Wall clock time and date at job start Tue Mar 31 2020 16:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00241 * 2 1 4 4 C 1.50703 * 109.47105 * 180.02562 * 3 2 1 5 5 C 1.35125 * 125.62433 * 89.99993 * 4 3 2 6 6 C 1.40356 * 107.11946 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.70972 * 359.97438 * 6 5 4 8 8 C 1.46652 * 125.98800 * 179.97438 * 7 6 5 9 9 O 1.21700 * 120.00496 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00000 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00005 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46216 * 35.03204 * 11 10 8 13 13 C 1.53038 * 109.44881 * 275.06271 * 11 10 8 14 14 C 1.52765 * 109.38424 * 301.22574 * 13 11 10 15 15 N 1.46924 * 109.00726 * 305.59230 * 14 13 11 16 16 C 1.36940 * 120.62840 * 233.58467 * 15 14 13 17 17 H 1.07998 * 119.99935 * 150.69862 * 16 15 14 18 18 C 1.38807 * 119.99862 * 330.69507 * 16 15 14 19 19 N 1.31628 * 120.00356 * 336.07655 * 18 16 15 20 20 Si 1.86800 * 120.00149 * 156.07948 * 18 16 15 21 21 H 1.48504 * 109.47268 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46887 * 299.99602 * 20 18 16 23 23 H 1.48493 * 109.47418 * 59.99607 * 20 18 16 24 24 C 1.46924 * 118.74146 * 53.30696 * 15 14 13 25 25 H 1.08999 * 109.58588 * 66.57335 * 24 15 14 26 26 C 1.53001 * 109.58908 * 186.85518 * 24 15 14 27 27 C 1.53043 * 109.46077 * 155.00125 * 11 10 8 28 28 O 1.33936 * 125.61100 * 270.28966 * 4 3 2 29 29 H 1.09003 * 109.47547 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47100 * 300.00510 * 1 2 3 31 31 H 1.09004 * 109.47131 * 59.99635 * 1 2 3 32 32 H 1.08991 * 109.47464 * 59.99777 * 3 2 1 33 33 H 1.08999 * 109.46902 * 299.99783 * 3 2 1 34 34 H 1.08006 * 126.43525 * 0.02562 * 5 4 3 35 35 H 1.08005 * 126.64801 * 180.02562 * 6 5 4 36 36 H 0.96996 * 119.99419 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.49855 * 61.30453 * 13 11 10 38 38 H 1.09002 * 109.49456 * 181.40423 * 13 11 10 39 39 H 1.08997 * 109.50761 * 185.70928 * 14 13 11 40 40 H 1.08995 * 109.43030 * 65.42464 * 14 13 11 41 41 H 0.97004 * 119.99318 * 354.30837 * 19 18 16 42 42 H 1.09007 * 109.47126 * 59.99793 * 26 24 15 43 43 H 1.08998 * 109.47477 * 179.97438 * 26 24 15 44 44 H 1.08996 * 109.47286 * 300.00173 * 26 24 15 45 45 H 1.09005 * 109.49682 * 298.69266 * 27 11 10 46 46 H 1.08995 * 109.50286 * 178.59359 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 6 4.2967 1.1244 -1.0993 6 6 5.6236 1.0185 -0.6544 7 6 5.5816 1.0219 0.7104 8 6 6.7373 0.9292 1.6084 9 8 7.8601 0.8387 1.1478 10 7 6.5559 0.9443 2.9439 11 6 7.7104 0.8511 3.8409 12 1 8.5578 1.3743 3.3978 13 6 8.0737 -0.6204 4.0527 14 6 6.8744 -1.3586 4.6447 15 7 6.4381 -0.6630 5.8631 16 6 6.3076 -1.3417 7.0452 17 1 6.4567 -0.8269 7.9828 18 6 5.9835 -2.6914 7.0384 19 7 5.3548 -3.2122 6.0059 20 14 6.4396 -3.7689 8.4946 21 1 5.9862 -5.1603 8.2421 22 1 7.9132 -3.7547 8.6785 23 1 5.7828 -3.2485 9.7204 24 6 6.1504 0.7760 5.7904 25 1 5.2753 0.9424 5.1622 26 6 5.8828 1.3173 7.1963 27 6 7.3632 1.4914 5.1869 28 8 4.2900 1.1190 1.0879 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.9646 1.1512 -2.1267 35 1 6.5070 0.9488 -1.2719 36 1 5.6610 1.0168 3.3109 37 1 8.3435 -1.0697 3.0970 38 1 8.9169 -0.6916 4.7398 39 1 7.1615 -2.3809 4.8906 40 1 6.0611 -1.3696 3.9191 41 1 5.0447 -2.6389 5.2874 42 1 6.7608 1.1544 7.8215 43 1 5.6701 2.3848 7.1403 44 1 5.0276 0.7982 7.6288 45 1 7.1271 2.5452 5.0384 46 1 8.2130 1.4003 5.8632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947528887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:19 Heat of formation + Delta-G solvation = -43.676325 kcal Electronic energy + Delta-G solvation = -28130.725126 eV Core-core repulsion = 24216.029496 eV Total energy + Delta-G solvation = -3914.695630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 10.90 seconds Orbital eigenvalues (eV) -42.80604 -39.76384 -38.15586 -37.76542 -34.57657 -33.28631 -32.53566 -31.77128 -31.03547 -29.50186 -27.56054 -26.46804 -25.85592 -24.84371 -22.84619 -21.86689 -21.73397 -20.86648 -20.35370 -18.70319 -18.40843 -17.10970 -16.96752 -16.47651 -16.06985 -16.02378 -15.47148 -15.05072 -14.59305 -14.51558 -14.07973 -13.95402 -13.52110 -13.31673 -13.23861 -13.12105 -13.03180 -12.97419 -12.51938 -12.20113 -11.97915 -11.76022 -11.53633 -11.26109 -10.94835 -10.82174 -10.62412 -10.32192 -10.15646 -10.14314 -10.13003 -10.06737 -9.95939 -9.85397 -9.11717 -8.93149 -8.62040 -8.35229 -6.84603 -6.01380 -3.21323 0.93022 2.10211 2.47587 3.24307 3.33702 3.50194 3.54270 3.69914 3.71876 4.41495 4.59792 4.68419 4.74308 4.85995 4.95941 5.01230 5.08939 5.15676 5.26770 5.33819 5.39760 5.50208 5.51703 5.60111 5.65071 5.73814 5.85389 5.99945 6.09099 6.19699 6.21357 6.26386 6.37266 6.43497 6.46091 6.57248 6.70046 6.72533 6.82363 6.89886 6.98520 7.09675 7.23144 7.65667 8.05555 8.22773 8.61047 9.14073 9.88180 10.32346 11.25550 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.003762 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.032095 B = 7441.643800 C = 8654.885444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.140 3.860 4 C 0.007 3.993 5 C -0.193 4.193 6 C -0.129 4.129 7 C -0.058 4.058 8 C 0.600 3.400 9 O -0.526 6.526 10 N -0.701 5.701 11 C 0.153 3.847 12 H 0.079 0.921 13 C -0.149 4.149 14 C 0.154 3.846 15 N -0.593 5.593 16 C -0.348 4.348 17 H 0.061 0.939 18 C -0.023 4.023 19 N -0.916 5.916 20 Si 1.063 2.937 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.169 3.831 25 H 0.018 0.982 26 C -0.134 4.134 27 C -0.139 4.139 28 O -0.153 6.153 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.406 0.594 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.016 0.984 41 H 0.269 0.731 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 12.188 -12.152 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.064 3.936 4 C -0.045 4.045 5 C -0.213 4.213 6 C -0.150 4.150 7 C -0.110 4.110 8 C 0.385 3.615 9 O -0.405 6.405 10 N -0.351 5.351 11 C 0.049 3.951 12 H 0.097 0.903 13 C -0.189 4.189 14 C 0.028 3.972 15 N -0.318 5.318 16 C -0.477 4.477 17 H 0.078 0.922 18 C -0.226 4.226 19 N -0.556 5.556 20 Si 0.893 3.107 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.221 1.221 24 C 0.062 3.938 25 H 0.035 0.965 26 C -0.191 4.191 27 C -0.178 4.178 28 O -0.048 6.048 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.242 0.758 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.283 10.382 -11.509 16.375 hybrid contribution -0.617 1.784 -0.618 1.986 sum -5.900 12.165 -12.127 18.162 Atomic orbital electron populations 1.22817 0.79962 1.03509 1.00213 1.88024 1.20348 1.26333 1.95482 1.20717 0.84153 0.86169 1.02573 1.22208 0.92799 1.05079 0.84400 1.21586 0.92422 1.07627 0.99628 1.21924 0.98518 1.01586 0.92932 1.22305 0.82073 1.11810 0.94848 1.16548 0.85803 0.77265 0.81865 1.90855 1.22084 1.51347 1.76219 1.46117 1.11853 1.72167 1.04989 1.20992 0.87373 0.97536 0.89172 0.90315 1.22381 1.01077 0.94869 1.00544 1.20797 0.92092 0.96790 0.87481 1.44190 1.77182 1.03101 1.07315 1.19936 1.47190 0.95244 0.85362 0.92164 1.25828 0.96720 0.96640 1.03385 1.70778 1.33849 1.39531 1.11433 0.83552 0.76011 0.76434 0.74700 1.21191 1.22117 1.22067 1.20377 0.92627 0.85966 0.94814 0.96472 1.21770 1.02402 0.97759 0.97172 1.22367 1.01669 0.98363 0.95434 1.84038 1.16317 1.69741 1.34734 0.89008 0.93545 0.93760 0.91010 0.89646 0.82513 0.82026 0.75767 0.92414 0.91187 0.90361 0.96634 0.92022 0.92594 0.94358 0.91943 0.92374 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.43 10.69 -35.23 -0.38 -4.80 16 3 C 0.14 1.32 6.46 36.01 0.23 1.56 16 4 C 0.01 0.09 6.94 -35.41 -0.25 -0.15 16 5 C -0.19 -2.23 10.77 -39.89 -0.43 -2.66 16 6 C -0.13 -1.74 10.62 -39.40 -0.42 -2.16 16 7 C -0.06 -0.90 7.13 -36.80 -0.26 -1.16 16 8 C 0.60 10.44 7.75 -12.86 -0.10 10.34 16 9 O -0.53 -10.24 16.53 5.19 0.09 -10.15 16 10 N -0.70 -11.91 4.26 -55.08 -0.23 -12.15 16 11 C 0.15 2.67 2.78 -67.89 -0.19 2.48 16 12 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 13 C -0.15 -2.95 5.75 -26.83 -0.15 -3.10 16 14 C 0.15 3.63 4.41 -3.93 -0.02 3.61 16 15 N -0.59 -14.23 2.84 -165.04 -0.47 -14.70 16 16 C -0.35 -9.33 8.50 -15.06 -0.13 -9.46 16 17 H 0.06 1.60 6.27 -52.49 -0.33 1.27 16 18 C -0.02 -0.65 4.70 -17.43 -0.08 -0.74 16 19 N -0.92 -27.41 12.46 55.49 0.69 -26.72 16 20 Si 1.06 25.15 29.98 -169.99 -5.10 20.05 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.17 3.34 3.20 -67.60 -0.22 3.12 16 25 H 0.02 0.35 6.65 -51.93 -0.35 0.01 16 26 C -0.13 -2.46 7.94 37.16 0.30 -2.17 16 27 C -0.14 -2.32 5.07 -26.61 -0.13 -2.46 16 28 O -0.15 -2.31 10.40 4.98 0.05 -2.26 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.41 6.82 6.63 -40.82 -0.27 6.55 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 2.10 6.39 -51.93 -0.33 1.76 16 40 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 41 H 0.27 8.16 6.68 -40.82 -0.27 7.88 16 42 H 0.05 1.05 7.44 -51.92 -0.39 0.67 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -32.64 371.74 -7.46 -40.11 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.98 Total: 6.62 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.74 Total: -1.60 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.01 Total: -53.57 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.24 Total: -17.21 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -7.46 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947528887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.570 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.90 seconds