Wall clock time and date at job start Tue Mar 31 2020 15:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 O 1.42902 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.42900 * 113.99969 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46609 * 180.02562 * 5 4 3 7 7 O 1.45197 * 109.47153 * 65.00225 * 6 5 4 8 8 C 1.34633 * 117.00114 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99937 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00303 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00037 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00030 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47136 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46951 * 120.00311 * 16 14 12 19 19 H 1.48498 * 109.47372 * 240.00176 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09000 * 109.46885 * 300.00356 * 1 2 3 28 28 H 1.08996 * 109.47094 * 59.99733 * 1 2 3 29 29 H 1.08993 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47454 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47024 * 119.99814 * 2 1 3 32 32 H 1.09004 * 109.47255 * 59.99729 * 3 2 1 33 33 H 1.08996 * 109.47434 * 300.00059 * 3 2 1 34 34 H 1.08993 * 109.46867 * 60.00582 * 5 4 3 35 35 H 1.08998 * 109.47303 * 300.00048 * 5 4 3 36 36 H 1.08996 * 109.47068 * 305.00082 * 6 5 4 37 37 H 1.09004 * 109.46834 * 185.00322 * 6 5 4 38 38 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 39 39 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 40 40 H 0.97000 * 120.00213 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 42 42 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 43 43 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 44 44 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 45 45 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 46 46 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5755 2.6272 0.0001 7 8 6.0123 2.0118 -1.2403 8 6 7.3370 1.8325 -1.4003 9 8 8.1071 2.1812 -0.5275 10 7 7.8091 1.2672 -2.5291 11 6 6.8807 0.8473 -3.5817 12 6 6.4617 -0.5802 -3.3417 13 1 6.8485 -1.1208 -2.4906 14 6 5.5843 -1.1962 -4.2089 15 7 5.1136 -0.5381 -5.2456 16 14 5.0655 -2.9659 -3.9119 17 1 5.7316 -3.4783 -2.6876 18 1 3.5922 -3.0269 -3.7356 19 1 5.4595 -3.7994 -5.0761 20 6 9.2506 1.0726 -2.7033 21 6 9.6443 -0.2778 -2.1623 22 6 9.7269 -1.3594 -3.0190 23 6 10.0951 -2.5960 -2.5120 24 6 10.3579 -2.7011 -1.1545 25 6 10.2550 -1.5755 -0.3596 26 7 9.9063 -0.4136 -0.8772 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.7282 3.2894 0.8896 35 1 3.7289 3.2885 -0.8903 36 1 5.8911 2.0113 0.8422 37 1 6.0185 3.6192 0.0894 38 1 6.0013 1.4912 -3.5686 39 1 7.3724 0.9235 -4.5514 40 1 4.4967 -0.9715 -5.8559 41 1 9.7902 1.8514 -2.1644 42 1 9.4988 1.1257 -3.7634 43 1 9.5106 -1.2418 -4.0705 44 1 10.1715 -3.4579 -3.1583 45 1 10.6439 -3.6497 -0.7247 46 1 10.4620 -1.6481 0.6979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858944232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:32 Heat of formation + Delta-G solvation = -114.514235 kcal Electronic energy + Delta-G solvation = -28039.957082 eV Core-core repulsion = 24122.189689 eV Total energy + Delta-G solvation = -3917.767392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54049 -40.79322 -39.17977 -37.79688 -36.66652 -34.70208 -34.64532 -33.30967 -32.68625 -31.15434 -29.46618 -27.66456 -26.79038 -25.03026 -24.28859 -23.88438 -23.07380 -22.36862 -21.39067 -18.98319 -18.63986 -18.14139 -17.98479 -17.54188 -17.17250 -17.02379 -16.90415 -16.52740 -16.27821 -15.87458 -15.49393 -15.13384 -14.77937 -14.48753 -14.27909 -14.12469 -14.02386 -13.82645 -13.52081 -13.44732 -13.16068 -13.01642 -12.90634 -12.76955 -12.66342 -12.50654 -12.30165 -12.07845 -11.87391 -11.80618 -11.72190 -11.50805 -11.43007 -10.70236 -10.58007 -10.57417 -10.33499 -9.89363 -9.55281 -8.17336 -6.26372 0.20037 0.48600 1.33655 1.37469 1.43565 1.49974 1.95475 2.40094 2.66326 2.91341 3.14499 3.24088 3.46973 3.87426 3.90364 4.00163 4.06230 4.08174 4.16614 4.23897 4.29623 4.32461 4.38599 4.43291 4.49014 4.55180 4.60208 4.61845 4.68619 4.80739 4.82649 4.86284 4.94051 5.11298 5.20526 5.22631 5.28075 5.31557 5.35362 5.44954 5.66933 5.79031 5.88926 6.10696 6.28651 6.48730 6.80141 7.19853 7.36999 7.50841 8.89876 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.004854 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.309766 B = 5767.439766 C = 7101.086026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.059 3.941 4 O -0.416 6.416 5 C 0.069 3.931 6 C 0.080 3.920 7 O -0.367 6.367 8 C 0.645 3.355 9 O -0.600 6.600 10 N -0.578 5.578 11 C 0.261 3.739 12 C -0.516 4.516 13 H 0.036 0.964 14 C 0.027 3.973 15 N -0.918 5.918 16 Si 0.944 3.056 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.184 3.816 21 C 0.095 3.905 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.168 4.168 25 C 0.071 3.929 26 N -0.497 5.497 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.018 0.982 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.139 0.861 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 0.964 7.688 7.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.017 4.017 4 O -0.336 6.336 5 C -0.007 4.007 6 C 0.006 3.994 7 O -0.280 6.280 8 C 0.400 3.600 9 O -0.493 6.493 10 N -0.315 5.315 11 C 0.141 3.859 12 C -0.555 4.555 13 H 0.055 0.945 14 C -0.173 4.173 15 N -0.558 5.558 16 Si 0.770 3.230 17 H -0.205 1.205 18 H -0.209 1.209 19 H -0.193 1.193 20 C 0.062 3.938 21 C -0.043 4.043 22 C -0.164 4.164 23 C -0.114 4.114 24 C -0.188 4.188 25 C -0.086 4.086 26 N -0.207 5.207 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.177 0.823 45 H 0.184 0.816 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.037 1.666 8.348 8.513 hybrid contribution -0.497 -1.442 -0.508 1.608 sum -0.534 0.224 7.840 7.862 Atomic orbital electron populations 1.21646 0.92451 1.02828 1.02838 1.21514 0.97591 0.95714 1.01950 1.22691 0.79740 0.98101 1.01128 1.87999 1.21307 1.28676 1.95632 1.22693 0.89826 0.85243 1.02971 1.23200 0.94402 0.98490 0.83357 1.86454 1.23077 1.76150 1.42340 1.18198 0.81148 0.77847 0.82853 1.90887 1.57745 1.57808 1.42845 1.47022 1.07505 1.60287 1.16732 1.19072 0.87518 0.94282 0.85058 1.21401 1.26646 0.97905 1.09586 0.94534 1.25450 0.95759 1.01234 0.94862 1.70000 1.32770 1.38163 1.14917 0.85726 0.77980 0.81259 0.78045 1.20498 1.20919 1.19280 1.20323 0.78642 0.92908 1.01957 1.21621 0.95965 0.97097 0.89612 1.22127 0.98671 0.93684 1.01948 1.21939 0.95437 0.97731 0.96335 1.22459 1.01007 1.00870 0.94439 1.23170 0.96028 0.88068 1.01372 1.67502 1.10844 1.28316 1.14072 0.90709 0.92295 0.91650 0.94033 0.91544 0.90683 0.93245 0.87088 0.91946 0.92128 0.88160 0.96371 0.94472 0.92531 0.89287 0.86437 0.84316 0.82348 0.81613 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.13 -3.56 6.30 30.60 0.19 -3.36 16 3 C 0.06 1.60 5.94 71.98 0.43 2.03 16 4 O -0.42 -14.80 10.31 -145.57 -1.50 -16.30 16 5 C 0.07 1.97 6.33 71.99 0.46 2.43 16 6 C 0.08 2.80 5.85 71.99 0.42 3.23 16 7 O -0.37 -16.97 9.02 -52.76 -0.48 -17.45 16 8 C 0.64 30.91 8.39 129.79 1.09 31.99 16 9 O -0.60 -29.41 15.71 19.79 0.31 -29.10 16 10 N -0.58 -26.71 2.44 -960.91 -2.34 -29.06 16 11 C 0.26 13.32 5.21 85.63 0.45 13.76 16 12 C -0.52 -28.46 9.24 25.60 0.24 -28.22 16 13 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 14 C 0.03 1.46 5.46 84.66 0.46 1.93 16 15 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 16 Si 0.94 44.15 29.54 68.60 2.03 46.18 16 17 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C 0.18 7.21 5.76 85.63 0.49 7.71 16 21 C 0.10 3.76 6.36 42.55 0.27 4.04 16 22 C -0.14 -5.08 9.58 22.36 0.21 -4.87 16 23 C -0.09 -2.62 10.18 22.47 0.23 -2.39 16 24 C -0.17 -4.62 10.11 22.36 0.23 -4.40 16 25 C 0.07 2.31 11.18 84.67 0.95 3.25 16 26 N -0.50 -20.11 10.27 -183.88 -1.89 -22.00 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 38 H 0.02 1.02 7.37 -2.39 -0.02 1.01 16 39 H 0.04 1.87 7.89 -2.39 -0.02 1.85 16 40 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.09 3.46 7.42 -2.39 -0.02 3.45 16 42 H 0.12 3.88 7.79 -2.39 -0.02 3.86 16 43 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -74.67 396.08 4.18 -70.49 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.95 Total: 23.92 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.82 Total: 25.07 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.95 Total: -102.82 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.67 Total: -62.84 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.67 4.18 -70.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858944232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.026 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds