Wall clock time and date at job start Tue Mar 31 2020 16:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99746 * 2 1 4 4 C 1.50700 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.35123 * 125.61629 * 90.00076 * 4 3 2 6 6 C 1.40365 * 107.11658 * 179.73937 * 5 4 3 7 7 C 1.36540 * 106.70643 * 0.24406 * 6 5 4 8 8 C 1.46659 * 125.98982 * 180.02562 * 7 6 5 9 9 O 1.21696 * 119.99566 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00110 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99692 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46141 * 35.00830 * 11 10 8 13 13 C 1.53036 * 109.46333 * 275.03037 * 11 10 8 14 14 C 1.53195 * 109.31435 * 178.60468 * 13 11 10 15 15 N 1.46915 * 108.76664 * 54.65437 * 14 13 11 16 16 C 1.36946 * 120.63206 * 126.40427 * 15 14 13 17 17 H 1.07997 * 119.99796 * 207.66088 * 16 15 14 18 18 C 1.38812 * 119.99399 * 27.66523 * 16 15 14 19 19 N 1.31619 * 120.00285 * 17.36663 * 18 16 15 20 20 Si 1.86798 * 119.99614 * 197.36446 * 18 16 15 21 21 H 1.48491 * 109.47160 * 90.00303 * 20 18 16 22 22 H 1.48504 * 109.46963 * 210.00278 * 20 18 16 23 23 H 1.48503 * 109.47420 * 330.00097 * 20 18 16 24 24 C 1.46924 * 118.74218 * 306.38623 * 15 14 13 25 25 C 1.53045 * 109.45801 * 154.97900 * 11 10 8 26 26 H 1.08993 * 109.50031 * 61.43462 * 25 11 10 27 27 C 1.53002 * 109.49558 * 301.36683 * 25 11 10 28 28 O 1.33933 * 125.61324 * 270.15961 * 4 3 2 29 29 H 1.08996 * 109.47635 * 299.99492 * 1 2 3 30 30 H 1.09002 * 109.47580 * 60.00397 * 1 2 3 31 31 H 1.09007 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46915 * 59.99869 * 3 2 1 33 33 H 1.08997 * 109.46830 * 300.00372 * 3 2 1 34 34 H 1.08007 * 126.44061 * 359.97438 * 5 4 3 35 35 H 1.07999 * 126.64405 * 180.25674 * 6 5 4 36 36 H 0.96995 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.49808 * 298.56669 * 13 11 10 38 38 H 1.09001 * 109.49670 * 58.66466 * 13 11 10 39 39 H 1.09002 * 109.59296 * 294.86560 * 14 13 11 40 40 H 1.09002 * 109.58330 * 174.43815 * 14 13 11 41 41 H 0.97003 * 119.99812 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58816 * 293.82471 * 24 15 14 43 43 H 1.08996 * 109.59464 * 173.39615 * 24 15 14 44 44 H 1.09004 * 109.46806 * 60.00002 * 27 25 11 45 45 H 1.08998 * 109.47041 * 179.97438 * 27 25 11 46 46 H 1.09002 * 109.47124 * 300.00533 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2974 1.1243 -1.0975 6 6 5.6246 1.0255 -0.6516 7 6 5.5813 1.0270 0.7131 8 6 6.7368 0.9408 1.6122 9 8 7.8606 0.8581 1.1524 10 7 6.5542 0.9531 2.9474 11 6 7.7085 0.8664 3.8453 12 1 8.5529 1.3953 3.4034 13 6 8.0811 -0.6028 4.0566 14 6 9.3095 -0.6881 4.9679 15 7 9.0297 0.0475 6.2084 16 6 9.1889 -0.5549 7.4279 17 1 8.5989 -0.2297 8.2720 18 6 10.1088 -1.5834 7.5790 19 7 11.0554 -1.7569 6.6811 20 14 10.0032 -2.7212 9.0567 21 1 9.1350 -3.8801 8.7281 22 1 11.3628 -3.2049 9.4071 23 1 9.4281 -1.9830 10.2098 24 6 8.5762 1.4420 6.1160 25 6 7.3561 1.5034 5.1916 26 1 6.5279 0.9595 5.6457 27 6 6.9512 2.9629 4.9755 28 8 4.2893 1.1222 1.0898 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.9661 1.1500 -2.1252 35 1 6.5088 0.9609 -1.2684 36 1 5.6586 1.0186 3.3138 37 1 7.2459 -1.1267 4.5216 38 1 8.3092 -1.0622 3.0948 39 1 10.1689 -0.2439 4.4655 40 1 9.5195 -1.7319 5.2014 41 1 11.6985 -2.4754 6.7870 42 1 9.3757 2.0600 5.7073 43 1 8.3023 1.8037 7.1070 44 1 6.0847 3.0057 4.3156 45 1 6.6999 3.4160 5.9345 46 1 7.7802 3.5067 4.5224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942408696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:21 Heat of formation + Delta-G solvation = -67.778591 kcal Electronic energy + Delta-G solvation = -27383.530064 eV Core-core repulsion = 23467.789281 eV Total energy + Delta-G solvation = -3915.740783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.80741 -41.06566 -39.21642 -38.80988 -36.30652 -34.48776 -34.06138 -32.96661 -32.46003 -31.50202 -28.53196 -27.43807 -27.06345 -26.26283 -24.29739 -22.97811 -22.66781 -22.62919 -21.42338 -20.93422 -19.37226 -18.65262 -17.91863 -17.41788 -17.32973 -16.90855 -16.78532 -16.62181 -15.82930 -15.78841 -15.61394 -15.27101 -14.83071 -14.75020 -14.56345 -14.44857 -14.08103 -14.03532 -13.63276 -13.56571 -13.07754 -13.03925 -12.89353 -12.74961 -12.62155 -12.36033 -12.34694 -12.11434 -12.04384 -11.74096 -11.62142 -11.50869 -11.18236 -11.11591 -10.73647 -10.58656 -10.21428 -9.69270 -8.73280 -7.88328 -5.34438 -0.14270 1.15890 1.44544 1.47193 1.48957 1.57647 2.02527 2.08967 2.50808 2.96546 3.27161 3.53285 3.62974 3.70404 3.82473 3.86155 3.98554 4.12328 4.19907 4.29410 4.33924 4.50931 4.55317 4.57209 4.60564 4.67320 4.68969 4.73737 4.82810 4.83322 4.87785 4.91702 4.97934 5.05997 5.10564 5.25495 5.31005 5.35316 5.41131 5.48769 5.62284 5.67682 5.76342 6.09691 6.36995 6.40012 6.96793 7.11908 7.82603 8.35392 9.18792 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.002642 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.298217 B =10596.437127 C =10994.020102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.139 3.861 4 C 0.007 3.993 5 C -0.191 4.191 6 C -0.125 4.125 7 C -0.088 4.088 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.696 5.696 11 C 0.168 3.832 12 H 0.065 0.935 13 C -0.134 4.134 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.074 0.926 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.264 1.264 24 C 0.150 3.850 25 C -0.100 4.100 26 H 0.078 0.922 27 C -0.134 4.134 28 O -0.164 6.164 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.189 0.811 35 H 0.166 0.834 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.048 0.952 39 H -0.007 1.007 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.013 0.987 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.785 9.634 -15.058 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.063 3.937 4 C -0.045 4.045 5 C -0.210 4.210 6 C -0.146 4.146 7 C -0.140 4.140 8 C 0.386 3.614 9 O -0.439 6.439 10 N -0.346 5.346 11 C 0.064 3.936 12 H 0.083 0.917 13 C -0.174 4.174 14 C 0.056 3.944 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.091 0.909 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.797 3.203 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.189 1.189 24 C 0.024 3.976 25 C -0.121 4.121 26 H 0.097 0.903 27 C -0.192 4.192 28 O -0.060 6.060 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.206 0.794 35 H 0.184 0.816 36 H 0.250 0.750 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.854 9.327 -15.001 28.885 hybrid contribution 0.345 -0.798 0.680 1.104 sum -22.509 8.529 -14.321 28.008 Atomic orbital electron populations 1.22997 0.78117 1.04131 1.01740 1.87947 1.22397 1.27511 1.95836 1.21017 0.81835 0.85896 1.04966 1.22996 0.94225 1.03322 0.83933 1.21972 0.91080 1.06722 1.01229 1.22255 0.99969 0.99801 0.92582 1.21904 0.82052 1.15177 0.94911 1.16810 0.86079 0.76466 0.82091 1.90876 1.23779 1.52470 1.76763 1.45961 1.11320 1.72525 1.04774 1.20816 0.87588 0.95618 0.89609 0.91650 1.22362 0.99792 0.96480 0.98808 1.20474 0.91668 0.97185 0.85035 1.44352 1.78163 1.08666 1.02055 1.19566 1.15212 1.15112 0.89239 0.90863 1.25860 0.95092 1.03085 1.00868 1.70207 1.16446 1.33081 1.38628 0.85234 0.76322 0.79112 0.79592 1.21342 1.22378 1.18889 1.21080 0.93289 0.85216 0.97972 1.21784 0.99390 0.97472 0.93458 0.90324 1.21720 1.01300 0.93640 1.02555 1.83983 1.15862 1.70383 1.35795 0.92647 0.91702 0.88882 0.89726 0.86218 0.79357 0.81612 0.74976 0.92158 0.93320 0.98902 0.92434 0.94139 0.96856 0.91418 0.91525 0.90844 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.45 10.69 -148.98 -1.59 -8.04 16 3 C 0.14 1.55 6.46 71.24 0.46 2.01 16 4 C 0.01 0.13 6.94 24.97 0.17 0.31 16 5 C -0.19 -3.33 10.77 22.07 0.24 -3.09 16 6 C -0.13 -2.92 10.62 22.39 0.24 -2.68 16 7 C -0.09 -2.39 7.13 24.07 0.17 -2.22 16 8 C 0.60 19.47 7.75 86.44 0.67 20.14 16 9 O -0.56 -22.30 16.53 -4.33 -0.07 -22.37 16 10 N -0.70 -20.71 4.36 -446.40 -1.95 -22.66 16 11 C 0.17 5.97 1.88 45.02 0.08 6.05 16 12 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 13 C -0.13 -5.62 5.65 30.67 0.17 -5.45 16 14 C 0.18 9.41 5.31 86.37 0.46 9.87 16 15 N -0.61 -31.11 2.99 -699.11 -2.09 -33.20 16 16 C -0.26 -14.42 9.59 84.03 0.81 -13.61 16 17 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 18 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 19 N -0.94 -57.10 11.19 21.65 0.24 -56.86 16 20 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.15 6.15 5.80 86.36 0.50 6.65 16 25 C -0.10 -3.24 2.46 -10.71 -0.03 -3.27 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.13 -3.31 9.03 71.98 0.65 -2.66 16 28 O -0.16 -3.87 10.40 -5.12 -0.05 -3.92 16 29 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.41 10.12 8.06 -92.71 -0.75 9.38 16 37 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.06 3.32 6.04 -2.39 -0.01 3.31 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 44 H 0.07 1.40 7.36 -2.38 -0.02 1.39 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.68 379.35 3.01 -70.67 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.23 Total: 18.07 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.26 Total: 10.87 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.80 Total: -112.71 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.72 Total: -34.33 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.68 3.01 -70.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942408696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.894 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds