Wall clock time and date at job start Tue Mar 31 2020 16:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99897 * 2 1 4 4 C 1.50704 * 109.46729 * 180.02562 * 3 2 1 5 5 C 1.35133 * 125.61929 * 89.99824 * 4 3 2 6 6 C 1.40355 * 107.11589 * 179.97438 * 5 4 3 7 7 C 1.36545 * 106.71174 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.99012 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00020 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99859 * 179.72254 * 8 7 6 11 11 C 1.46505 * 119.99721 * 180.27221 * 10 8 7 12 12 H 1.08997 * 109.46088 * 325.03094 * 11 10 8 13 13 C 1.53039 * 109.45791 * 85.00282 * 11 10 8 14 14 C 1.53195 * 109.31314 * 58.65086 * 13 11 10 15 15 N 1.46927 * 108.77278 * 54.63663 * 14 13 11 16 16 C 1.36943 * 120.62861 * 126.41171 * 15 14 13 17 17 H 1.07994 * 119.99923 * 209.01090 * 16 15 14 18 18 C 1.38814 * 120.00022 * 29.01867 * 16 15 14 19 19 N 1.31614 * 119.99899 * 15.00682 * 18 16 15 20 20 Si 1.86802 * 119.99795 * 195.01434 * 18 16 15 21 21 H 1.48497 * 109.47332 * 89.99441 * 20 18 16 22 22 H 1.48494 * 109.46680 * 209.99817 * 20 18 16 23 23 H 1.48503 * 109.46818 * 329.99585 * 20 18 16 24 24 C 1.46918 * 118.74008 * 306.38713 * 15 14 13 25 25 H 1.09000 * 109.59018 * 293.82562 * 24 15 14 26 26 C 1.52996 * 109.58805 * 173.39630 * 24 15 14 27 27 C 1.53042 * 109.45781 * 205.06858 * 11 10 8 28 28 O 1.33936 * 125.61742 * 270.26733 * 4 3 2 29 29 H 1.08994 * 109.47575 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46564 * 299.99993 * 1 2 3 31 31 H 1.08996 * 109.47277 * 59.99605 * 1 2 3 32 32 H 1.09001 * 109.47295 * 60.00473 * 3 2 1 33 33 H 1.08997 * 109.47082 * 300.00072 * 3 2 1 34 34 H 1.08004 * 126.43926 * 359.97438 * 5 4 3 35 35 H 1.08006 * 126.64738 * 180.02562 * 6 5 4 36 36 H 0.96997 * 119.99931 * 0.27865 * 10 8 7 37 37 H 1.09002 * 109.49850 * 178.60451 * 13 11 10 38 38 H 1.09001 * 109.49674 * 298.69997 * 13 11 10 39 39 H 1.09003 * 109.58446 * 174.42301 * 14 13 11 40 40 H 1.08995 * 109.59138 * 294.70580 * 14 13 11 41 41 H 0.97007 * 119.99997 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.47122 * 60.00333 * 26 24 15 43 43 H 1.09008 * 109.47400 * 180.02562 * 26 24 15 44 44 H 1.09004 * 109.47478 * 300.00401 * 26 24 15 45 45 H 1.09000 * 109.49787 * 61.30114 * 27 11 10 46 46 H 1.09001 * 109.49737 * 181.39828 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2967 1.1244 -1.0995 6 6 5.6237 1.0197 -0.6546 7 6 5.5817 1.0227 0.7102 8 6 6.7375 0.9308 1.6082 9 8 7.8604 0.8416 1.1476 10 7 6.5566 0.9505 2.9436 11 6 7.7117 0.8647 3.8407 12 1 8.4665 0.2137 3.3996 13 6 8.3014 2.2618 4.0474 14 6 7.2278 3.1829 4.6354 15 7 6.6934 2.5666 5.8574 16 6 6.6706 3.2619 7.0370 17 1 6.7371 2.7336 7.9765 18 6 6.5619 4.6457 7.0249 19 7 6.1876 5.2668 5.9266 20 14 6.9470 5.6262 8.5676 21 1 8.3873 5.9876 8.5778 22 1 6.1260 6.8634 8.5854 23 1 6.6337 4.8069 9.7659 24 6 6.1836 1.1903 5.7897 25 1 5.2945 1.1606 5.1599 26 6 5.8351 0.7026 7.1973 27 6 7.2689 0.2914 5.1888 28 8 4.2902 1.1195 1.0878 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.9645 1.1504 -2.1268 35 1 6.5071 0.9503 -1.2721 36 1 5.6616 1.0212 3.3108 37 1 9.1457 2.2023 4.7343 38 1 8.6379 2.6599 3.0902 39 1 7.6685 4.1503 4.8766 40 1 6.4250 3.3177 3.9105 41 1 6.1120 6.2339 5.9181 42 1 5.0719 1.3509 7.6279 43 1 5.4575 -0.3187 7.1450 44 1 6.7280 0.7279 7.8221 45 1 6.8705 -0.7128 5.0439 46 1 8.1229 0.2506 5.8649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947528886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:28 Heat of formation + Delta-G solvation = -41.495917 kcal Electronic energy + Delta-G solvation = -28013.572922 eV Core-core repulsion = 24098.971841 eV Total energy + Delta-G solvation = -3914.601081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 17.01 seconds Orbital eigenvalues (eV) -42.74334 -39.64762 -38.15145 -37.61476 -34.40492 -33.21298 -32.35867 -31.67276 -30.95782 -29.65826 -27.55414 -26.41805 -25.83189 -24.93457 -22.80744 -21.91502 -21.67547 -20.66805 -20.28264 -18.64922 -18.33055 -17.08012 -16.46386 -16.39939 -16.05021 -15.97483 -15.39098 -15.09656 -14.56055 -14.37284 -13.95755 -13.93881 -13.71688 -13.21486 -13.13388 -13.02482 -12.95715 -12.79734 -12.44581 -12.17082 -11.85374 -11.76850 -11.44083 -11.21012 -11.00768 -10.70339 -10.64169 -10.40971 -10.17889 -10.13162 -10.08115 -10.07755 -9.98507 -9.69599 -9.30558 -8.84078 -8.53737 -8.45588 -6.64333 -5.77490 -3.21989 0.99976 2.16580 2.52560 3.32453 3.37394 3.42099 3.44517 3.45104 3.70882 4.46288 4.48480 4.74884 4.80397 4.90843 4.99761 5.02101 5.10130 5.31170 5.34507 5.35286 5.38020 5.57075 5.60703 5.66224 5.71050 5.80049 5.97855 6.10662 6.21411 6.27151 6.30689 6.35469 6.44132 6.55294 6.60291 6.68141 6.71733 6.82858 6.93735 7.01385 7.04913 7.38324 7.69705 7.75834 7.82012 8.32252 8.46061 9.21860 9.85360 10.41871 11.30514 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003456 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.094004 B = 8100.277855 C = 8855.502127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C 0.007 3.993 5 C -0.194 4.194 6 C -0.131 4.131 7 C -0.055 4.055 8 C 0.599 3.401 9 O -0.528 6.528 10 N -0.698 5.698 11 C 0.153 3.847 12 H 0.076 0.924 13 C -0.154 4.154 14 C 0.174 3.826 15 N -0.587 5.587 16 C -0.250 4.250 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.167 3.833 25 H 0.020 0.980 26 C -0.136 4.136 27 C -0.139 4.139 28 O -0.152 6.152 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -9.717 -11.975 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.063 3.937 4 C -0.045 4.045 5 C -0.213 4.213 6 C -0.152 4.152 7 C -0.108 4.108 8 C 0.385 3.615 9 O -0.407 6.407 10 N -0.349 5.349 11 C 0.049 3.951 12 H 0.094 0.906 13 C -0.194 4.194 14 C 0.049 3.951 15 N -0.310 5.310 16 C -0.380 4.380 17 H 0.088 0.912 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.205 1.205 24 C 0.060 3.940 25 H 0.037 0.963 26 C -0.194 4.194 27 C -0.179 4.179 28 O -0.047 6.047 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.370 -9.758 -11.939 17.090 hybrid contribution -0.437 0.949 0.662 1.237 sum -7.807 -8.808 -11.277 16.300 Atomic orbital electron populations 1.22805 0.80054 1.03274 1.00397 1.87980 1.20281 1.26664 1.95542 1.20736 0.84193 0.85891 1.02847 1.22170 0.92747 1.05192 0.84422 1.21577 0.92446 1.07692 0.99582 1.21912 0.98458 1.01827 0.92961 1.22333 0.82092 1.11514 0.94847 1.16536 0.85739 0.77336 0.81913 1.90847 1.22058 1.51553 1.76236 1.46108 1.11859 1.71973 1.04940 1.20999 0.86858 0.98168 0.89074 0.90578 1.22577 1.00666 0.95754 1.00449 1.20727 0.92239 0.95534 0.86636 1.44142 1.69739 1.09802 1.07348 1.19192 1.44299 0.88846 0.85663 0.91191 1.25081 0.99949 0.97641 0.96907 1.70019 1.49582 1.08073 1.27069 0.86312 0.77907 0.79709 0.82956 1.21511 1.21859 1.20473 1.20392 0.92509 0.86430 0.94669 0.96257 1.21799 1.01764 0.98534 0.97295 1.22377 1.01566 0.98443 0.95490 1.84041 1.16323 1.69677 1.34688 0.89191 0.93499 0.93710 0.90760 0.89587 0.82584 0.82073 0.75700 0.91537 0.92678 0.89423 0.96466 0.93728 0.91918 0.94284 0.92657 0.92471 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.10 10.69 -35.23 -0.38 -4.48 16 3 C 0.14 1.34 6.46 36.01 0.23 1.57 16 4 C 0.01 0.09 6.94 -35.41 -0.25 -0.16 16 5 C -0.19 -2.28 10.77 -39.89 -0.43 -2.71 16 6 C -0.13 -1.80 10.62 -39.40 -0.42 -2.22 16 7 C -0.05 -0.88 7.13 -36.80 -0.26 -1.14 16 8 C 0.60 10.63 7.75 -12.86 -0.10 10.53 16 9 O -0.53 -10.43 16.53 5.20 0.09 -10.35 16 10 N -0.70 -12.11 4.26 -55.08 -0.23 -12.35 16 11 C 0.15 2.70 2.78 -67.89 -0.19 2.51 16 12 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 13 C -0.15 -3.08 5.77 -26.61 -0.15 -3.24 16 14 C 0.17 4.13 5.03 -3.71 -0.02 4.11 16 15 N -0.59 -14.01 2.99 -164.78 -0.49 -14.50 16 16 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16 17 H 0.07 1.79 6.21 -52.49 -0.33 1.47 16 18 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 19 N -0.90 -25.85 11.14 55.49 0.62 -25.23 16 20 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.17 3.28 3.20 -67.60 -0.22 3.07 16 25 H 0.02 0.40 6.64 -51.93 -0.34 0.05 16 26 C -0.14 -2.47 7.94 37.16 0.30 -2.17 16 27 C -0.14 -2.34 5.07 -26.61 -0.13 -2.47 16 28 O -0.15 -2.34 10.40 5.00 0.05 -2.29 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 35 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.41 6.98 6.62 -40.82 -0.27 6.70 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 40 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 43 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.05 1.01 7.45 -51.93 -0.39 0.62 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.47 372.70 -7.55 -39.02 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.04 Total: 5.84 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.74 Total: 2.30 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.11 Total: -52.08 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.24 Total: -17.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.47 -7.55 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947528886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.476 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.01 seconds