Wall clock time and date at job start Tue Mar 31 2020 16:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99732 * 2 1 4 4 C 1.38746 * 120.05818 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94666 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05633 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10710 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.06058 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02765 * 179.74501 * 8 7 6 10 10 H 1.09008 * 109.46918 * 149.15056 * 9 8 7 11 11 C 1.53000 * 109.47388 * 269.15130 * 9 8 7 12 12 N 1.46899 * 109.47470 * 29.15513 * 9 8 7 13 13 C 1.46904 * 111.00089 * 189.99528 * 12 9 8 14 14 C 1.50702 * 109.46960 * 170.41132 * 13 12 9 15 15 O 1.21286 * 119.99855 * 3.25808 * 14 13 12 16 16 N 1.34774 * 119.99962 * 183.25343 * 14 13 12 17 17 C 1.46501 * 119.99944 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46907 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99634 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99349 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47005 * 89.99683 * 22 20 18 24 24 H 1.48504 * 109.46828 * 209.99596 * 22 20 18 25 25 H 1.48491 * 109.47074 * 329.99664 * 22 20 18 26 26 O 1.46296 * 111.00134 * 66.03966 * 12 9 8 27 27 C 1.42902 * 114.00224 * 247.27193 * 26 12 9 28 28 H 1.09005 * 109.47249 * 60.00620 * 1 2 3 29 29 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47394 * 299.99906 * 1 2 3 31 31 H 1.08002 * 120.03013 * 0.04530 * 4 3 2 32 32 H 1.08004 * 119.97313 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.94493 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.96608 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.46653 * 300.00352 * 11 9 8 36 36 H 1.09002 * 109.46731 * 60.00216 * 11 9 8 37 37 H 1.08995 * 109.47338 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.47018 * 290.40812 * 13 12 9 39 39 H 1.08999 * 109.46666 * 50.41452 * 13 12 9 40 40 H 0.97005 * 119.99590 * 0.02562 * 16 14 13 41 41 H 1.08990 * 109.47602 * 300.00382 * 17 16 14 42 42 H 1.09004 * 109.46675 * 60.00539 * 17 16 14 43 43 H 0.97005 * 119.99275 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.46753 * 307.48315 * 27 26 12 45 45 H 1.08994 * 109.47297 * 67.48135 * 27 26 12 46 46 H 1.09001 * 109.47538 * 187.48399 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 -0.0047 10 1 3.7149 -0.7647 0.5232 11 6 4.5086 -0.4145 -1.4487 12 7 5.5371 0.2711 0.6654 13 6 6.4582 -0.8572 0.4745 14 6 7.8302 -0.4744 0.9666 15 8 8.0086 0.6077 1.4845 16 7 8.8589 -1.3345 0.8312 17 6 10.1928 -0.9622 1.3090 18 6 11.1554 -2.0903 1.0411 19 1 10.8084 -2.9940 0.5624 20 6 12.4791 -1.9686 1.4072 21 7 13.3192 -2.9530 1.1728 22 14 13.0792 -0.4057 2.2358 23 1 12.9423 -0.5423 3.7082 24 1 14.5055 -0.1785 1.8902 25 1 12.2669 0.7459 1.7679 26 8 5.3402 0.5525 2.0874 27 6 5.6607 1.8930 2.4646 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3203 -0.0002 32 1 1.3339 4.5114 -0.0011 33 1 3.7921 4.6382 -0.0005 34 1 5.1343 2.5753 0.0000 35 1 3.5562 -0.5992 -1.9458 36 1 5.0474 0.3724 -1.9765 37 1 5.1032 -1.3280 -1.4525 38 1 6.0982 -1.7191 1.0363 39 1 6.5093 -1.1093 -0.5847 40 1 8.7162 -2.1999 0.4167 41 1 10.5286 -0.0660 0.7875 42 1 10.1531 -0.7657 2.3805 43 1 14.2506 -2.8672 1.4300 44 1 6.6656 2.1371 2.1197 45 1 4.9447 2.5789 2.0120 46 1 5.6166 1.9857 3.5498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932550948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:12 Heat of formation + Delta-G solvation = -29.779210 kcal Electronic energy + Delta-G solvation = -27762.015085 eV Core-core repulsion = 23847.922078 eV Total energy + Delta-G solvation = -3914.093006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.56499 -39.03822 -37.87889 -36.81502 -34.81620 -34.18511 -32.36300 -31.81239 -30.33141 -29.22502 -28.20055 -27.53638 -26.53560 -25.16194 -23.41062 -22.25121 -21.78937 -20.33497 -19.72712 -18.31638 -17.51665 -16.96915 -16.50535 -16.23905 -15.94231 -15.58054 -15.54952 -14.86749 -14.62010 -14.60525 -14.49243 -14.07729 -13.76340 -13.70049 -13.41279 -12.99404 -12.91388 -12.75193 -12.59240 -12.37029 -12.23048 -12.00074 -11.88043 -11.69562 -11.45324 -11.33397 -11.26887 -10.99743 -10.73706 -10.66626 -9.95285 -9.69824 -9.47175 -9.07329 -8.88790 -8.75481 -8.56035 -8.32846 -8.08307 -6.19693 -4.21556 1.16987 1.28557 2.64439 3.03461 3.27764 3.33949 3.35087 3.43688 3.59432 3.94243 4.35183 4.40221 4.61272 4.76505 4.82573 4.90515 4.92538 5.07746 5.10323 5.15585 5.15935 5.22949 5.26498 5.39088 5.43462 5.52357 5.60168 5.63253 5.76618 5.82607 5.87764 5.95412 6.04363 6.15919 6.25333 6.32653 6.38604 6.62817 6.73270 6.87939 7.11206 7.14760 7.20792 7.30266 7.43665 8.17784 8.56057 8.78402 9.02662 9.40975 10.92328 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.002696 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.073724 B =10383.076854 C =11005.821395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.132 3.868 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.162 4.162 7 C -0.055 4.055 8 C -0.101 4.101 9 C 0.116 3.884 10 H 0.067 0.933 11 C -0.145 4.145 12 N -0.347 5.347 13 C 0.017 3.983 14 C 0.507 3.493 15 O -0.539 6.539 16 N -0.709 5.709 17 C 0.224 3.776 18 C -0.542 4.542 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.260 1.260 26 O -0.246 6.246 27 C 0.034 3.966 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.395 0.605 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.149 8.959 -4.830 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.086 3.914 4 C -0.232 4.232 5 C -0.102 4.102 6 C -0.180 4.180 7 C -0.073 4.073 8 C -0.102 4.102 9 C 0.008 3.992 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.115 5.115 13 C -0.114 4.114 14 C 0.292 3.708 15 O -0.416 6.416 16 N -0.359 5.359 17 C 0.102 3.898 18 C -0.580 4.580 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.185 1.185 26 O -0.252 6.252 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.228 0.772 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.571 9.752 -4.478 28.656 hybrid contribution -0.256 -0.154 0.617 0.686 sum -26.827 9.598 -3.861 28.752 Atomic orbital electron populations 1.23034 0.78610 1.03851 1.01198 1.86078 1.21135 1.26913 1.88692 1.18787 0.91514 0.84240 0.96857 1.21118 0.99701 0.92342 1.10076 1.20912 0.94748 0.96777 0.97727 1.21107 0.93820 0.98570 1.04512 1.21076 1.01118 0.90513 0.94587 1.18959 0.89678 0.95410 1.06188 1.20589 0.89049 0.94418 0.95145 0.91493 1.22005 1.02699 1.01785 0.93788 1.67235 1.09368 1.38406 0.96470 1.22445 0.92178 0.93506 1.03273 1.20139 0.85630 0.85184 0.79888 1.90563 1.84421 1.22643 1.44009 1.46125 1.09941 1.18878 1.60910 1.19445 0.78879 0.96920 0.94602 1.21108 0.93200 1.02017 1.41713 0.90280 1.24802 0.96386 0.96543 0.94953 1.69888 1.04476 1.31855 1.46855 0.86805 0.78288 0.84167 0.80358 1.19908 1.20958 1.18472 1.90632 1.88948 1.31038 1.14579 1.22891 1.01572 0.83318 0.98526 0.92754 0.88312 0.92780 0.85716 0.86088 0.85893 0.83994 0.91112 0.91193 0.91459 0.90807 0.86188 0.77177 0.95749 0.96306 0.92302 0.90598 0.94464 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.28 9.56 -19.42 -0.19 -3.47 16 3 C 0.13 1.48 6.66 -39.22 -0.26 1.22 16 4 C -0.21 -2.03 9.04 -39.44 -0.36 -2.39 16 5 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 6 C -0.16 -1.64 10.04 -39.56 -0.40 -2.04 16 7 C -0.05 -0.65 6.54 -39.61 -0.26 -0.91 16 8 C -0.10 -1.25 4.73 -104.47 -0.49 -1.74 16 9 C 0.12 1.45 2.38 -68.87 -0.16 1.29 16 10 H 0.07 0.89 7.56 -51.92 -0.39 0.50 16 11 C -0.15 -1.46 8.62 37.16 0.32 -1.14 16 12 N -0.35 -5.13 3.25 -109.22 -0.36 -5.48 16 13 C 0.02 0.25 5.38 -4.97 -0.03 0.22 16 14 C 0.51 9.72 7.76 -10.99 -0.09 9.63 16 15 O -0.54 -12.01 13.37 -9.90 -0.13 -12.15 16 16 N -0.71 -14.33 5.55 -61.47 -0.34 -14.67 16 17 C 0.22 5.52 4.50 -5.19 -0.02 5.50 16 18 C -0.54 -14.92 9.83 -34.44 -0.34 -15.25 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 20 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 22 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 O -0.25 -4.16 10.03 -29.37 -0.29 -4.45 16 27 C 0.03 0.52 10.10 101.05 1.02 1.54 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 31 H 0.12 0.89 6.30 -52.49 -0.33 0.56 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.84 6.57 -52.48 -0.34 1.50 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.59 6.11 -51.93 -0.32 0.28 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.12 1.39 5.61 -51.93 -0.29 1.10 16 40 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 41 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 42 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.08 1.32 6.03 -51.93 -0.31 1.01 16 45 H 0.04 0.50 5.24 -51.93 -0.27 0.23 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -33.73 369.68 -6.91 -40.64 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.70 Total: 4.95 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -0.57 Total: -1.99 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.08 Total: -46.01 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.61 Total: -20.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.73 -6.91 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932550948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.857 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds