Wall clock time and date at job start Tue Mar 31 2020 16:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46177 * 2 1 4 4 C 1.53040 * 109.45836 * 119.96884 * 2 1 3 5 5 C 1.53122 * 109.27429 * 179.18601 * 4 2 1 6 6 H 1.08999 * 109.52617 * 62.32166 * 5 4 2 7 7 C 1.50704 * 109.52214 * 182.44396 * 5 4 2 8 8 O 1.21285 * 120.00127 * 26.82583 * 7 5 4 9 9 N 1.34771 * 120.00015 * 206.83091 * 7 5 4 10 10 C 1.46504 * 120.00053 * 4.92395 * 9 7 5 11 11 C 1.50697 * 109.47154 * 267.63052 * 10 9 7 12 12 H 1.07996 * 120.00204 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99866 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47382 * 59.99313 * 15 13 11 17 17 H 1.48502 * 109.47096 * 179.97438 * 15 13 11 18 18 H 1.48511 * 109.46950 * 299.99188 * 15 13 11 19 19 C 1.46500 * 119.99985 * 184.64874 * 9 7 5 20 20 C 1.53001 * 109.47579 * 267.11699 * 19 9 7 21 21 F 1.39896 * 109.46756 * 55.95938 * 20 19 9 22 22 F 1.39897 * 109.47351 * 175.96114 * 20 19 9 23 23 F 1.39900 * 109.47037 * 295.96501 * 20 19 9 24 24 C 1.53117 * 109.21309 * 302.37833 * 5 4 2 25 25 C 1.53043 * 109.27187 * 57.56260 * 24 5 4 26 26 N 1.46843 * 109.57711 * 300.90879 * 25 24 5 27 27 C 1.46892 * 111.00118 * 185.80830 * 26 25 24 28 28 H 1.08998 * 109.47548 * 300.02261 * 1 2 3 29 29 H 1.08995 * 109.47028 * 60.02709 * 1 2 3 30 30 H 1.09000 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.50286 * 59.25005 * 4 2 1 32 32 H 1.08999 * 109.51116 * 299.12948 * 4 2 1 33 33 H 1.08992 * 109.46995 * 27.63254 * 10 9 7 34 34 H 1.09006 * 109.46775 * 147.62822 * 10 9 7 35 35 H 0.97003 * 119.99131 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.47334 * 27.12220 * 19 9 7 37 37 H 1.09005 * 109.47374 * 147.11770 * 19 9 7 38 38 H 1.09006 * 109.49853 * 177.56594 * 24 5 4 39 39 H 1.08998 * 109.50518 * 297.68002 * 24 5 4 40 40 H 1.09007 * 109.45999 * 180.86591 * 25 24 5 41 41 H 1.08996 * 109.41328 * 60.93119 * 25 24 5 42 42 H 1.08998 * 109.47770 * 295.79276 * 27 26 25 43 43 H 1.09002 * 109.47351 * 55.79730 * 27 26 25 44 44 H 1.09002 * 109.47344 * 175.79594 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5709 -0.7362 1.2356 6 1 3.9458 0.2868 1.2683 7 6 4.0783 -1.4969 2.4335 8 8 3.3935 -2.3622 2.9370 9 7 5.2928 -1.2158 2.9454 10 6 6.0744 -0.0998 2.4067 11 6 6.9854 -0.6043 1.3174 12 1 6.9829 -1.6514 1.0531 13 6 7.8229 0.2709 0.6589 14 7 7.8264 1.5460 0.9811 15 14 8.9517 -0.3542 -0.6918 16 1 8.1377 -0.9574 -1.7775 17 1 9.7440 0.7770 -1.2378 18 1 9.8706 -1.3790 -0.1342 19 6 5.8290 -2.0223 4.0446 20 6 5.4677 -1.3689 5.3801 21 9 4.0807 -1.2030 5.4578 22 9 5.8993 -2.1856 6.4308 23 9 6.0925 -0.1207 5.4728 24 6 4.0559 -1.4182 -0.0467 25 6 3.4863 -0.6780 -1.2590 26 7 2.0191 -0.6919 -1.1993 27 6 1.4372 -0.1107 -2.4164 28 1 -0.3634 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 1.6657 -1.7446 1.2578 32 1 1.6895 -0.1980 2.1400 33 1 5.3997 0.6518 1.9970 34 1 6.6716 0.3436 3.2035 35 1 8.4154 2.1617 0.5175 36 1 5.4013 -3.0240 4.0026 37 1 6.9134 -2.0862 3.9531 38 1 5.1451 -1.3933 -0.0825 39 1 3.7144 -2.4532 -0.0598 40 1 3.8172 -1.1703 -2.1735 41 1 3.8403 0.3529 -1.2532 42 1 1.7119 0.9419 -2.4838 43 1 1.8161 -0.6417 -3.2897 44 1 0.3516 -0.2011 -2.3791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889291909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:22 Heat of formation + Delta-G solvation = -209.916450 kcal Electronic energy + Delta-G solvation = -29780.088852 eV Core-core repulsion = 25316.327768 eV Total energy + Delta-G solvation = -4463.761083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 25.84 seconds Orbital eigenvalues (eV) -51.08222 -48.60643 -48.56910 -41.42617 -39.59518 -36.98593 -34.86999 -34.46988 -33.31633 -31.12870 -29.03462 -28.30344 -27.30161 -24.99899 -24.96638 -23.74009 -22.80807 -20.84872 -20.10193 -19.54955 -19.40008 -18.90148 -18.17070 -17.78256 -17.13849 -16.54946 -16.41264 -16.32047 -15.62499 -15.52474 -15.47469 -15.34164 -15.02303 -14.90246 -14.80183 -14.74191 -14.70035 -14.31868 -13.98363 -13.61071 -13.56856 -13.37743 -13.16324 -13.03124 -12.97037 -12.78642 -12.69934 -12.59353 -12.50990 -12.15518 -12.03055 -11.78947 -11.71018 -11.49030 -11.25252 -10.68707 -10.49102 -9.76800 -9.24172 -8.18117 -6.30412 1.43648 1.46275 1.48343 1.54016 1.81339 2.04011 2.43616 2.87298 2.98316 3.05315 3.14689 3.29124 3.56976 3.81399 3.89425 4.03207 4.14686 4.25126 4.34308 4.37732 4.48138 4.53011 4.59393 4.65663 4.72048 4.76083 4.82873 4.92554 4.95968 5.03011 5.08915 5.15232 5.22201 5.30606 5.32595 5.45364 5.53753 5.74066 6.03740 6.15839 6.22377 6.36857 6.78660 7.15028 7.40131 8.88520 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.009005 B = 0.006322 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.767277 B = 4427.746981 C = 6878.887350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.083 3.917 3 H 0.034 0.966 4 C -0.086 4.086 5 C -0.096 4.096 6 H 0.083 0.917 7 C 0.525 3.475 8 O -0.571 6.571 9 N -0.599 5.599 10 C 0.248 3.752 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.027 3.973 14 N -0.919 5.919 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.272 1.272 19 C 0.078 3.922 20 C 0.436 3.564 21 F -0.189 7.189 22 F -0.180 7.180 23 F -0.188 7.188 24 C -0.099 4.099 25 C 0.066 3.934 26 N -0.546 5.546 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.074 0.926 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -3.091 -1.981 9.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 H 0.052 0.948 4 C -0.125 4.125 5 C -0.118 4.118 6 H 0.101 0.899 7 C 0.315 3.685 8 O -0.451 6.451 9 N -0.329 5.329 10 C 0.128 3.872 11 C -0.574 4.574 12 H 0.083 0.917 13 C -0.174 4.174 14 N -0.558 5.558 15 Si 0.775 3.225 16 H -0.190 1.190 17 H -0.215 1.215 18 H -0.197 1.197 19 C -0.048 4.048 20 C 0.380 3.620 21 F -0.171 7.171 22 F -0.161 7.161 23 F -0.170 7.170 24 C -0.137 4.137 25 C -0.062 4.062 26 N -0.271 5.271 27 C -0.126 4.126 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.093 0.907 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.240 -3.817 -1.718 10.144 hybrid contribution 1.314 1.077 -0.135 1.704 sum -7.926 -2.740 -1.853 8.589 Atomic orbital electron populations 1.21856 0.92258 1.02829 1.02710 1.21623 0.96805 0.94605 0.89551 0.94839 1.21450 0.91922 1.01831 0.97247 1.21291 0.97406 0.99982 0.93074 0.89926 1.20998 0.80127 0.82896 0.84450 1.90600 1.57052 1.34839 1.62618 1.48158 1.18210 1.33380 1.33184 1.19319 0.90407 0.83428 0.94008 1.21516 1.21751 0.95192 1.18927 0.91697 1.25561 0.98071 0.94743 0.98984 1.70018 1.39411 1.03634 1.42759 0.85739 0.79164 0.77783 0.79863 1.19046 1.21497 1.19734 1.22580 1.04207 0.96712 0.81301 1.21499 0.74356 0.77222 0.88890 1.93170 1.31411 1.95626 1.96857 1.93156 1.89595 1.72474 1.60916 1.93181 1.82440 1.44581 1.96793 1.21488 1.01619 0.98904 0.91664 1.21967 0.87279 0.98541 0.98394 1.62007 1.06862 1.55331 1.02908 1.22484 1.01288 0.97152 0.91681 0.91448 0.90949 0.91843 0.91118 0.91779 0.95043 0.95542 0.92479 0.85442 0.84621 0.90106 0.91895 0.89478 0.95608 0.95871 0.90734 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.77 71.98 0.63 -2.22 16 2 C 0.08 2.19 2.44 44.94 0.11 2.30 16 3 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.09 -2.70 4.26 30.65 0.13 -2.57 16 5 C -0.10 -3.46 2.01 -11.46 -0.02 -3.49 16 6 H 0.08 3.21 5.89 -2.39 -0.01 3.20 16 7 C 0.53 20.79 6.38 87.66 0.56 21.35 16 8 O -0.57 -24.14 15.12 -3.04 -0.05 -24.19 16 9 N -0.60 -23.68 2.36 -826.13 -1.95 -25.63 16 10 C 0.25 11.15 4.84 85.63 0.41 11.56 16 11 C -0.54 -25.23 7.61 25.60 0.19 -25.04 16 12 H 0.06 3.02 7.51 -2.91 -0.02 3.00 16 13 C 0.03 1.33 5.46 84.66 0.46 1.80 16 14 N -0.92 -48.40 13.29 21.45 0.28 -48.12 16 15 Si 0.95 39.13 29.54 68.60 2.03 41.16 16 16 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 17 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 19 C 0.08 2.65 5.45 86.38 0.47 3.12 16 20 C 0.44 14.89 3.30 71.98 0.24 15.13 16 21 F -0.19 -7.08 16.28 44.97 0.73 -6.34 16 22 F -0.18 -5.54 17.32 44.97 0.78 -4.76 16 23 F -0.19 -6.98 16.05 44.97 0.72 -6.26 16 24 C -0.10 -3.39 5.36 30.65 0.16 -3.23 16 25 C 0.07 1.97 5.46 86.33 0.47 2.44 16 26 N -0.55 -14.48 4.75 -897.18 -4.26 -18.74 16 27 C 0.02 0.44 9.05 127.69 1.16 1.60 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.24 6.32 -2.39 -0.02 1.22 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.36 7.78 -2.39 -0.02 2.35 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.03 1.51 5.81 -2.39 -0.01 1.50 16 34 H 0.03 1.28 6.98 -2.38 -0.02 1.27 16 35 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.13 4.03 7.40 -2.38 -0.02 4.01 16 37 H 0.14 4.21 8.10 -2.38 -0.02 4.19 16 38 H 0.08 3.12 5.88 -2.38 -0.01 3.11 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.35 8.09 -2.38 -0.02 2.33 16 41 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.02 0.47 8.14 -2.39 -0.02 0.46 16 43 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 44 H 0.09 1.48 6.21 -2.39 -0.01 1.47 16 Total: -1.00 -55.32 355.77 4.28 -51.05 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.01 Total: 19.09 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 4.98 Total: 22.75 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -5.93 Total: -92.49 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 9 Polarization: -19.59 SS G_CDS: 2.23 Total: -17.36 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -55.32 4.28 -51.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889291909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.868 kcal (2) G-P(sol) polarization free energy of solvation -55.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.84 seconds