Wall clock time and date at job start Tue Mar 31 2020 16:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46977 * 2 1 4 4 C 1.50706 * 109.46896 * 240.00133 * 2 1 3 5 5 H 1.07993 * 120.00318 * 245.41348 * 4 2 1 6 6 C 1.37873 * 119.99574 * 65.41780 * 4 2 1 7 7 N 1.31518 * 119.99755 * 196.79864 * 6 4 2 8 8 Si 1.86800 * 120.00306 * 16.79532 * 6 4 2 9 9 H 1.48507 * 109.47185 * 180.02562 * 8 6 4 10 10 H 1.48491 * 109.47330 * 299.99984 * 8 6 4 11 11 H 1.48504 * 109.47009 * 60.00352 * 8 6 4 12 12 C 1.50702 * 109.47013 * 120.00513 * 2 1 3 13 13 O 1.21282 * 119.99782 * 97.13031 * 12 2 1 14 14 N 1.34770 * 119.99988 * 277.12204 * 12 2 1 15 15 C 1.47084 * 120.87857 * 5.48784 * 14 12 2 16 16 C 1.52784 * 108.76487 * 231.11418 * 15 14 12 17 17 H 1.09009 * 109.33099 * 66.34366 * 16 15 14 18 18 C 1.53001 * 109.58837 * 186.35826 * 16 15 14 19 19 N 1.46896 * 109.42741 * 306.42889 * 16 15 14 20 20 C 1.46900 * 111.00264 * 187.11100 * 19 16 15 21 21 C 1.53010 * 109.46767 * 306.05947 * 20 19 16 22 22 F 1.39901 * 109.47159 * 63.77070 * 21 20 19 23 23 F 1.39896 * 109.46741 * 183.76240 * 21 20 19 24 24 F 1.39893 * 109.47425 * 303.76549 * 21 20 19 25 25 C 1.46901 * 111.26577 * 62.96382 * 19 16 15 26 26 H 1.08993 * 109.51938 * 56.86621 * 25 19 16 27 27 C 1.53006 * 109.48987 * 176.93594 * 25 19 16 28 28 C 1.47076 * 120.88532 * 185.76462 * 14 12 2 29 29 H 1.09005 * 109.47338 * 185.11240 * 1 2 3 30 30 H 1.08998 * 109.47337 * 305.11528 * 1 2 3 31 31 H 1.08997 * 109.47587 * 65.11301 * 1 2 3 32 32 H 0.97002 * 120.00227 * 354.94040 * 7 6 4 33 33 H 1.08995 * 109.62997 * 350.88916 * 15 14 12 34 34 H 1.09005 * 109.62514 * 111.47062 * 15 14 12 35 35 H 1.08996 * 109.47010 * 186.35351 * 18 16 15 36 36 H 1.09006 * 109.46876 * 306.35077 * 18 16 15 37 37 H 1.08990 * 109.46943 * 66.34833 * 18 16 15 38 38 H 1.09004 * 109.47028 * 66.05464 * 20 19 16 39 39 H 1.08996 * 109.47579 * 186.06402 * 20 19 16 40 40 H 1.09001 * 109.47302 * 175.23722 * 27 25 19 41 41 H 1.08999 * 109.47141 * 295.24291 * 27 25 19 42 42 H 1.09003 * 109.46939 * 55.24165 * 27 25 19 43 43 H 1.09005 * 109.63090 * 248.53691 * 28 14 12 44 44 H 1.09005 * 109.62556 * 8.91049 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6366 -1.1340 6 6 1.7937 -0.1777 -2.4796 7 7 1.9262 -0.9288 -3.5511 8 14 1.2821 1.6107 -2.6502 9 1 1.0875 1.9351 -4.0863 10 1 0.0108 1.8341 -1.9162 11 1 2.3409 2.4846 -2.0839 12 6 2.0323 -0.7105 1.2304 13 8 2.3573 -1.8772 1.1667 14 7 2.1205 -0.0494 2.4015 15 6 1.6207 1.3279 2.5303 16 6 2.7188 2.1935 3.1462 17 1 3.5532 2.2681 2.4488 18 6 2.1683 3.5915 3.4352 19 7 3.1799 1.5798 4.3986 20 6 4.1143 2.4654 5.1061 21 6 5.2539 2.8609 4.1648 22 9 4.7398 3.6031 3.0961 23 9 6.1881 3.6339 4.8626 24 9 5.8758 1.7075 3.6750 25 6 3.7843 0.2631 4.1557 26 1 4.6040 0.3642 3.4446 27 6 4.3178 -0.3045 5.4727 28 6 2.7244 -0.6839 3.5830 29 1 -0.3634 -1.0236 0.0916 30 1 -0.3634 0.5911 0.8406 31 1 -0.3634 0.4324 -0.9322 32 1 2.2622 -1.8352 -3.4695 33 1 1.3591 1.7161 1.5460 34 1 0.7433 1.3400 3.1769 35 1 2.9790 4.2395 3.7683 36 1 1.7245 4.0019 2.5281 37 1 1.4092 3.5291 4.2149 38 1 3.5874 3.3612 5.4351 39 1 4.5228 1.9452 5.9724 40 1 4.6897 -1.3158 5.3083 41 1 5.1286 0.3259 5.8380 42 1 3.5153 -0.3278 6.2099 43 1 1.9550 -0.8689 4.3327 44 1 3.1890 -1.6269 3.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891288103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:56 Heat of formation + Delta-G solvation = -163.936601 kcal Electronic energy + Delta-G solvation = -30397.077064 eV Core-core repulsion = 25935.309817 eV Total energy + Delta-G solvation = -4461.767247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.45939 -47.92984 -47.87822 -40.19529 -38.26100 -34.69351 -34.18868 -33.52195 -31.21852 -30.42875 -28.01995 -26.93519 -25.80152 -24.83928 -23.38394 -22.05072 -21.40281 -20.43773 -18.88986 -18.75615 -18.56411 -17.40199 -17.18962 -16.41165 -16.30016 -16.01060 -15.39981 -14.83252 -14.60575 -14.56380 -14.26002 -14.18636 -14.05293 -13.92978 -13.60204 -13.45082 -13.12653 -12.95591 -12.82803 -12.63498 -12.42436 -12.34903 -11.90785 -11.84729 -11.76338 -11.65388 -11.47678 -11.12443 -11.04625 -10.92789 -10.82066 -10.51919 -10.15351 -9.79454 -8.90687 -8.87318 -8.70092 -8.21250 -8.15166 -6.46081 -4.04128 2.53089 3.14313 3.31434 3.37675 3.45062 3.54759 3.56533 3.60004 3.74782 3.98637 4.46778 4.58605 4.59674 4.68287 4.95379 5.04557 5.11072 5.14480 5.18615 5.26096 5.40644 5.48120 5.51224 5.60520 5.66361 5.74284 5.85398 5.87203 5.96713 6.01953 6.15403 6.21247 6.41628 6.52413 6.54990 6.65843 6.79963 6.97126 7.24099 7.75775 8.14416 8.46150 9.00615 9.05444 9.64541 10.95864 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.004689 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.331028 B = 5970.412659 C = 6577.275211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 H 0.037 0.963 4 C -0.587 4.587 5 H 0.071 0.929 6 C 0.030 3.970 7 N -0.904 5.904 8 Si 1.041 2.959 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.283 1.283 12 C 0.533 3.467 13 O -0.536 6.536 14 N -0.631 5.631 15 C 0.121 3.879 16 C 0.042 3.958 17 H 0.069 0.931 18 C -0.152 4.152 19 N -0.508 5.508 20 C 0.010 3.990 21 C 0.410 3.590 22 F -0.176 7.176 23 F -0.189 7.189 24 F -0.179 7.179 25 C 0.040 3.960 26 H 0.075 0.925 27 C -0.145 4.145 28 C 0.125 3.875 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.754 11.236 21.507 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 H 0.055 0.945 4 C -0.626 4.626 5 H 0.089 0.911 6 C -0.175 4.175 7 N -0.538 5.538 8 Si 0.869 3.131 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.209 1.209 12 C 0.324 3.676 13 O -0.411 6.411 14 N -0.367 5.367 15 C -0.003 4.003 16 C -0.066 4.066 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.231 5.231 20 C -0.121 4.121 21 C 0.353 3.647 22 F -0.157 7.157 23 F -0.171 7.171 24 F -0.161 7.161 25 C -0.068 4.068 26 H 0.093 0.907 27 C -0.203 4.203 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.042 11.606 20.568 23.705 hybrid contribution 1.511 -0.872 0.513 1.818 sum 3.553 10.734 21.081 23.922 Atomic orbital electron populations 1.22194 0.96675 1.00983 1.00416 1.19183 0.93837 0.96442 0.92169 0.94499 1.21907 1.40341 1.10590 0.89725 0.91119 1.25751 0.94940 1.04843 0.91996 1.70826 1.41339 1.10354 1.31278 0.84122 0.76988 0.75513 0.76439 1.20908 1.19841 1.20924 1.21512 0.75691 0.87012 0.83378 1.90550 1.48750 1.17127 1.84670 1.48431 1.62506 1.14904 1.10875 1.21746 0.95298 0.81303 1.01951 1.22505 0.99183 0.94899 0.90010 0.91328 1.22032 1.01672 0.94235 1.03009 1.62261 1.34960 1.02315 1.23551 1.23880 0.89897 1.01533 0.96808 1.22514 0.85196 0.74948 0.82046 1.93152 1.85907 1.77739 1.58941 1.93176 1.68839 1.76380 1.78699 1.93132 1.84678 1.49126 1.89137 1.22589 0.97313 0.88476 0.98450 0.90727 1.21872 1.00866 1.01358 0.96214 1.21526 0.94938 0.96001 0.87389 0.93127 0.95374 0.91598 0.92030 0.88308 0.91044 0.91747 0.91074 0.91405 0.85846 0.85804 0.91184 0.92564 0.91255 0.91553 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.66 37.16 0.32 -2.77 16 2 C 0.01 0.13 1.36 -92.92 -0.13 0.00 16 3 H 0.04 0.83 5.29 -51.93 -0.27 0.56 16 4 C -0.59 -17.11 8.64 -34.44 -0.30 -17.40 16 5 H 0.07 2.34 7.19 -52.49 -0.38 1.96 16 6 C 0.03 0.86 5.31 -17.82 -0.09 0.77 16 7 N -0.90 -28.16 13.70 55.43 0.76 -27.40 16 8 Si 1.04 24.43 26.29 -169.99 -4.47 19.97 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -5.68 5.67 56.52 0.32 -5.36 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.53 12.17 6.82 -10.99 -0.07 12.10 16 13 O -0.54 -14.26 15.22 5.56 0.08 -14.17 16 14 N -0.63 -11.10 3.02 -172.74 -0.52 -11.62 16 15 C 0.12 1.71 5.16 -3.83 -0.02 1.69 16 16 C 0.04 0.51 1.89 -67.83 -0.13 0.38 16 17 H 0.07 0.99 5.88 -51.92 -0.31 0.69 16 18 C -0.15 -1.39 7.98 37.16 0.30 -1.09 16 19 N -0.51 -5.34 4.52 -218.70 -0.99 -6.33 16 20 C 0.01 0.08 4.86 -3.82 -0.02 0.06 16 21 C 0.41 4.31 2.92 37.16 0.11 4.41 16 22 F -0.18 -2.09 11.83 2.25 0.03 -2.06 16 23 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 24 F -0.18 -2.27 13.98 2.25 0.03 -2.24 16 25 C 0.04 0.48 1.97 -67.59 -0.13 0.35 16 26 H 0.08 1.07 5.49 -51.93 -0.29 0.79 16 27 C -0.15 -1.29 8.56 37.16 0.32 -0.97 16 28 C 0.12 1.85 5.87 -3.61 -0.02 1.83 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.48 7.10 -51.93 -0.37 0.11 16 31 H 0.07 1.44 4.75 -51.93 -0.25 1.19 16 32 H 0.27 8.49 8.73 -40.82 -0.36 8.14 16 33 H 0.10 1.48 5.07 -51.93 -0.26 1.21 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.54 5.10 -51.93 -0.26 0.28 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.75 6.73 -51.93 -0.35 0.41 16 39 H 0.12 0.78 5.72 -51.93 -0.30 0.49 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.43 6.39 -51.93 -0.33 0.10 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.56 7.10 -51.93 -0.37 1.19 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -33.77 333.30 -5.81 -39.58 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.93 Total: 1.82 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.13 Total: -0.65 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.75 Total: -45.35 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.10 Total: -6.21 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.47 Total: 19.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.77 -5.81 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.358 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds