Wall clock time and date at job start Tue Mar 31 2020 16:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00053 * 2 1 4 4 C 1.50695 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35132 * 125.61930 * 89.97963 * 4 3 2 6 6 C 1.40375 * 107.11105 * 179.78334 * 5 4 3 7 7 C 1.36541 * 106.70762 * 0.41102 * 6 5 4 8 8 C 1.46658 * 125.98313 * 179.85383 * 7 6 5 9 9 O 1.21694 * 119.99959 * 359.71559 * 8 7 6 10 10 N 1.34771 * 119.99796 * 179.71249 * 8 7 6 11 11 C 1.46504 * 120.00166 * 179.72448 * 10 8 7 12 12 H 1.09003 * 109.45647 * 34.97418 * 11 10 8 13 13 C 1.53036 * 109.45896 * 275.00435 * 11 10 8 14 14 C 1.53196 * 109.31495 * 178.61361 * 13 11 10 15 15 N 1.46931 * 108.77645 * 54.62940 * 14 13 11 16 16 C 1.36935 * 120.63116 * 126.36953 * 15 14 13 17 17 H 1.07992 * 120.00299 * 221.18557 * 16 15 14 18 18 C 1.38818 * 119.99653 * 41.18861 * 16 15 14 19 19 N 1.31618 * 119.99750 * 214.83675 * 18 16 15 20 20 Si 1.86800 * 119.99965 * 34.83577 * 18 16 15 21 21 H 1.48500 * 109.47010 * 84.62692 * 20 18 16 22 22 H 1.48499 * 109.46996 * 204.62899 * 20 18 16 23 23 H 1.48498 * 109.47453 * 324.62650 * 20 18 16 24 24 C 1.46924 * 118.73713 * 306.39600 * 15 14 13 25 25 H 1.09003 * 109.58886 * 293.82029 * 24 15 14 26 26 C 1.53004 * 109.58474 * 173.53437 * 24 15 14 27 27 C 1.53036 * 109.46273 * 154.93155 * 11 10 8 28 28 O 1.33936 * 125.61340 * 270.02538 * 4 3 2 29 29 H 1.09006 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47143 * 300.00003 * 1 2 3 31 31 H 1.08995 * 109.47098 * 60.00054 * 1 2 3 32 32 H 1.08998 * 109.47445 * 59.99882 * 3 2 1 33 33 H 1.09010 * 109.46775 * 299.99832 * 3 2 1 34 34 H 1.07990 * 126.44334 * 0.03211 * 5 4 3 35 35 H 1.07997 * 126.63857 * 180.29522 * 6 5 4 36 36 H 0.97002 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.49762 * 298.55937 * 13 11 10 38 38 H 1.09002 * 109.50188 * 58.65684 * 13 11 10 39 39 H 1.08993 * 109.58829 * 174.42018 * 14 13 11 40 40 H 1.09004 * 109.58097 * 294.70149 * 14 13 11 41 41 H 0.97001 * 119.99607 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.46579 * 60.00516 * 26 24 15 43 43 H 1.09001 * 109.47064 * 180.02562 * 26 24 15 44 44 H 1.08998 * 109.47460 * 300.00091 * 26 24 15 45 45 H 1.09002 * 109.49734 * 301.33868 * 27 11 10 46 46 H 1.09003 * 109.49853 * 61.43291 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1241 -1.0995 6 6 5.6241 1.0242 -0.6544 7 6 5.5815 1.0213 0.7103 8 6 6.7373 0.9290 1.6084 9 8 7.8602 0.8401 1.1477 10 7 6.5558 0.9428 2.9437 11 6 7.7099 0.8445 3.8409 12 1 8.5593 1.3646 3.3981 13 6 8.0676 -0.6285 4.0519 14 6 9.2956 -0.7262 4.9625 15 7 9.0244 0.0127 6.2032 16 6 9.1775 -0.5912 7.4226 17 1 8.4533 -0.4194 8.2050 18 6 10.2638 -1.4243 7.6530 19 7 10.1301 -2.4814 8.4256 20 14 11.9152 -1.0449 6.8666 21 1 12.6536 -0.0717 7.7109 22 1 12.7056 -2.2963 6.7470 23 1 11.6991 -0.4650 5.5167 24 6 8.5853 1.4117 6.1106 25 1 9.3909 2.0212 5.7010 26 6 8.2106 1.9249 7.5024 27 6 7.3652 1.4855 5.1871 28 8 4.2904 1.1242 1.0879 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.9646 1.1507 -2.1267 35 1 6.5078 0.9599 -1.2720 36 1 5.6608 1.0141 3.3109 37 1 7.2275 -1.1438 4.5176 38 1 8.2902 -1.0903 3.0900 39 1 9.4949 -1.7720 5.1962 40 1 10.1597 -0.2934 4.4583 41 1 10.8893 -3.0633 8.5869 42 1 9.0781 1.8602 8.1592 43 1 7.8847 2.9626 7.4315 44 1 7.4016 1.3174 7.9080 45 1 7.0879 2.5283 5.0331 46 1 6.5317 0.9503 5.6421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947528889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:06 Heat of formation + Delta-G solvation = -63.921861 kcal Electronic energy + Delta-G solvation = -27285.086569 eV Core-core repulsion = 23369.513026 eV Total energy + Delta-G solvation = -3915.573543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.80924 -40.99884 -39.35310 -38.81878 -36.26766 -34.40382 -34.14166 -33.27457 -32.51041 -31.60625 -28.59470 -27.92993 -26.78999 -26.20114 -24.22673 -23.59533 -22.73921 -22.02670 -21.47656 -20.99377 -19.48078 -18.35600 -17.91853 -17.40371 -17.34317 -16.91874 -16.86187 -16.60537 -16.30294 -15.78920 -15.65374 -15.22909 -14.88027 -14.82924 -14.69172 -14.50709 -14.23991 -14.04344 -13.90585 -13.57146 -13.35776 -12.89885 -12.79880 -12.70908 -12.57765 -12.47905 -12.36299 -12.14099 -11.93603 -11.68899 -11.63312 -11.54851 -11.19433 -11.11840 -10.74079 -10.48110 -10.27090 -9.70079 -8.64553 -8.24710 -5.50207 -0.14895 1.15217 1.37046 1.44311 1.44839 1.52890 2.01247 2.07600 2.48434 2.94570 2.96098 3.40215 3.55165 3.74878 3.83786 3.85867 3.95491 4.19368 4.20264 4.28167 4.29035 4.50433 4.52327 4.54977 4.60205 4.61182 4.64236 4.72730 4.73727 4.83934 4.91289 4.91557 4.99032 5.04327 5.08384 5.09974 5.23428 5.30445 5.36723 5.49996 5.60640 5.75668 5.95715 6.09251 6.29407 6.38599 6.94809 7.02649 7.67439 8.18609 8.95005 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020185 B = 0.002624 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.819547 B =10668.449862 C =11054.844130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.138 3.862 4 C 0.007 3.993 5 C -0.192 4.192 6 C -0.124 4.124 7 C -0.090 4.090 8 C 0.600 3.400 9 O -0.556 6.556 10 N -0.700 5.700 11 C 0.158 3.842 12 H 0.075 0.925 13 C -0.132 4.132 14 C 0.146 3.854 15 N -0.607 5.607 16 C -0.254 4.254 17 H 0.053 0.947 18 C 0.000 4.000 19 N -0.926 5.926 20 Si 0.895 3.105 21 H -0.290 1.290 22 H -0.304 1.304 23 H -0.248 1.248 24 C 0.158 3.842 25 H 0.034 0.966 26 C -0.126 4.126 27 C -0.120 4.120 28 O -0.165 6.165 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.189 0.811 35 H 0.168 0.832 36 H 0.414 0.586 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.629 11.981 -19.925 31.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.062 3.938 4 C -0.045 4.045 5 C -0.211 4.211 6 C -0.145 4.145 7 C -0.142 4.142 8 C 0.387 3.613 9 O -0.437 6.437 10 N -0.349 5.349 11 C 0.054 3.946 12 H 0.093 0.907 13 C -0.172 4.172 14 C 0.020 3.980 15 N -0.332 5.332 16 C -0.383 4.383 17 H 0.070 0.930 18 C -0.199 4.199 19 N -0.568 5.568 20 Si 0.723 3.277 21 H -0.218 1.218 22 H -0.231 1.231 23 H -0.173 1.173 24 C 0.053 3.947 25 H 0.052 0.948 26 C -0.183 4.183 27 C -0.160 4.160 28 O -0.061 6.061 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.206 0.794 35 H 0.185 0.815 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.112 0.888 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.766 11.641 -19.811 30.310 hybrid contribution 0.936 -0.341 0.186 1.013 sum -18.831 11.300 -19.625 29.452 Atomic orbital electron populations 1.22996 0.78119 1.04136 1.01731 1.87944 1.22391 1.27510 1.95834 1.21014 0.81921 0.85901 1.04937 1.22986 0.94181 1.03355 0.83972 1.21980 0.91172 1.06724 1.01188 1.22258 0.99913 0.99744 0.92591 1.21939 0.82140 1.15160 0.94960 1.16780 0.86032 0.76397 0.82076 1.90867 1.23685 1.52421 1.76717 1.45993 1.11553 1.72571 1.04816 1.20845 0.88050 0.95785 0.89877 0.90686 1.22268 0.99415 0.96672 0.98840 1.21177 0.94593 0.95591 0.86598 1.44558 1.79120 1.08318 1.01176 1.18498 1.04354 1.23574 0.91906 0.92966 1.26057 1.00373 0.96273 0.97214 1.70162 1.31335 1.12481 1.42853 0.86522 0.83637 0.77005 0.80585 1.21758 1.23101 1.17258 1.20760 0.93828 0.84671 0.95458 0.94829 1.21683 1.00890 1.00148 0.95617 1.22199 0.99367 1.01417 0.92985 1.83983 1.15964 1.70342 1.35806 0.88876 0.92680 0.91691 0.89772 0.86252 0.79408 0.81491 0.74923 0.92080 0.92534 0.93733 0.95766 0.92934 0.93992 0.90222 0.93636 0.88823 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.32 10.69 -148.98 -1.59 -7.91 16 3 C 0.14 1.49 6.46 71.23 0.46 1.95 16 4 C 0.01 0.13 6.94 24.97 0.17 0.30 16 5 C -0.19 -3.16 10.77 22.07 0.24 -2.93 16 6 C -0.12 -2.72 10.62 22.39 0.24 -2.48 16 7 C -0.09 -2.29 7.13 24.07 0.17 -2.12 16 8 C 0.60 18.09 7.75 86.44 0.67 18.76 16 9 O -0.56 -20.47 16.52 -4.33 -0.07 -20.54 16 10 N -0.70 -19.08 5.07 -446.40 -2.26 -21.34 16 11 C 0.16 5.02 2.42 45.01 0.11 5.13 16 12 H 0.07 2.60 7.57 -2.39 -0.02 2.58 16 13 C -0.13 -4.89 5.65 30.67 0.17 -4.71 16 14 C 0.15 6.48 4.59 86.36 0.40 6.88 16 15 N -0.61 -27.98 2.47 -675.20 -1.67 -29.65 16 16 C -0.25 -13.87 8.42 84.04 0.71 -13.16 16 17 H 0.05 3.08 6.83 -2.91 -0.02 3.06 16 18 C 0.00 -0.02 4.82 84.86 0.41 0.39 16 19 N -0.93 -57.07 13.97 21.65 0.30 -56.76 16 20 Si 0.90 45.40 27.39 68.60 1.88 47.28 16 21 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 22 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 23 H -0.25 -12.00 5.24 99.48 0.52 -11.48 16 24 C 0.16 5.83 3.49 44.98 0.16 5.99 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 C -0.13 -4.34 8.08 71.98 0.58 -3.76 16 27 C -0.12 -3.53 4.85 30.67 0.15 -3.38 16 28 O -0.16 -3.73 10.40 -5.05 -0.05 -3.78 16 29 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.19 1.80 8.06 -2.92 -0.02 1.78 16 35 H 0.17 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.41 9.32 8.36 -92.71 -0.78 8.55 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 2.17 7.01 -2.39 -0.02 2.16 16 40 H 0.02 1.09 6.71 -2.38 -0.02 1.08 16 41 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.04 1.63 7.68 -2.39 -0.02 1.61 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.04 1.66 7.42 -2.39 -0.02 1.64 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -72.68 374.53 2.44 -70.24 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.02 Total: 14.18 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.88 Total: 8.29 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -3.63 Total: -107.76 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.72 Total: -32.23 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -72.68 2.44 -70.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947528889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.321 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds