Wall clock time and date at job start Tue Mar 31 2020 16:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00053 * 2 1 4 4 C 1.50695 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35132 * 125.61930 * 89.97963 * 4 3 2 6 6 C 1.40375 * 107.11105 * 179.78334 * 5 4 3 7 7 C 1.36541 * 106.70762 * 0.41102 * 6 5 4 8 8 C 1.46658 * 125.98313 * 179.85383 * 7 6 5 9 9 O 1.21694 * 119.99959 * 359.71559 * 8 7 6 10 10 N 1.34771 * 119.99796 * 179.71249 * 8 7 6 11 11 C 1.46504 * 120.00166 * 179.72448 * 10 8 7 12 12 H 1.09003 * 109.45647 * 34.97418 * 11 10 8 13 13 C 1.53036 * 109.45896 * 275.00435 * 11 10 8 14 14 C 1.53196 * 109.31495 * 178.61361 * 13 11 10 15 15 N 1.46931 * 108.77645 * 54.62940 * 14 13 11 16 16 C 1.36935 * 120.63116 * 126.36953 * 15 14 13 17 17 H 1.07992 * 120.00299 * 221.18557 * 16 15 14 18 18 C 1.38818 * 119.99653 * 41.18861 * 16 15 14 19 19 N 1.31618 * 119.99750 * 214.83675 * 18 16 15 20 20 Si 1.86800 * 119.99965 * 34.83577 * 18 16 15 21 21 H 1.48500 * 109.47010 * 84.62692 * 20 18 16 22 22 H 1.48499 * 109.46996 * 204.62899 * 20 18 16 23 23 H 1.48498 * 109.47453 * 324.62650 * 20 18 16 24 24 C 1.46924 * 118.73713 * 306.39600 * 15 14 13 25 25 H 1.09003 * 109.58886 * 293.82029 * 24 15 14 26 26 C 1.53004 * 109.58474 * 173.53437 * 24 15 14 27 27 C 1.53036 * 109.46273 * 154.93155 * 11 10 8 28 28 O 1.33936 * 125.61340 * 270.02538 * 4 3 2 29 29 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47143 * 300.00003 * 1 2 3 31 31 H 1.08995 * 109.47098 * 60.00054 * 1 2 3 32 32 H 1.08998 * 109.47445 * 59.99882 * 3 2 1 33 33 H 1.09010 * 109.46775 * 299.99832 * 3 2 1 34 34 H 1.07990 * 126.44334 * 0.03211 * 5 4 3 35 35 H 1.07997 * 126.63857 * 180.29522 * 6 5 4 36 36 H 0.97002 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.49762 * 298.55937 * 13 11 10 38 38 H 1.09002 * 109.50188 * 58.65684 * 13 11 10 39 39 H 1.08993 * 109.58829 * 174.42018 * 14 13 11 40 40 H 1.09004 * 109.58097 * 294.70149 * 14 13 11 41 41 H 0.97001 * 119.99607 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.46579 * 60.00516 * 26 24 15 43 43 H 1.09001 * 109.47064 * 180.02562 * 26 24 15 44 44 H 1.08998 * 109.47460 * 300.00091 * 26 24 15 45 45 H 1.09002 * 109.49734 * 301.33868 * 27 11 10 46 46 H 1.09003 * 109.49853 * 61.43291 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1241 -1.0995 6 6 5.6241 1.0242 -0.6544 7 6 5.5815 1.0213 0.7103 8 6 6.7373 0.9290 1.6084 9 8 7.8602 0.8401 1.1477 10 7 6.5558 0.9428 2.9437 11 6 7.7099 0.8445 3.8409 12 1 8.5593 1.3646 3.3981 13 6 8.0676 -0.6285 4.0519 14 6 9.2956 -0.7262 4.9625 15 7 9.0244 0.0127 6.2032 16 6 9.1775 -0.5912 7.4226 17 1 8.4533 -0.4194 8.2050 18 6 10.2638 -1.4243 7.6530 19 7 10.1301 -2.4814 8.4256 20 14 11.9152 -1.0449 6.8666 21 1 12.6536 -0.0717 7.7109 22 1 12.7056 -2.2963 6.7470 23 1 11.6991 -0.4650 5.5167 24 6 8.5853 1.4117 6.1106 25 1 9.3909 2.0212 5.7010 26 6 8.2106 1.9249 7.5024 27 6 7.3652 1.4855 5.1871 28 8 4.2904 1.1242 1.0879 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.9646 1.1507 -2.1267 35 1 6.5078 0.9599 -1.2720 36 1 5.6608 1.0141 3.3109 37 1 7.2275 -1.1438 4.5176 38 1 8.2902 -1.0903 3.0900 39 1 9.4949 -1.7720 5.1962 40 1 10.1597 -0.2934 4.4583 41 1 10.8893 -3.0633 8.5869 42 1 9.0781 1.8602 8.1592 43 1 7.8847 2.9626 7.4315 44 1 7.4016 1.3174 7.9080 45 1 7.0879 2.5283 5.0331 46 1 6.5317 0.9503 5.6421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947528889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:11 Heat of formation + Delta-G solvation = -41.408809 kcal Electronic energy + Delta-G solvation = -27284.110330 eV Core-core repulsion = 23369.513026 eV Total energy + Delta-G solvation = -3914.597303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 22.44 seconds Orbital eigenvalues (eV) -42.95974 -39.71241 -38.32199 -37.79270 -34.80278 -33.41419 -32.40156 -31.85239 -31.37388 -30.13285 -27.77356 -26.56480 -26.00975 -24.62179 -22.82998 -22.21705 -21.88690 -20.74433 -20.21323 -19.52018 -18.34162 -17.27521 -16.66082 -16.37677 -16.26621 -16.15742 -15.92478 -15.07330 -14.56435 -14.50353 -14.45926 -14.09362 -13.57139 -13.41613 -13.30413 -13.20615 -13.13885 -13.07766 -12.58390 -12.35491 -12.04540 -11.93849 -11.71006 -11.28801 -11.03745 -10.96606 -10.58255 -10.51369 -10.30902 -10.28609 -10.27722 -10.21680 -9.99513 -9.82289 -9.45087 -9.03622 -8.74285 -8.33810 -6.70330 -6.06594 -3.37010 0.77793 1.95875 2.30698 3.11791 3.16645 3.44143 3.52357 3.54402 3.60663 4.25811 4.52450 4.59604 4.60683 4.70870 4.81417 4.85694 4.91469 4.92991 5.18084 5.21792 5.26861 5.37906 5.43072 5.50354 5.60272 5.65176 5.82622 6.04035 6.06043 6.07630 6.18306 6.27401 6.31204 6.43095 6.46271 6.51633 6.53920 6.59693 6.72294 6.87668 6.91697 7.03927 7.12504 7.51568 8.05083 8.10210 8.44024 9.01914 9.74064 10.22999 11.08808 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.002624 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.819547 B =10668.449862 C =11054.844130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.140 3.860 4 C 0.005 3.995 5 C -0.192 4.192 6 C -0.128 4.128 7 C -0.059 4.059 8 C 0.599 3.401 9 O -0.518 6.518 10 N -0.710 5.710 11 C 0.149 3.851 12 H 0.085 0.915 13 C -0.143 4.143 14 C 0.147 3.853 15 N -0.595 5.595 16 C -0.276 4.276 17 H 0.077 0.923 18 C 0.050 3.950 19 N -0.880 5.880 20 Si 0.842 3.158 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.259 1.259 24 C 0.168 3.832 25 H 0.029 0.971 26 C -0.133 4.133 27 C -0.134 4.134 28 O -0.155 6.155 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.402 0.598 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.374 9.811 -17.684 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.064 3.936 4 C -0.047 4.047 5 C -0.211 4.211 6 C -0.149 4.149 7 C -0.111 4.111 8 C 0.384 3.616 9 O -0.396 6.396 10 N -0.359 5.359 11 C 0.046 3.954 12 H 0.103 0.897 13 C -0.184 4.184 14 C 0.021 3.979 15 N -0.320 5.320 16 C -0.403 4.403 17 H 0.094 0.906 18 C -0.153 4.153 19 N -0.519 5.519 20 Si 0.669 3.331 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.184 1.184 24 C 0.061 3.939 25 H 0.047 0.953 26 C -0.190 4.190 27 C -0.174 4.174 28 O -0.051 6.051 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.473 9.431 -17.549 26.500 hybrid contribution 0.411 0.294 -0.436 0.668 sum -17.062 9.726 -17.985 26.630 Atomic orbital electron populations 1.22819 0.79908 1.03476 1.00331 1.88006 1.20384 1.26466 1.95514 1.20720 0.84105 0.86066 1.02676 1.22187 0.92743 1.05357 0.84406 1.21619 0.92412 1.07339 0.99708 1.21970 0.98570 1.01303 0.93022 1.22351 0.82010 1.11868 0.94906 1.16568 0.85801 0.77393 0.81876 1.90896 1.22031 1.50619 1.76073 1.46236 1.11629 1.72840 1.05214 1.21122 0.87429 0.97722 0.89102 0.89653 1.22457 1.01270 0.94720 0.99921 1.21265 0.93100 0.97186 0.86379 1.44416 1.78992 1.06341 1.02207 1.18566 1.05698 1.24814 0.91253 0.90582 1.25592 0.97806 0.95976 0.95878 1.70083 1.30788 1.11069 1.39920 0.87382 0.87055 0.77760 0.80943 1.21514 1.22411 1.18378 1.20483 0.92383 0.87188 0.93798 0.95347 1.21750 1.02326 0.97899 0.97041 1.22367 1.01205 0.99301 0.94526 1.84004 1.16366 1.69988 1.34766 0.89036 0.93553 0.93649 0.90994 0.89576 0.82474 0.81948 0.76380 0.91670 0.92452 0.91166 0.95494 0.92721 0.91610 0.94295 0.92469 0.92294 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.41 10.69 -35.23 -0.38 -3.79 16 3 C 0.14 0.99 6.46 36.00 0.23 1.22 16 4 C 0.01 0.05 6.94 -35.42 -0.25 -0.19 16 5 C -0.19 -1.85 10.77 -39.88 -0.43 -2.28 16 6 C -0.13 -1.50 10.62 -39.39 -0.42 -1.92 16 7 C -0.06 -0.78 7.13 -36.80 -0.26 -1.05 16 8 C 0.60 9.27 7.75 -12.86 -0.10 9.17 16 9 O -0.52 -9.60 16.52 5.19 0.09 -9.51 16 10 N -0.71 -10.23 5.07 -55.08 -0.28 -10.50 16 11 C 0.15 2.48 2.42 -67.89 -0.16 2.31 16 12 H 0.09 1.54 7.57 -51.93 -0.39 1.15 16 13 C -0.14 -2.69 5.65 -26.61 -0.15 -2.84 16 14 C 0.15 3.24 4.59 -3.71 -0.02 3.22 16 15 N -0.60 -13.78 2.47 -164.77 -0.41 -14.18 16 16 C -0.28 -7.39 8.42 -15.06 -0.13 -7.52 16 17 H 0.08 2.17 6.83 -52.49 -0.36 1.82 16 18 C 0.05 1.42 4.82 -17.43 -0.08 1.33 16 19 N -0.88 -26.26 13.97 55.49 0.78 -25.48 16 20 Si 0.84 21.48 27.39 -169.99 -4.66 16.82 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.26 -6.40 5.24 56.52 0.30 -6.11 16 24 C 0.17 3.24 3.49 -67.60 -0.24 3.00 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 27 C -0.13 -2.15 4.85 -26.61 -0.13 -2.27 16 28 O -0.16 -1.90 10.40 4.99 0.05 -1.85 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.40 4.94 8.36 -40.82 -0.34 4.59 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.68 7.01 -51.93 -0.36 1.31 16 40 H 0.03 0.61 6.71 -51.93 -0.35 0.26 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.06 1.30 7.68 -51.93 -0.40 0.90 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 1.07 7.42 -51.93 -0.39 0.68 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -32.67 374.53 -7.21 -39.88 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.33 Total: 1.60 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.72 Total: 1.37 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.09 Total: -50.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.24 Total: -15.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.66 Total: 16.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.67 -7.21 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947528889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.530 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.44 seconds