Wall clock time and date at job start Tue Mar 31 2020 16:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46177 * 2 1 4 4 C 1.53040 * 109.45836 * 119.96884 * 2 1 3 5 5 C 1.53122 * 109.27429 * 179.18601 * 4 2 1 6 6 H 1.08999 * 109.52617 * 62.32166 * 5 4 2 7 7 C 1.50704 * 109.52214 * 182.44396 * 5 4 2 8 8 O 1.21285 * 120.00127 * 26.82583 * 7 5 4 9 9 N 1.34771 * 120.00015 * 206.83091 * 7 5 4 10 10 C 1.46504 * 120.00053 * 4.92395 * 9 7 5 11 11 C 1.50697 * 109.47154 * 267.63052 * 10 9 7 12 12 H 1.07996 * 120.00204 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99866 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47382 * 59.99313 * 15 13 11 17 17 H 1.48502 * 109.47096 * 179.97438 * 15 13 11 18 18 H 1.48511 * 109.46950 * 299.99188 * 15 13 11 19 19 C 1.46500 * 119.99985 * 184.64874 * 9 7 5 20 20 C 1.53001 * 109.47579 * 267.11699 * 19 9 7 21 21 F 1.39896 * 109.46756 * 55.95938 * 20 19 9 22 22 F 1.39897 * 109.47351 * 175.96114 * 20 19 9 23 23 F 1.39900 * 109.47037 * 295.96501 * 20 19 9 24 24 C 1.53117 * 109.21309 * 302.37833 * 5 4 2 25 25 C 1.53043 * 109.27187 * 57.56260 * 24 5 4 26 26 N 1.46843 * 109.57711 * 300.90879 * 25 24 5 27 27 C 1.46892 * 111.00118 * 185.80830 * 26 25 24 28 28 H 1.08998 * 109.47548 * 300.02261 * 1 2 3 29 29 H 1.08995 * 109.47028 * 60.02709 * 1 2 3 30 30 H 1.09000 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.50286 * 59.25005 * 4 2 1 32 32 H 1.08999 * 109.51116 * 299.12948 * 4 2 1 33 33 H 1.08992 * 109.46995 * 27.63254 * 10 9 7 34 34 H 1.09006 * 109.46775 * 147.62822 * 10 9 7 35 35 H 0.97003 * 119.99131 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.47334 * 27.12220 * 19 9 7 37 37 H 1.09005 * 109.47374 * 147.11770 * 19 9 7 38 38 H 1.09006 * 109.49853 * 177.56594 * 24 5 4 39 39 H 1.08998 * 109.50518 * 297.68002 * 24 5 4 40 40 H 1.09007 * 109.45999 * 180.86591 * 25 24 5 41 41 H 1.08996 * 109.41328 * 60.93119 * 25 24 5 42 42 H 1.08998 * 109.47770 * 295.79276 * 27 26 25 43 43 H 1.09002 * 109.47351 * 55.79730 * 27 26 25 44 44 H 1.09002 * 109.47344 * 175.79594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5709 -0.7362 1.2356 6 1 3.9458 0.2868 1.2683 7 6 4.0783 -1.4969 2.4335 8 8 3.3935 -2.3622 2.9370 9 7 5.2928 -1.2158 2.9454 10 6 6.0744 -0.0998 2.4067 11 6 6.9854 -0.6043 1.3174 12 1 6.9829 -1.6514 1.0531 13 6 7.8229 0.2709 0.6589 14 7 7.8264 1.5460 0.9811 15 14 8.9517 -0.3542 -0.6918 16 1 8.1377 -0.9574 -1.7775 17 1 9.7440 0.7770 -1.2378 18 1 9.8706 -1.3790 -0.1342 19 6 5.8290 -2.0223 4.0446 20 6 5.4677 -1.3689 5.3801 21 9 4.0807 -1.2030 5.4578 22 9 5.8993 -2.1856 6.4308 23 9 6.0925 -0.1207 5.4728 24 6 4.0559 -1.4182 -0.0467 25 6 3.4863 -0.6780 -1.2590 26 7 2.0191 -0.6919 -1.1993 27 6 1.4372 -0.1107 -2.4164 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 1.6657 -1.7446 1.2578 32 1 1.6895 -0.1980 2.1400 33 1 5.3997 0.6518 1.9970 34 1 6.6716 0.3436 3.2035 35 1 8.4154 2.1617 0.5175 36 1 5.4013 -3.0240 4.0026 37 1 6.9134 -2.0862 3.9531 38 1 5.1451 -1.3933 -0.0825 39 1 3.7144 -2.4532 -0.0598 40 1 3.8172 -1.1703 -2.1735 41 1 3.8403 0.3529 -1.2532 42 1 1.7119 0.9419 -2.4838 43 1 1.8161 -0.6417 -3.2897 44 1 0.3516 -0.2011 -2.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889291909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:46 Heat of formation + Delta-G solvation = -195.706296 kcal Electronic energy + Delta-G solvation = -29779.472653 eV Core-core repulsion = 25316.327768 eV Total energy + Delta-G solvation = -4463.144885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 6.23 seconds Orbital eigenvalues (eV) -49.63912 -47.19885 -47.07960 -39.95021 -38.29406 -35.31866 -33.47368 -32.71241 -32.17722 -29.60482 -27.50122 -26.89874 -26.18015 -23.62765 -23.20704 -22.41239 -21.51968 -19.60747 -18.59362 -18.09173 -17.93570 -17.26363 -16.49517 -16.14744 -15.72312 -15.35018 -15.11930 -14.57898 -14.36133 -14.14921 -14.02899 -14.00053 -13.64016 -13.57980 -13.32587 -13.27852 -13.24003 -12.71429 -12.48609 -12.40427 -12.03411 -11.96981 -11.89890 -11.80804 -11.67035 -11.41556 -11.39360 -11.09625 -10.91944 -10.84410 -10.58273 -10.26825 -10.11445 -10.01006 -9.83537 -9.09567 -8.63154 -8.12812 -8.08437 -6.28474 -4.36048 2.96232 3.16982 3.22961 3.23738 3.35272 3.55690 4.07712 4.22668 4.31631 4.48621 4.71038 4.95296 5.03298 5.05715 5.15915 5.27691 5.39916 5.50644 5.54897 5.57748 5.63210 5.73388 5.76054 5.83410 5.89874 5.94104 5.99410 6.06134 6.13747 6.26255 6.32455 6.43969 6.46648 6.72984 6.78319 7.08806 7.26369 7.28778 7.32756 7.63651 7.90906 8.04745 8.64340 8.79060 9.30891 10.78495 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.006322 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.767277 B = 4427.746981 C = 6878.887350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.093 4.093 5 C -0.098 4.098 6 H 0.097 0.903 7 C 0.528 3.472 8 O -0.556 6.556 9 N -0.596 5.596 10 C 0.232 3.768 11 C -0.540 4.540 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.081 3.919 20 C 0.431 3.569 21 F -0.180 7.180 22 F -0.191 7.191 23 F -0.180 7.180 24 C -0.106 4.106 25 C 0.061 3.939 26 N -0.539 5.539 27 C 0.022 3.978 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.267 0.733 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.022 0.978 43 H 0.064 0.936 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 -2.405 -0.927 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.132 4.132 5 C -0.119 4.119 6 H 0.115 0.885 7 C 0.317 3.683 8 O -0.435 6.435 9 N -0.327 5.327 10 C 0.113 3.887 11 C -0.579 4.579 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.046 4.046 20 C 0.375 3.625 21 F -0.161 7.161 22 F -0.173 7.173 23 F -0.162 7.162 24 C -0.144 4.144 25 C -0.067 4.067 26 N -0.265 5.265 27 C -0.126 4.126 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.532 -3.114 -0.670 9.107 hybrid contribution 1.111 0.891 -0.526 1.518 sum -7.421 -2.223 -1.196 7.839 Atomic orbital electron populations 1.21899 0.94560 1.02474 1.01379 1.21613 0.95037 0.95483 0.90494 0.94181 1.21503 0.93584 1.02166 0.95899 1.21278 0.95950 1.01195 0.93505 0.88478 1.20665 0.80389 0.83049 0.84198 1.90616 1.56788 1.34063 1.62033 1.48214 1.18276 1.33640 1.32533 1.19685 0.90984 0.83075 0.94933 1.21355 1.22136 0.95300 1.19096 0.91764 1.24915 0.96754 0.94698 0.97129 1.69913 1.38391 1.02591 1.41473 0.86613 0.80803 0.78464 0.81985 1.19893 1.21161 1.20062 1.22392 1.03322 0.96666 0.82181 1.21583 0.74879 0.77478 0.88578 1.93187 1.30592 1.95571 1.96790 1.93135 1.89789 1.72919 1.61442 1.93193 1.82345 1.43918 1.96733 1.21613 1.02989 0.98823 0.91000 1.22058 0.86138 0.99528 0.98946 1.61996 1.07889 1.54783 1.01816 1.22394 1.00348 0.97158 0.92695 0.92285 0.92688 0.91774 0.90116 0.91760 0.93709 0.93844 0.92326 0.86660 0.85957 0.87942 0.91659 0.90794 0.94355 0.95945 0.91726 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.77 37.16 0.33 -1.33 16 2 C 0.08 1.14 2.44 -67.72 -0.17 0.97 16 3 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.09 -1.48 4.26 -26.65 -0.11 -1.59 16 5 C -0.10 -1.75 2.01 -91.65 -0.18 -1.93 16 6 H 0.10 1.84 5.89 -51.93 -0.31 1.53 16 7 C 0.53 10.42 6.38 -10.99 -0.07 10.35 16 8 O -0.56 -11.84 15.12 5.55 0.08 -11.76 16 9 N -0.60 -11.76 2.36 -175.05 -0.41 -12.17 16 10 C 0.23 5.14 4.84 -5.19 -0.03 5.11 16 11 C -0.54 -12.73 7.61 -34.44 -0.26 -12.99 16 12 H 0.06 1.51 7.51 -52.49 -0.39 1.11 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 15 Si 0.89 19.28 29.54 -169.99 -5.02 14.26 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.08 1.41 5.45 -4.04 -0.02 1.39 16 20 C 0.43 7.48 3.30 37.16 0.12 7.61 16 21 F -0.18 -3.40 16.28 2.25 0.04 -3.37 16 22 F -0.19 -3.06 17.32 2.25 0.04 -3.02 16 23 F -0.18 -3.35 16.05 2.25 0.04 -3.32 16 24 C -0.11 -1.83 5.36 -26.65 -0.14 -1.98 16 25 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 26 N -0.54 -7.60 4.75 -234.93 -1.12 -8.72 16 27 C 0.02 0.26 9.05 60.06 0.54 0.80 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.55 6.32 -51.93 -0.33 0.23 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.37 7.78 -51.93 -0.40 0.97 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.04 5.81 -51.93 -0.30 0.74 16 34 H 0.04 1.03 6.98 -51.93 -0.36 0.67 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.12 1.88 7.40 -51.93 -0.38 1.50 16 37 H 0.12 1.96 8.10 -51.93 -0.42 1.54 16 38 H 0.10 1.97 5.88 -51.93 -0.31 1.67 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.07 0.70 6.21 -51.93 -0.32 0.38 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -26.53 355.77 -6.83 -33.36 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.46 Total: 2.84 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.11 Total: 8.92 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.79 Total: -43.27 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 9 Polarization: -9.82 SS G_CDS: 0.11 Total: -9.71 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.53 -6.83 -33.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889291909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.343 kcal (2) G-P(sol) polarization free energy of solvation -26.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds