Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.51705 * 2 1 4 4 C 1.52792 * 109.56105 * 240.09023 * 2 1 3 5 5 N 1.47080 * 108.76088 * 186.36948 * 4 2 1 6 6 C 1.34785 * 120.87721 * 231.11911 * 5 4 2 7 7 O 1.21281 * 119.99766 * 179.72822 * 6 5 4 8 8 C 1.50694 * 120.00247 * 359.72456 * 6 5 4 9 9 C 1.52994 * 109.47419 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47419 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00360 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00177 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99960 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99944 * 179.72423 * 12 10 9 15 15 H 1.48500 * 109.47166 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46871 * 120.00431 * 14 12 10 17 17 H 1.48505 * 109.47070 * 239.99939 * 14 12 10 18 18 C 1.47073 * 118.24171 * 50.85193 * 5 4 2 19 19 C 1.53241 * 108.51945 * 309.08443 * 18 5 4 20 20 H 1.08999 * 109.49499 * 293.86958 * 19 18 5 21 21 C 1.53004 * 109.49228 * 173.81124 * 19 18 5 22 22 N 1.46893 * 109.49755 * 120.07805 * 2 1 3 23 23 C 1.46903 * 110.99882 * 307.21125 * 22 2 1 24 24 C 1.52997 * 109.46977 * 301.05601 * 23 22 2 25 25 F 1.39906 * 109.47246 * 61.98234 * 24 23 22 26 26 F 1.39904 * 109.47137 * 181.97690 * 24 23 22 27 27 F 1.39901 * 109.47328 * 301.98343 * 24 23 22 28 28 H 1.09004 * 109.46498 * 297.16625 * 1 2 3 29 29 H 1.08998 * 109.47089 * 57.16017 * 1 2 3 30 30 H 1.08993 * 109.47073 * 177.16495 * 1 2 3 31 31 H 1.08996 * 109.55514 * 66.55631 * 4 2 1 32 32 H 1.08997 * 109.45363 * 306.11983 * 4 2 1 33 33 H 1.08995 * 109.46921 * 59.99615 * 8 6 5 34 34 H 1.09004 * 109.46819 * 300.00315 * 8 6 5 35 35 H 1.09008 * 109.47235 * 59.99656 * 9 8 6 36 36 H 1.09000 * 109.46917 * 300.00020 * 9 8 6 37 37 H 0.97002 * 120.00393 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.63189 * 68.79531 * 18 5 4 39 39 H 1.09004 * 109.63152 * 189.37475 * 18 5 4 40 40 H 1.09003 * 109.46462 * 53.00809 * 21 19 18 41 41 H 1.09003 * 109.46890 * 172.99846 * 21 19 18 42 42 H 1.08993 * 109.47641 * 293.00419 * 21 19 18 43 43 H 1.08997 * 109.47156 * 61.05550 * 23 22 2 44 44 H 1.09001 * 109.47133 * 181.05613 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7179 -1.2480 5 7 3.5042 -0.8430 -1.1556 6 6 4.2976 -0.4488 -2.1713 7 8 5.5021 -0.5546 -2.0762 8 6 3.6883 0.1235 -3.4252 9 6 4.7994 0.4887 -4.4115 10 6 4.1900 1.0604 -5.6656 11 1 3.1174 1.1536 -5.7509 12 6 5.0018 1.4646 -6.7042 13 7 6.3078 1.3507 -6.6006 14 14 4.2459 2.1661 -8.2618 15 1 2.7668 2.1822 -8.1305 16 1 4.7390 3.5511 -8.4708 17 1 4.6313 1.3231 -9.4221 18 6 4.0782 -1.4042 0.0767 19 6 3.4868 -0.6538 1.2748 20 1 3.8237 0.3827 1.2572 21 6 3.9492 -1.3190 2.5727 22 7 2.0203 -0.6940 1.1982 23 6 1.4142 -0.1363 2.4146 24 6 1.7476 1.3537 2.5135 25 9 1.2025 2.0274 1.4152 26 9 1.2085 1.8748 3.6946 27 9 3.1365 1.5213 2.5210 28 1 -0.3632 0.4692 0.9144 29 1 -0.3633 0.5573 -0.8634 30 1 -0.3633 -1.0263 -0.0508 31 1 1.7787 -0.1407 -2.1344 32 1 1.5923 -1.7092 -1.3063 33 1 3.1161 1.0170 -3.1759 34 1 3.0281 -0.6160 -3.8785 35 1 5.3721 -0.4047 -4.6608 36 1 5.4592 1.2283 -3.9579 37 1 6.8789 1.6347 -7.3314 38 1 3.8284 -2.4628 0.1481 39 1 5.1612 -1.2806 0.0656 40 1 5.0360 -1.4025 2.5709 41 1 3.6326 -0.7153 3.4232 42 1 3.5085 -2.3130 2.6486 43 1 0.3326 -0.2646 2.3733 44 1 1.8086 -0.6556 3.2881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891287043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = -173.198128 kcal Electronic energy + Delta-G solvation = -29450.509866 eV Core-core repulsion = 24988.341009 eV Total energy + Delta-G solvation = -4462.168857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.54346 -48.01253 -47.97137 -40.32744 -38.42692 -34.90028 -34.12287 -33.40338 -31.16597 -30.54048 -28.15236 -27.28725 -26.23231 -25.00227 -23.28377 -21.83095 -21.34948 -20.60482 -19.01047 -18.88891 -18.62607 -17.29607 -16.97212 -16.45831 -16.18352 -15.96398 -15.39254 -15.10723 -14.78348 -14.70758 -14.42587 -14.32284 -14.20674 -14.13037 -13.84500 -13.55786 -13.42311 -13.02475 -12.89394 -12.60109 -12.49365 -12.26120 -12.13094 -12.01448 -11.86394 -11.73227 -11.34238 -11.18768 -11.03357 -10.95078 -10.90604 -10.56517 -9.96703 -9.62050 -9.17494 -9.00866 -8.96736 -8.38026 -8.30284 -5.95746 -4.00133 2.43547 3.00325 3.17278 3.32682 3.32974 3.40157 3.43323 3.47987 3.65224 3.88376 4.44805 4.47602 4.49327 4.56295 4.84954 4.92924 5.00842 5.02617 5.05822 5.25105 5.34906 5.38627 5.39362 5.48963 5.53277 5.59723 5.72229 5.77164 5.83337 5.88757 6.03557 6.18821 6.20703 6.39856 6.54265 6.68307 6.89630 7.72336 7.75007 7.86253 8.07323 8.38520 8.71822 9.08366 9.63474 11.15272 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.003210 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.775819 B = 8719.946170 C = 9242.344616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.629 5.629 6 C 0.514 3.486 7 O -0.532 6.532 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.123 3.877 19 C 0.039 3.961 20 H 0.076 0.924 21 C -0.146 4.146 22 N -0.509 5.509 23 C 0.009 3.991 24 C 0.410 3.590 25 F -0.178 7.178 26 F -0.189 7.189 27 F -0.179 7.179 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -4.968 22.523 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.365 5.365 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.000 4.000 19 C -0.069 4.069 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.232 5.232 23 C -0.122 4.122 24 C 0.353 3.647 25 F -0.159 7.159 26 F -0.170 7.170 27 F -0.160 7.160 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.309 -5.473 22.370 26.599 hybrid contribution -0.157 1.559 -0.687 1.710 sum -13.466 -3.914 21.683 25.823 Atomic orbital electron populations 1.21916 0.92878 1.02914 1.02707 1.22523 0.96506 0.97789 0.89955 0.91006 1.21718 0.80162 1.01167 0.97210 1.48373 1.06601 1.64696 1.16794 1.21612 0.87006 0.76289 0.84686 1.90659 1.14853 1.54273 1.80923 1.21883 1.02151 1.00189 0.92584 1.18910 0.92010 0.97546 0.91605 1.21247 0.93038 1.41752 1.00405 0.92560 1.25023 0.94799 0.95913 0.98631 1.70006 1.03011 1.47404 1.32387 0.86543 0.79337 0.78744 0.83384 1.19732 1.21035 1.21003 1.21593 0.99548 0.96870 0.81972 1.22632 0.85996 1.01468 0.96785 0.90647 1.21870 1.02181 1.01113 0.95203 1.62231 1.07566 1.52890 1.00480 1.23884 1.04913 0.85343 0.98025 1.22548 0.74646 0.93892 0.73600 1.93153 1.85580 1.83500 1.53698 1.93185 1.85952 1.89285 1.48600 1.93127 1.30561 1.96517 1.95814 0.92276 0.91026 0.91293 0.88392 0.90806 0.90356 0.90193 0.95798 0.95874 0.93006 0.91247 0.88534 0.91103 0.92524 0.91226 0.85666 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.28 37.16 0.31 -0.77 16 2 C 0.04 0.40 1.89 -67.82 -0.13 0.27 16 3 H 0.07 0.86 5.71 -51.93 -0.30 0.56 16 4 C 0.12 1.40 5.76 -3.83 -0.02 1.38 16 5 N -0.63 -9.44 3.02 -172.74 -0.52 -9.96 16 6 C 0.51 10.18 7.71 -10.98 -0.08 10.09 16 7 O -0.53 -12.73 15.43 5.56 0.09 -12.64 16 8 C -0.13 -2.64 4.01 -27.89 -0.11 -2.75 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 15 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.12 1.60 5.88 -3.60 -0.02 1.57 16 19 C 0.04 0.41 1.92 -67.59 -0.13 0.28 16 20 H 0.08 0.95 5.50 -51.93 -0.29 0.67 16 21 C -0.15 -1.14 8.29 37.16 0.31 -0.83 16 22 N -0.51 -4.55 4.52 -218.70 -0.99 -5.54 16 23 C 0.01 0.06 4.78 -3.82 -0.02 0.04 16 24 C 0.41 3.76 3.05 37.16 0.11 3.88 16 25 F -0.18 -1.87 12.52 2.25 0.03 -1.84 16 26 F -0.19 -1.75 17.32 2.25 0.04 -1.71 16 27 F -0.18 -1.97 13.07 2.25 0.03 -1.94 16 28 H 0.06 0.39 5.25 -51.93 -0.27 0.12 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 1.13 6.02 -51.93 -0.31 0.82 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.48 7.65 -51.93 -0.40 1.08 16 34 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 35 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.43 7.06 -51.93 -0.37 1.06 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.39 6.03 -51.93 -0.31 0.08 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.13 0.63 6.21 -51.93 -0.32 0.31 16 44 H 0.12 0.64 6.05 -51.93 -0.31 0.33 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -34.14 345.01 -6.95 -41.09 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.22 Total: -2.89 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.32 Total: 0.36 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.77 Total: -42.31 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.10 Total: -5.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.14 -6.95 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891287043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.112 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds