Wall clock time and date at job start Tue Mar 31 2020 16:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99732 * 2 1 4 4 C 1.38746 * 120.05818 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94666 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05633 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10710 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.06058 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02765 * 179.74501 * 8 7 6 10 10 H 1.09008 * 109.46918 * 149.15056 * 9 8 7 11 11 C 1.53000 * 109.47388 * 269.15130 * 9 8 7 12 12 N 1.46899 * 109.47470 * 29.15513 * 9 8 7 13 13 C 1.46904 * 111.00089 * 189.99528 * 12 9 8 14 14 C 1.50702 * 109.46960 * 170.41132 * 13 12 9 15 15 O 1.21286 * 119.99855 * 3.25808 * 14 13 12 16 16 N 1.34774 * 119.99962 * 183.25343 * 14 13 12 17 17 C 1.46501 * 119.99944 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46907 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99634 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99349 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47005 * 89.99683 * 22 20 18 24 24 H 1.48504 * 109.46828 * 209.99596 * 22 20 18 25 25 H 1.48491 * 109.47074 * 329.99664 * 22 20 18 26 26 O 1.46296 * 111.00134 * 66.03966 * 12 9 8 27 27 C 1.42902 * 114.00224 * 247.27193 * 26 12 9 28 28 H 1.09005 * 109.47249 * 60.00620 * 1 2 3 29 29 H 1.09002 * 109.46944 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47394 * 299.99906 * 1 2 3 31 31 H 1.08002 * 120.03013 * 0.04530 * 4 3 2 32 32 H 1.08004 * 119.97313 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.94493 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.96608 * 179.97438 * 7 6 5 35 35 H 1.09006 * 109.46653 * 300.00352 * 11 9 8 36 36 H 1.09002 * 109.46731 * 60.00216 * 11 9 8 37 37 H 1.08995 * 109.47338 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.47018 * 290.40812 * 13 12 9 39 39 H 1.08999 * 109.46666 * 50.41452 * 13 12 9 40 40 H 0.97005 * 119.99590 * 0.02562 * 16 14 13 41 41 H 1.08990 * 109.47602 * 300.00382 * 17 16 14 42 42 H 1.09004 * 109.46675 * 60.00539 * 17 16 14 43 43 H 0.97005 * 119.99275 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.46753 * 307.48315 * 27 26 12 45 45 H 1.08994 * 109.47297 * 67.48135 * 27 26 12 46 46 H 1.09001 * 109.47538 * 187.48399 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 4.0559 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0222 -0.0047 10 1 3.7149 -0.7647 0.5232 11 6 4.5086 -0.4145 -1.4487 12 7 5.5371 0.2711 0.6654 13 6 6.4582 -0.8572 0.4745 14 6 7.8302 -0.4744 0.9666 15 8 8.0086 0.6077 1.4845 16 7 8.8589 -1.3345 0.8312 17 6 10.1928 -0.9622 1.3090 18 6 11.1554 -2.0903 1.0411 19 1 10.8084 -2.9940 0.5624 20 6 12.4791 -1.9686 1.4072 21 7 13.3192 -2.9530 1.1728 22 14 13.0792 -0.4057 2.2358 23 1 12.9423 -0.5423 3.7082 24 1 14.5055 -0.1785 1.8902 25 1 12.2669 0.7459 1.7679 26 8 5.3402 0.5525 2.0874 27 6 5.6607 1.8930 2.4646 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2128 2.3203 -0.0002 32 1 1.3339 4.5114 -0.0011 33 1 3.7921 4.6382 -0.0005 34 1 5.1343 2.5753 0.0000 35 1 3.5562 -0.5992 -1.9458 36 1 5.0474 0.3724 -1.9765 37 1 5.1032 -1.3280 -1.4525 38 1 6.0982 -1.7191 1.0363 39 1 6.5093 -1.1093 -0.5847 40 1 8.7162 -2.1999 0.4167 41 1 10.5286 -0.0660 0.7875 42 1 10.1531 -0.7657 2.3805 43 1 14.2506 -2.8672 1.4300 44 1 6.6656 2.1371 2.1197 45 1 4.9447 2.5789 2.0120 46 1 5.6166 1.9857 3.5498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932550948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:11 Heat of formation + Delta-G solvation = -52.606711 kcal Electronic energy + Delta-G solvation = -27763.004959 eV Core-core repulsion = 23847.922078 eV Total energy + Delta-G solvation = -3915.082881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34208 -40.50469 -38.81532 -37.80275 -36.07069 -35.88589 -34.37091 -32.86988 -31.09062 -30.43094 -29.64231 -28.14453 -27.84205 -26.32728 -24.55047 -23.61762 -22.87512 -21.57786 -21.03549 -19.37563 -18.87923 -18.27017 -17.70944 -17.47202 -16.95201 -16.68019 -16.53825 -16.28837 -15.99351 -15.95109 -15.51020 -15.35322 -14.92978 -14.63521 -14.57456 -14.48916 -14.29688 -14.02562 -13.76301 -13.57545 -13.32590 -13.05264 -12.92052 -12.72429 -12.67886 -12.58313 -12.42307 -12.18193 -11.97093 -11.92463 -11.64060 -11.48681 -10.91979 -10.90557 -10.59638 -9.88562 -9.77395 -9.62277 -9.08206 -8.39132 -6.45586 0.39121 0.51480 1.33100 1.35175 1.48017 1.50161 1.81163 2.28736 2.40513 2.44617 2.83062 2.96464 3.49691 3.82337 3.97141 4.04194 4.13706 4.20109 4.23481 4.28705 4.36277 4.40437 4.41828 4.47562 4.56293 4.68314 4.74275 4.75387 4.79611 4.82575 4.85805 4.91862 5.02844 5.06235 5.10712 5.23288 5.28085 5.36429 5.44307 5.58935 5.59479 5.76733 5.90897 6.02901 6.12004 6.47887 6.55672 6.89891 7.17782 7.49006 8.75629 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.025195 B = 0.002696 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.073724 B =10383.076854 C =11005.821395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.169 4.169 7 C -0.069 4.069 8 C -0.123 4.123 9 C 0.120 3.880 10 H 0.057 0.943 11 C -0.141 4.141 12 N -0.351 5.351 13 C 0.025 3.975 14 C 0.505 3.495 15 O -0.571 6.571 16 N -0.708 5.708 17 C 0.237 3.763 18 C -0.545 4.545 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.932 5.932 22 Si 0.938 3.062 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.260 1.260 26 O -0.272 6.272 27 C 0.042 3.958 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.408 0.592 41 H 0.013 0.987 42 H 0.007 0.993 43 H 0.272 0.728 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.441 9.896 -5.285 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.099 4.099 6 C -0.187 4.187 7 C -0.087 4.087 8 C -0.124 4.124 9 C 0.012 3.988 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.120 5.120 13 C -0.106 4.106 14 C 0.291 3.709 15 O -0.450 6.450 16 N -0.359 5.359 17 C 0.113 3.887 18 C -0.583 4.583 19 H 0.078 0.922 20 C -0.175 4.175 21 N -0.571 5.571 22 Si 0.761 3.239 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.184 1.184 26 O -0.276 6.276 27 C -0.055 4.055 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.171 0.829 40 H 0.243 0.757 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.901 10.673 -4.940 31.202 hybrid contribution 0.329 -0.482 0.711 0.920 sum -28.571 10.191 -4.230 30.628 Atomic orbital electron populations 1.23311 0.76619 1.05364 1.02178 1.86049 1.23254 1.26769 1.88632 1.18914 0.91359 0.85171 0.96966 1.21450 1.00976 0.91845 1.08931 1.21265 0.94482 0.97864 0.96325 1.21328 0.94542 0.98576 1.04220 1.20980 1.00399 0.91342 0.96022 1.19039 0.90491 0.95254 1.07596 1.20652 0.87734 0.94590 0.95839 0.92453 1.22006 1.03512 1.02134 0.92170 1.67285 1.10791 1.38670 0.95220 1.22459 0.89100 0.93807 1.05190 1.20930 0.86855 0.84298 0.78816 1.90564 1.85148 1.24046 1.45237 1.45961 1.08785 1.19899 1.61261 1.19027 0.80588 0.95325 0.93775 1.21311 0.93903 1.02095 1.40972 0.92188 1.25599 0.96729 0.99485 0.95648 1.69988 1.05060 1.33799 1.48223 0.85854 0.78137 0.80354 0.79512 1.19240 1.19821 1.18402 1.90576 1.89042 1.31660 1.16368 1.22820 1.00390 0.83247 0.99078 0.91388 0.86700 0.92073 0.83262 0.83260 0.84502 0.85814 0.90073 0.91499 0.90080 0.89265 0.82879 0.75651 0.96917 0.97505 0.91893 0.93173 0.93049 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.41 9.56 -92.40 -0.88 -7.29 16 3 C 0.12 2.55 6.66 22.51 0.15 2.70 16 4 C -0.21 -3.53 9.04 22.36 0.20 -3.33 16 5 C -0.08 -1.29 10.04 22.25 0.22 -1.06 16 6 C -0.17 -3.19 10.04 22.28 0.22 -2.97 16 7 C -0.07 -1.63 6.54 22.25 0.15 -1.48 16 8 C -0.12 -2.93 4.73 -19.77 -0.09 -3.02 16 9 C 0.12 2.88 2.38 44.17 0.11 2.99 16 10 H 0.06 1.48 7.56 -2.38 -0.02 1.46 16 11 C -0.14 -2.60 8.62 71.98 0.62 -1.98 16 12 N -0.35 -10.19 3.25 -499.45 -1.63 -11.81 16 13 C 0.03 0.69 5.38 85.56 0.46 1.15 16 14 C 0.50 19.13 7.76 87.66 0.68 19.81 16 15 O -0.57 -25.69 13.37 11.72 0.16 -25.54 16 16 N -0.71 -28.40 5.55 -466.78 -2.59 -30.99 16 17 C 0.24 11.71 4.50 85.63 0.38 12.10 16 18 C -0.54 -30.25 9.83 25.60 0.25 -30.00 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 20 C 0.03 1.46 5.47 84.65 0.46 1.92 16 21 N -0.93 -56.00 13.96 21.45 0.30 -55.70 16 22 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 26 O -0.27 -9.20 10.03 -35.38 -0.35 -9.55 16 27 C 0.04 1.29 10.10 113.37 1.15 2.43 16 28 H 0.07 0.50 7.66 -2.38 -0.02 0.49 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.53 7.66 -2.39 -0.02 0.52 16 31 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 32 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.12 3.30 6.57 -2.91 -0.02 3.28 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.23 6.11 -2.39 -0.01 1.22 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.15 3.19 5.61 -2.39 -0.01 3.18 16 40 H 0.41 14.12 8.32 -92.70 -0.77 13.35 16 41 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 42 H 0.01 0.36 7.57 -2.38 -0.02 0.35 16 43 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 44 H 0.05 1.80 6.03 -2.38 -0.01 1.79 16 45 H 0.05 1.41 5.24 -2.39 -0.01 1.40 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -73.38 369.68 3.13 -70.24 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.17 Total: 23.59 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.07 Total: 0.57 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -3.92 Total: -98.50 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.08 Total: -42.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -73.38 3.13 -70.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932550948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.635 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds