.89198 1.22003 0.98081 0.92997 1.01965 1.21502 0.96585 0.97661 0.95341 1.22038 1.03123 0.99896 0.94942 1.22635 0.96384 0.88224 0.99869 1.67560 1.09472 1.26276 1.13577 0.92875 0.92530 0.92206 0.90506 0.91345 0.93972 0.93344 0.91625 0.92197 0.90992 0.90361 0.93697 0.94614 0.92887 0.89061 0.88777 0.84420 0.85377 0.85635 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.75 6.30 -26.73 -0.17 -1.92 16 3 C 0.06 0.89 5.94 37.16 0.22 1.11 16 4 O -0.37 -6.65 10.31 -38.80 -0.40 -7.05 16 5 C 0.07 0.98 6.33 37.16 0.24 1.22 16 6 C 0.09 1.54 5.85 37.16 0.22 1.76 16 7 O -0.34 -7.69 9.02 -43.09 -0.39 -8.08 16 8 C 0.65 15.14 8.39 54.06 0.45 15.60 16 9 O -0.59 -14.05 15.71 -19.28 -0.30 -14.36 16 10 N -0.58 -12.96 2.44 -182.24 -0.44 -13.41 16 11 C 0.24 6.02 5.21 -5.20 -0.03 5.99 16 12 C -0.52 -13.97 9.24 -34.44 -0.32 -14.29 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.19 3.60 5.76 -5.19 -0.03 3.57 16 21 C 0.12 2.34 6.36 -82.58 -0.53 1.81 16 22 C -0.13 -2.33 9.58 -39.44 -0.38 -2.71 16 23 C -0.08 -1.35 10.18 -39.28 -0.40 -1.75 16 24 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 25 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 26 N -0.46 -9.25 10.27 -9.47 -0.10 -9.34 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 39 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.72 7.42 -51.93 -0.39 1.33 16 42 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 43 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -33.89 396.08 -8.46 -42.35 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.47 Total: 2.79 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.04 Total: 9.08 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.19 Total: -47.24 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.09 Total: -29.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.89 -8.46 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858944232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.642 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds