Wall clock time and date at job start Tue Mar 31 2020 16:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 113.99901 * 2 1 4 4 C 1.50701 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.35135 * 125.61526 * 89.97623 * 4 3 2 6 6 C 1.40364 * 107.11114 * 179.77881 * 5 4 3 7 7 C 1.36552 * 106.71060 * 0.35407 * 6 5 4 8 8 C 1.46651 * 125.98781 * 179.91190 * 7 6 5 9 9 O 1.21698 * 120.00006 * 359.71062 * 8 7 6 10 10 N 1.34776 * 120.00056 * 179.71613 * 8 7 6 11 11 C 1.46500 * 120.00257 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.45794 * 34.99544 * 11 10 8 13 13 C 1.53039 * 109.44728 * 275.03153 * 11 10 8 14 14 C 1.53191 * 109.30976 * 301.34953 * 13 11 10 15 15 N 1.46927 * 108.77571 * 305.36389 * 14 13 11 16 16 C 1.36940 * 120.62999 * 233.63022 * 15 14 13 17 17 H 1.07997 * 119.99912 * 27.66823 * 16 15 14 18 18 C 1.38813 * 119.99708 * 207.66687 * 16 15 14 19 19 N 1.31619 * 120.00153 * 17.36148 * 18 16 15 20 20 Si 1.86799 * 119.99979 * 197.36404 * 18 16 15 21 21 H 1.48506 * 109.47143 * 89.99595 * 20 18 16 22 22 H 1.48494 * 109.47167 * 209.99940 * 20 18 16 23 23 H 1.48508 * 109.46904 * 330.00429 * 20 18 16 24 24 C 1.46920 * 118.73836 * 53.61182 * 15 14 13 25 25 C 1.53043 * 109.46174 * 154.96751 * 11 10 8 26 26 H 1.09001 * 109.49485 * 178.62572 * 25 11 10 27 27 C 1.53001 * 109.49538 * 298.68784 * 25 11 10 28 28 O 1.33931 * 125.61565 * 269.97096 * 4 3 2 29 29 H 1.08999 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47305 * 300.00019 * 1 2 3 31 31 H 1.08997 * 109.47507 * 59.99914 * 1 2 3 32 32 H 1.08996 * 109.47025 * 59.99712 * 3 2 1 33 33 H 1.09003 * 109.46685 * 299.99938 * 3 2 1 34 34 H 1.07998 * 126.44329 * 0.02562 * 5 4 3 35 35 H 1.08000 * 126.64550 * 180.21574 * 6 5 4 36 36 H 0.96998 * 119.99891 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.50156 * 61.30091 * 13 11 10 38 38 H 1.09001 * 109.49788 * 181.39877 * 13 11 10 39 39 H 1.09005 * 109.58563 * 185.58104 * 14 13 11 40 40 H 1.08995 * 109.58908 * 65.15313 * 14 13 11 41 41 H 0.97001 * 119.99901 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58990 * 186.60292 * 24 15 14 43 43 H 1.09008 * 109.58893 * 66.17658 * 24 15 14 44 44 H 1.09002 * 109.47076 * 60.00142 * 27 25 11 45 45 H 1.08997 * 109.46858 * 179.97438 * 27 25 11 46 46 H 1.09001 * 109.47200 * 300.00170 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2965 1.1241 -1.0995 6 6 5.6240 1.0243 -0.6546 7 6 5.5816 1.0229 0.7102 8 6 6.7375 0.9324 1.6082 9 8 7.8604 0.8437 1.1475 10 7 6.5562 0.9474 2.9436 11 6 7.7109 0.8564 3.8407 12 1 8.5575 1.3806 3.3971 13 6 8.0764 -0.6144 4.0533 14 6 6.8728 -1.3551 4.6445 15 7 6.4410 -0.6582 5.8638 16 6 6.3115 -1.3365 7.0464 17 1 6.9111 -2.2151 7.2334 18 6 5.4095 -0.8949 8.0046 19 7 4.4504 -0.0581 7.6695 20 14 5.5570 -1.4880 9.7698 21 1 6.4366 -0.5644 10.5305 22 1 4.2109 -1.5178 10.3960 23 1 6.1410 -2.8533 9.7860 24 6 6.1513 0.7803 5.7904 25 6 7.3629 1.4971 5.1863 26 1 8.2132 1.4080 5.8623 27 6 7.0296 2.9756 4.9769 28 8 4.2904 1.1253 1.0878 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.9644 1.1506 -2.1269 35 1 6.5076 0.9589 -1.2722 36 1 5.6613 1.0184 3.3108 37 1 8.3467 -1.0639 3.0978 38 1 8.9198 -0.6841 4.7402 39 1 7.1579 -2.3782 4.8899 40 1 6.0578 -1.3642 3.9209 41 1 3.8199 0.2502 8.3390 42 1 5.9602 1.1662 6.7917 43 1 5.2774 0.9453 5.1600 44 1 6.1785 3.0641 4.3017 45 1 6.7813 3.4313 5.9354 46 1 7.8910 3.4845 4.5444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942408697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:27 Heat of formation + Delta-G solvation = -64.008540 kcal Electronic energy + Delta-G solvation = -28131.763690 eV Core-core repulsion = 24216.186389 eV Total energy + Delta-G solvation = -3915.577301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.79630 -41.17865 -39.17106 -38.82188 -36.01862 -34.34426 -33.74506 -33.55943 -32.33536 -31.26824 -28.47346 -27.55246 -27.12368 -26.41005 -24.24295 -23.32234 -22.74329 -22.53280 -21.38408 -20.15053 -19.58097 -18.70108 -17.93638 -17.40663 -17.01940 -16.88417 -16.76612 -16.54754 -16.05552 -15.83573 -15.43759 -15.31318 -14.83023 -14.77303 -14.61817 -14.44659 -14.07142 -14.00564 -13.62647 -13.57697 -13.09649 -12.95727 -12.90162 -12.80655 -12.58864 -12.50727 -12.37903 -12.18785 -11.82274 -11.74089 -11.55820 -11.36559 -11.15369 -11.09476 -10.75719 -10.55998 -10.18537 -9.67425 -8.68750 -7.87985 -5.32872 -0.11898 1.17782 1.47245 1.48743 1.52149 1.57148 2.06242 2.15706 2.51037 2.96468 3.26454 3.54761 3.64667 3.74539 3.85876 3.88696 4.00705 4.15025 4.19046 4.26821 4.31367 4.50793 4.54760 4.55600 4.58169 4.62733 4.71011 4.74686 4.79160 4.86931 4.88746 4.93276 4.98988 5.05639 5.09125 5.26354 5.32524 5.33862 5.44336 5.51165 5.64210 5.73785 5.80860 6.08008 6.38348 6.40301 6.95597 7.14548 7.83955 8.36155 9.18024 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003820 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.777770 B = 7328.328954 C = 8863.213918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.137 3.863 4 C 0.001 3.999 5 C -0.188 4.188 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.601 3.399 9 O -0.553 6.553 10 N -0.697 5.697 11 C 0.164 3.836 12 H 0.088 0.912 13 C -0.135 4.135 14 C 0.148 3.852 15 N -0.607 5.607 16 C -0.266 4.266 17 H 0.064 0.936 18 C -0.044 4.044 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.188 3.812 25 C -0.115 4.115 26 H 0.079 0.921 27 C -0.133 4.133 28 O -0.174 6.174 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.006 0.994 41 H 0.250 0.750 42 H 0.059 0.941 43 H 0.000 1.000 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 6.741 -17.436 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.061 3.939 4 C -0.051 4.051 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.146 4.146 8 C 0.388 3.612 9 O -0.434 6.434 10 N -0.346 5.346 11 C 0.060 3.940 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.396 4.396 17 H 0.082 0.918 18 C -0.240 4.240 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.197 1.197 24 C 0.062 3.938 25 C -0.136 4.136 26 H 0.098 0.902 27 C -0.190 4.190 28 O -0.070 6.070 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.210 0.790 35 H 0.192 0.808 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.018 0.982 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.609 6.553 -17.295 18.844 hybrid contribution -0.729 -0.299 1.269 1.494 sum -4.338 6.254 -16.026 17.742 Atomic orbital electron populations 1.22998 0.78176 1.04150 1.01671 1.87944 1.22404 1.27545 1.95812 1.21020 0.82289 0.85884 1.04706 1.23012 0.94184 1.03769 0.84128 1.21981 0.91151 1.06543 1.00967 1.22250 0.99906 0.99749 0.92159 1.22131 0.82094 1.15041 0.95340 1.16716 0.86115 0.76554 0.81817 1.90815 1.23075 1.52950 1.76593 1.46099 1.11665 1.71837 1.05029 1.20927 0.87775 0.96113 0.89183 0.89366 1.22262 0.99063 0.95688 1.00453 1.20905 0.93939 0.95153 0.87801 1.44298 1.78912 1.04679 1.05148 1.19499 1.15888 1.10720 0.93465 0.91832 1.25712 0.94964 1.00640 1.02673 1.70167 1.16282 1.37770 1.33429 0.85307 0.76428 0.78321 0.80610 1.21065 1.22168 1.19675 1.20601 0.91608 0.82632 0.98919 1.21951 1.00676 0.95797 0.95166 0.90248 1.21668 1.01587 0.94138 1.01654 1.84037 1.16476 1.70289 1.36194 0.88825 0.93180 0.91246 0.90597 0.85768 0.79016 0.80827 0.75835 0.91753 0.90562 0.93154 0.97566 0.94041 0.92233 0.98223 0.93225 0.92436 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -9.00 10.69 -148.98 -1.59 -10.59 16 3 C 0.14 2.36 6.46 71.24 0.46 2.82 16 4 C 0.00 0.03 6.94 24.97 0.17 0.20 16 5 C -0.19 -3.83 10.77 22.07 0.24 -3.59 16 6 C -0.12 -3.02 10.62 22.39 0.24 -2.78 16 7 C -0.09 -2.90 7.13 24.07 0.17 -2.73 16 8 C 0.60 20.66 7.75 86.44 0.67 21.33 16 9 O -0.55 -20.86 16.53 -4.34 -0.07 -20.93 16 10 N -0.70 -24.04 3.59 -446.39 -1.60 -25.65 16 11 C 0.16 5.66 2.21 45.02 0.10 5.76 16 12 H 0.09 2.92 7.58 -2.38 -0.02 2.90 16 13 C -0.13 -4.92 5.77 30.67 0.18 -4.74 16 14 C 0.15 6.42 6.26 86.36 0.54 6.96 16 15 N -0.61 -30.34 2.99 -699.10 -2.09 -32.43 16 16 C -0.27 -14.61 9.59 84.03 0.81 -13.81 16 17 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 18 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 19 N -0.93 -54.01 11.19 21.65 0.24 -53.76 16 20 Si 0.96 44.62 29.59 68.60 2.03 46.65 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 C 0.19 8.70 4.30 86.36 0.37 9.08 16 25 C -0.12 -4.17 2.67 -10.72 -0.03 -4.20 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 C -0.13 -4.03 9.05 71.98 0.65 -3.37 16 28 O -0.17 -5.30 10.40 -5.02 -0.05 -5.36 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 36 H 0.41 14.72 6.48 -92.71 -0.60 14.12 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 40 H 0.01 0.29 7.74 -2.39 -0.02 0.27 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.06 3.15 6.04 -2.38 -0.01 3.13 16 43 H 0.00 -0.01 6.64 -2.38 -0.02 -0.02 16 44 H 0.05 1.50 7.54 -2.39 -0.02 1.48 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.80 375.41 3.47 -65.32 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.38 Total: 26.24 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.23 Total: 10.50 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.45 Total: -111.84 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.72 Total: -36.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.80 3.47 -65.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942408697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds