Wall clock time and date at job start Tue Mar 31 2020 16:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46977 * 2 1 4 4 C 1.50706 * 109.46896 * 240.00133 * 2 1 3 5 5 H 1.07993 * 120.00318 * 245.41348 * 4 2 1 6 6 C 1.37873 * 119.99574 * 65.41780 * 4 2 1 7 7 N 1.31518 * 119.99755 * 196.79864 * 6 4 2 8 8 Si 1.86800 * 120.00306 * 16.79532 * 6 4 2 9 9 H 1.48507 * 109.47185 * 180.02562 * 8 6 4 10 10 H 1.48491 * 109.47330 * 299.99984 * 8 6 4 11 11 H 1.48504 * 109.47009 * 60.00352 * 8 6 4 12 12 C 1.50702 * 109.47013 * 120.00513 * 2 1 3 13 13 O 1.21282 * 119.99782 * 97.13031 * 12 2 1 14 14 N 1.34770 * 119.99988 * 277.12204 * 12 2 1 15 15 C 1.47084 * 120.87857 * 5.48784 * 14 12 2 16 16 C 1.52784 * 108.76487 * 231.11418 * 15 14 12 17 17 H 1.09009 * 109.33099 * 66.34366 * 16 15 14 18 18 C 1.53001 * 109.58837 * 186.35826 * 16 15 14 19 19 N 1.46896 * 109.42741 * 306.42889 * 16 15 14 20 20 C 1.46900 * 111.00264 * 187.11100 * 19 16 15 21 21 C 1.53010 * 109.46767 * 306.05947 * 20 19 16 22 22 F 1.39901 * 109.47159 * 63.77070 * 21 20 19 23 23 F 1.39896 * 109.46741 * 183.76240 * 21 20 19 24 24 F 1.39893 * 109.47425 * 303.76549 * 21 20 19 25 25 C 1.46901 * 111.26577 * 62.96382 * 19 16 15 26 26 H 1.08993 * 109.51938 * 56.86621 * 25 19 16 27 27 C 1.53006 * 109.48987 * 176.93594 * 25 19 16 28 28 C 1.47076 * 120.88532 * 185.76462 * 14 12 2 29 29 H 1.09005 * 109.47338 * 185.11240 * 1 2 3 30 30 H 1.08998 * 109.47337 * 305.11528 * 1 2 3 31 31 H 1.08997 * 109.47587 * 65.11301 * 1 2 3 32 32 H 0.97002 * 120.00227 * 354.94040 * 7 6 4 33 33 H 1.08995 * 109.62997 * 350.88916 * 15 14 12 34 34 H 1.09005 * 109.62514 * 111.47062 * 15 14 12 35 35 H 1.08996 * 109.47010 * 186.35351 * 18 16 15 36 36 H 1.09006 * 109.46876 * 306.35077 * 18 16 15 37 37 H 1.08990 * 109.46943 * 66.34833 * 18 16 15 38 38 H 1.09004 * 109.47028 * 66.05464 * 20 19 16 39 39 H 1.08996 * 109.47579 * 186.06402 * 20 19 16 40 40 H 1.09001 * 109.47302 * 175.23722 * 27 25 19 41 41 H 1.08999 * 109.47141 * 295.24291 * 27 25 19 42 42 H 1.09003 * 109.46939 * 55.24165 * 27 25 19 43 43 H 1.09005 * 109.63090 * 248.53691 * 28 14 12 44 44 H 1.09005 * 109.62556 * 8.91049 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6366 -1.1340 6 6 1.7937 -0.1777 -2.4796 7 7 1.9262 -0.9288 -3.5511 8 14 1.2821 1.6107 -2.6502 9 1 1.0875 1.9351 -4.0863 10 1 0.0108 1.8341 -1.9162 11 1 2.3409 2.4846 -2.0839 12 6 2.0323 -0.7105 1.2304 13 8 2.3573 -1.8772 1.1667 14 7 2.1205 -0.0494 2.4015 15 6 1.6207 1.3279 2.5303 16 6 2.7188 2.1935 3.1462 17 1 3.5532 2.2681 2.4488 18 6 2.1683 3.5915 3.4352 19 7 3.1799 1.5798 4.3986 20 6 4.1143 2.4654 5.1061 21 6 5.2539 2.8609 4.1648 22 9 4.7398 3.6031 3.0961 23 9 6.1881 3.6339 4.8626 24 9 5.8758 1.7075 3.6750 25 6 3.7843 0.2631 4.1557 26 1 4.6040 0.3642 3.4446 27 6 4.3178 -0.3045 5.4727 28 6 2.7244 -0.6839 3.5830 29 1 -0.3634 -1.0236 0.0916 30 1 -0.3634 0.5911 0.8406 31 1 -0.3634 0.4324 -0.9322 32 1 2.2622 -1.8352 -3.4695 33 1 1.3591 1.7161 1.5460 34 1 0.7433 1.3400 3.1769 35 1 2.9790 4.2395 3.7683 36 1 1.7245 4.0019 2.5281 37 1 1.4092 3.5291 4.2149 38 1 3.5874 3.3612 5.4351 39 1 4.5228 1.9452 5.9724 40 1 4.6897 -1.3158 5.3083 41 1 5.1286 0.3259 5.8380 42 1 3.5153 -0.3278 6.2099 43 1 1.9550 -0.8689 4.3327 44 1 3.1890 -1.6269 3.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891288103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:55 Heat of formation + Delta-G solvation = -189.308166 kcal Electronic energy + Delta-G solvation = -30398.177258 eV Core-core repulsion = 25935.309817 eV Total energy + Delta-G solvation = -4462.867441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.29810 -48.80124 -48.70339 -41.48142 -39.66784 -36.11917 -35.87875 -34.76766 -33.17210 -31.43648 -28.77174 -28.00488 -27.04632 -26.81279 -24.52776 -23.46161 -22.39118 -21.48176 -20.23714 -19.72832 -19.61439 -19.38948 -18.27789 -17.84461 -17.39886 -17.01932 -16.44850 -16.16422 -15.99948 -15.55311 -15.47449 -15.15515 -15.12487 -14.93893 -14.82108 -14.65325 -14.56125 -14.24118 -14.05860 -13.67711 -13.64857 -13.39930 -13.23118 -13.11955 -12.96718 -12.78916 -12.53886 -12.44219 -12.40059 -12.11243 -12.03028 -11.94111 -11.72593 -11.58874 -11.05485 -10.57248 -10.36702 -9.91392 -9.44170 -8.82055 -6.41210 1.44247 1.55237 1.71141 1.75764 1.77282 2.00890 2.42475 2.50522 2.81847 2.98985 3.04234 3.19142 3.60718 3.69111 3.80842 3.98816 4.13956 4.17746 4.22876 4.29520 4.37017 4.45113 4.51902 4.56836 4.65049 4.73143 4.76178 4.80937 4.83499 4.94379 5.00196 5.02812 5.05666 5.25136 5.36488 5.47756 5.51052 5.69702 5.76236 5.84949 5.99545 6.46226 6.54189 7.31240 7.40873 8.58524 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.004689 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.331028 B = 5970.412659 C = 6577.275211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.600 4.600 5 H 0.007 0.993 6 C -0.023 4.023 7 N -0.935 5.935 8 Si 1.083 2.917 9 H -0.289 1.289 10 H -0.220 1.220 11 H -0.259 1.259 12 C 0.525 3.475 13 O -0.593 6.593 14 N -0.622 5.622 15 C 0.110 3.890 16 C 0.044 3.956 17 H 0.041 0.959 18 C -0.145 4.145 19 N -0.498 5.498 20 C 0.015 3.985 21 C 0.403 3.597 22 F -0.186 7.186 23 F -0.188 7.188 24 F -0.197 7.197 25 C 0.046 3.954 26 H 0.047 0.953 27 C -0.139 4.139 28 C 0.121 3.879 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 15.184 24.959 29.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.079 0.921 4 C -0.638 4.638 5 H 0.026 0.974 6 C -0.220 4.220 7 N -0.571 5.571 8 Si 0.901 3.099 9 H -0.215 1.215 10 H -0.144 1.144 11 H -0.184 1.184 12 C 0.316 3.684 13 O -0.473 6.473 14 N -0.355 5.355 15 C -0.012 4.012 16 C -0.065 4.065 17 H 0.059 0.941 18 C -0.203 4.203 19 N -0.221 5.221 20 C -0.115 4.115 21 C 0.347 3.653 22 F -0.167 7.167 23 F -0.170 7.170 24 F -0.179 7.179 25 C -0.063 4.063 26 H 0.064 0.936 27 C -0.196 4.196 28 C -0.002 4.002 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.172 0.828 39 H 0.165 0.835 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.478 15.583 24.102 28.705 hybrid contribution 2.103 -2.166 -0.495 3.059 sum 2.581 13.417 23.607 27.276 Atomic orbital electron populations 1.22065 0.94187 1.00750 1.02471 1.19128 0.95687 0.96682 0.90399 0.92118 1.22005 1.39944 1.08811 0.93000 0.97449 1.27567 0.94091 1.09150 0.91185 1.70989 1.43871 1.09645 1.32600 0.83706 0.79756 0.69393 0.77074 1.21527 1.14365 1.18369 1.21366 0.75693 0.86438 0.84899 1.90525 1.51536 1.19492 1.85775 1.48382 1.61059 1.16160 1.09901 1.22107 0.97162 0.79189 1.02729 1.22458 0.97630 0.96292 0.90090 0.94144 1.22014 1.02395 0.91918 1.03949 1.62251 1.35338 1.01854 1.22612 1.24144 0.88763 1.02509 0.96113 1.22973 0.85805 0.74388 0.82122 1.93134 1.85978 1.77926 1.59672 1.93178 1.68979 1.76295 1.78499 1.93113 1.85137 1.50141 1.89479 1.22450 0.95283 0.89151 0.99388 0.93563 1.21848 1.01897 1.01252 0.94653 1.21710 0.96185 0.95639 0.86629 0.95212 0.90365 0.91675 0.94465 0.88777 0.88074 0.90864 0.90732 0.89354 0.82791 0.83457 0.91646 0.90851 0.89378 0.89243 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.66 71.98 0.62 -4.95 16 2 C 0.00 0.13 1.36 -12.28 -0.02 0.12 16 3 H 0.06 2.62 5.29 -2.39 -0.01 2.60 16 4 C -0.60 -36.66 8.64 25.60 0.22 -36.44 16 5 H 0.01 0.51 7.19 -2.91 -0.02 0.49 16 6 C -0.02 -1.39 5.31 84.65 0.45 -0.94 16 7 N -0.94 -61.18 13.70 21.45 0.29 -60.88 16 8 Si 1.08 47.76 26.29 68.60 1.80 49.56 16 9 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.22 -7.93 5.67 99.48 0.56 -7.36 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 12 C 0.53 24.58 6.82 87.66 0.60 25.18 16 13 O -0.59 -33.71 15.22 -3.03 -0.05 -33.76 16 14 N -0.62 -21.30 3.02 -818.81 -2.47 -23.76 16 15 C 0.11 2.75 5.16 86.20 0.44 3.19 16 16 C 0.04 0.91 1.89 44.84 0.08 1.00 16 17 H 0.04 1.10 5.88 -2.38 -0.01 1.08 16 18 C -0.15 -1.96 7.98 71.98 0.57 -1.38 16 19 N -0.50 -8.67 4.52 -845.83 -3.83 -12.50 16 20 C 0.01 0.17 4.86 86.31 0.42 0.59 16 21 C 0.40 7.49 2.92 71.99 0.21 7.70 16 22 F -0.19 -4.00 11.83 44.97 0.53 -3.47 16 23 F -0.19 -3.39 17.32 44.97 0.78 -2.61 16 24 F -0.20 -4.83 13.98 44.97 0.63 -4.20 16 25 C 0.05 1.03 1.97 45.00 0.09 1.12 16 26 H 0.05 1.33 5.49 -2.39 -0.01 1.32 16 27 C -0.14 -2.09 8.56 71.98 0.62 -1.47 16 28 C 0.12 3.50 5.87 86.35 0.51 4.00 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 2.39 7.10 -2.39 -0.02 2.37 16 31 H 0.06 2.64 4.75 -2.39 -0.01 2.63 16 32 H 0.25 16.78 8.73 -92.71 -0.81 15.97 16 33 H 0.09 2.44 5.07 -2.39 -0.01 2.43 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.07 0.89 5.10 -2.39 -0.01 0.88 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.15 0.99 6.73 -2.38 -0.02 0.98 16 39 H 0.15 1.12 5.72 -2.39 -0.01 1.11 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 0.87 6.39 -2.39 -0.02 0.86 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 44 H 0.06 2.24 7.10 -2.38 -0.02 2.22 16 Total: -1.00 -82.43 333.30 3.37 -79.05 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.86 Total: 14.85 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.82 Total: -2.29 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -6.00 Total: -97.14 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.05 Total: -33.76 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 1.94 Total: -10.27 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.80 Total: 49.56 kcal Total: -82.43 3.37 -79.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891288103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.254 kcal (2) G-P(sol) polarization free energy of solvation -82.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds