Wall clock time and date at job start Tue Mar 31 2020 16:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.51705 * 2 1 4 4 C 1.52792 * 109.56105 * 240.09023 * 2 1 3 5 5 N 1.47080 * 108.76088 * 186.36948 * 4 2 1 6 6 C 1.34785 * 120.87721 * 231.11911 * 5 4 2 7 7 O 1.21281 * 119.99766 * 179.72822 * 6 5 4 8 8 C 1.50694 * 120.00247 * 359.72456 * 6 5 4 9 9 C 1.52994 * 109.47419 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47419 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00360 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00177 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99960 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99944 * 179.72423 * 12 10 9 15 15 H 1.48500 * 109.47166 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46871 * 120.00431 * 14 12 10 17 17 H 1.48505 * 109.47070 * 239.99939 * 14 12 10 18 18 C 1.47073 * 118.24171 * 50.85193 * 5 4 2 19 19 C 1.53241 * 108.51945 * 309.08443 * 18 5 4 20 20 H 1.08999 * 109.49499 * 293.86958 * 19 18 5 21 21 C 1.53004 * 109.49228 * 173.81124 * 19 18 5 22 22 N 1.46893 * 109.49755 * 120.07805 * 2 1 3 23 23 C 1.46903 * 110.99882 * 307.21125 * 22 2 1 24 24 C 1.52997 * 109.46977 * 301.05601 * 23 22 2 25 25 F 1.39906 * 109.47246 * 61.98234 * 24 23 22 26 26 F 1.39904 * 109.47137 * 181.97690 * 24 23 22 27 27 F 1.39901 * 109.47328 * 301.98343 * 24 23 22 28 28 H 1.09004 * 109.46498 * 297.16625 * 1 2 3 29 29 H 1.08998 * 109.47089 * 57.16017 * 1 2 3 30 30 H 1.08993 * 109.47073 * 177.16495 * 1 2 3 31 31 H 1.08996 * 109.55514 * 66.55631 * 4 2 1 32 32 H 1.08997 * 109.45363 * 306.11983 * 4 2 1 33 33 H 1.08995 * 109.46921 * 59.99615 * 8 6 5 34 34 H 1.09004 * 109.46819 * 300.00315 * 8 6 5 35 35 H 1.09008 * 109.47235 * 59.99656 * 9 8 6 36 36 H 1.09000 * 109.46917 * 300.00020 * 9 8 6 37 37 H 0.97002 * 120.00393 * 179.97438 * 13 12 10 38 38 H 1.09000 * 109.63189 * 68.79531 * 18 5 4 39 39 H 1.09004 * 109.63152 * 189.37475 * 18 5 4 40 40 H 1.09003 * 109.46462 * 53.00809 * 21 19 18 41 41 H 1.09003 * 109.46890 * 172.99846 * 21 19 18 42 42 H 1.08993 * 109.47641 * 293.00419 * 21 19 18 43 43 H 1.08997 * 109.47156 * 61.05550 * 23 22 2 44 44 H 1.09001 * 109.47133 * 181.05613 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7179 -1.2480 5 7 3.5042 -0.8430 -1.1556 6 6 4.2976 -0.4488 -2.1713 7 8 5.5021 -0.5546 -2.0762 8 6 3.6883 0.1235 -3.4252 9 6 4.7994 0.4887 -4.4115 10 6 4.1900 1.0604 -5.6656 11 1 3.1174 1.1536 -5.7509 12 6 5.0018 1.4646 -6.7042 13 7 6.3078 1.3507 -6.6006 14 14 4.2459 2.1661 -8.2618 15 1 2.7668 2.1822 -8.1305 16 1 4.7390 3.5511 -8.4708 17 1 4.6313 1.3231 -9.4221 18 6 4.0782 -1.4042 0.0767 19 6 3.4868 -0.6538 1.2748 20 1 3.8237 0.3827 1.2572 21 6 3.9492 -1.3190 2.5727 22 7 2.0203 -0.6940 1.1982 23 6 1.4142 -0.1363 2.4146 24 6 1.7476 1.3537 2.5135 25 9 1.2025 2.0274 1.4152 26 9 1.2085 1.8748 3.6946 27 9 3.1365 1.5213 2.5210 28 1 -0.3632 0.4692 0.9144 29 1 -0.3633 0.5573 -0.8634 30 1 -0.3633 -1.0263 -0.0508 31 1 1.7787 -0.1407 -2.1344 32 1 1.5923 -1.7092 -1.3063 33 1 3.1161 1.0170 -3.1759 34 1 3.0281 -0.6160 -3.8785 35 1 5.3721 -0.4047 -4.6608 36 1 5.4592 1.2283 -3.9579 37 1 6.8789 1.6347 -7.3314 38 1 3.8284 -2.4628 0.1481 39 1 5.1612 -1.2806 0.0656 40 1 5.0360 -1.4025 2.5709 41 1 3.6326 -0.7153 3.4232 42 1 3.5085 -2.3130 2.6486 43 1 0.3326 -0.2646 2.3733 44 1 1.8086 -0.6556 3.2881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891287043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:50 Heat of formation + Delta-G solvation = -196.913648 kcal Electronic energy + Delta-G solvation = -29451.538248 eV Core-core repulsion = 24988.341009 eV Total energy + Delta-G solvation = -4463.197239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.28722 -48.79166 -48.69891 -41.45733 -39.68628 -36.08724 -35.66005 -34.81185 -33.02263 -31.50306 -28.84753 -28.53134 -27.49865 -26.43797 -24.23377 -23.32365 -22.36856 -21.55934 -20.10307 -19.74711 -19.55683 -18.87164 -18.02290 -17.65136 -17.37118 -17.03689 -16.62081 -16.45974 -16.30409 -15.80009 -15.48445 -15.11505 -15.02262 -14.98454 -14.88773 -14.66816 -14.39912 -14.22554 -13.96752 -13.85876 -13.65476 -13.25222 -13.18653 -13.14302 -12.91075 -12.85286 -12.54380 -12.49219 -12.40166 -12.16751 -11.99000 -11.97346 -11.70220 -11.58325 -11.29747 -10.70521 -10.58975 -9.93083 -9.44561 -8.18878 -6.33229 1.41818 1.43439 1.56746 1.62072 1.76235 1.94142 2.40433 2.44064 2.81677 2.98761 3.14280 3.18492 3.57174 3.69181 3.78730 3.95378 4.15790 4.16954 4.23633 4.30235 4.40829 4.44989 4.46910 4.51969 4.59633 4.74552 4.77028 4.83170 4.93348 4.98628 5.02701 5.04552 5.25939 5.35459 5.44313 5.51537 5.59420 5.71125 5.78169 5.83175 6.15813 6.34831 6.85007 7.20171 7.37252 8.94188 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.003210 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.775819 B = 8719.946170 C = 9242.344616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 H 0.049 0.951 4 C 0.112 3.888 5 N -0.618 5.618 6 C 0.510 3.490 7 O -0.588 6.588 8 C -0.115 4.115 9 C 0.043 3.957 10 C -0.542 4.542 11 H 0.077 0.923 12 C -0.007 4.007 13 N -0.938 5.938 14 Si 0.975 3.025 15 H -0.251 1.251 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.120 3.880 19 C 0.046 3.954 20 H 0.051 0.949 21 C -0.140 4.140 22 N -0.501 5.501 23 C 0.014 3.986 24 C 0.404 3.596 25 F -0.188 7.188 26 F -0.189 7.189 27 F -0.194 7.194 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.105 0.895 35 H -0.017 1.017 36 H -0.021 1.021 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.733 -5.591 23.372 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 H 0.067 0.933 4 C -0.010 4.010 5 N -0.351 5.351 6 C 0.300 3.700 7 O -0.468 6.468 8 C -0.154 4.154 9 C 0.006 3.994 10 C -0.579 4.579 11 H 0.095 0.905 12 C -0.204 4.204 13 N -0.578 5.578 14 Si 0.798 3.202 15 H -0.174 1.174 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.003 4.003 19 C -0.063 4.063 20 H 0.068 0.932 21 C -0.198 4.198 22 N -0.224 5.224 23 C -0.116 4.116 24 C 0.348 3.652 25 F -0.169 7.169 26 F -0.170 7.170 27 F -0.175 7.175 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.001 0.999 36 H -0.003 1.003 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.170 0.830 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.074 -6.107 23.269 29.500 hybrid contribution 0.987 1.746 -0.863 2.183 sum -16.088 -4.361 22.406 27.926 Atomic orbital electron populations 1.21895 0.90354 1.04093 1.03434 1.22481 0.98344 0.96208 0.89561 0.93296 1.22061 0.77605 1.02816 0.98492 1.48341 1.07995 1.62689 1.16061 1.21421 0.86508 0.76438 0.85601 1.90636 1.17158 1.56975 1.82080 1.21626 1.00087 1.01862 0.91863 1.18686 0.93066 0.94464 0.93203 1.21724 0.94112 1.41386 1.00717 0.90485 1.26151 0.95149 0.96204 1.02934 1.70188 1.05044 1.48740 1.33861 0.85261 0.79373 0.77587 0.77944 1.17433 1.20714 1.20547 1.21753 0.98329 0.98225 0.81995 1.22490 0.87150 0.99860 0.96770 0.93151 1.21846 1.02076 1.01913 0.93931 1.62224 1.06332 1.52685 1.01133 1.24127 1.06448 0.83409 0.97629 1.22990 0.73913 0.95062 0.73254 1.93137 1.85619 1.83921 1.54264 1.93183 1.85843 1.89458 1.48555 1.93110 1.31879 1.96668 1.95864 0.91213 0.90820 0.89745 0.88283 0.88507 0.88341 0.87667 0.99900 1.00278 0.92855 0.89315 0.91212 0.91540 0.91160 0.89531 0.82971 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.28 71.98 0.60 -0.97 16 2 C 0.04 0.74 1.89 44.85 0.08 0.83 16 3 H 0.05 1.12 5.71 -2.39 -0.01 1.10 16 4 C 0.11 2.36 5.76 86.20 0.50 2.86 16 5 N -0.62 -18.40 3.02 -818.81 -2.47 -20.87 16 6 C 0.51 20.95 7.71 87.65 0.68 21.63 16 7 O -0.59 -30.17 15.43 -3.03 -0.05 -30.22 16 8 C -0.11 -4.79 4.01 29.84 0.12 -4.67 16 9 C 0.04 2.48 4.26 29.84 0.13 2.61 16 10 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 11 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 12 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 13 N -0.94 -60.26 13.29 21.45 0.28 -59.98 16 14 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 15 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C 0.12 3.07 5.88 86.35 0.51 3.58 16 19 C 0.05 0.90 1.92 45.00 0.09 0.99 16 20 H 0.05 1.28 5.50 -2.39 -0.01 1.27 16 21 C -0.14 -1.89 8.29 71.98 0.60 -1.30 16 22 N -0.50 -7.58 4.52 -845.84 -3.83 -11.40 16 23 C 0.01 0.14 4.78 86.30 0.41 0.55 16 24 C 0.40 6.67 3.05 71.98 0.22 6.89 16 25 F -0.19 -3.69 12.52 44.97 0.56 -3.13 16 26 F -0.19 -3.11 17.32 44.97 0.78 -2.33 16 27 F -0.19 -4.15 13.07 44.97 0.59 -3.56 16 28 H 0.07 0.65 5.25 -2.38 -0.01 0.64 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 2.07 6.02 -2.39 -0.01 2.05 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 3.68 7.65 -2.39 -0.02 3.66 16 34 H 0.11 3.83 8.01 -2.38 -0.02 3.81 16 35 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 36 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 37 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.18 7.06 -2.39 -0.02 2.17 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.78 6.03 -2.39 -0.01 0.76 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.15 0.81 6.21 -2.39 -0.01 0.80 16 44 H 0.15 0.90 6.05 -2.39 -0.01 0.89 16 Total: -1.00 -79.40 345.01 3.54 -75.86 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.02 Total: 6.92 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 4.62 Total: 2.10 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -6.01 Total: -92.25 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 1.93 Total: -9.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.40 3.54 -75.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891287043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.052 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds