Wall clock time and date at job start Tue Mar 31 2020 16:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99676 * 2 1 4 4 C 1.50701 * 109.46482 * 179.97438 * 3 2 1 5 5 C 1.35138 * 125.61651 * 89.97722 * 4 3 2 6 6 C 1.40365 * 107.11138 * 179.77394 * 5 4 3 7 7 C 1.36542 * 106.71276 * 0.35311 * 6 5 4 8 8 C 1.46652 * 125.99227 * 179.90740 * 7 6 5 9 9 O 1.21699 * 119.99938 * 359.71341 * 8 7 6 10 10 N 1.34777 * 120.00573 * 179.71585 * 8 7 6 11 11 C 1.46498 * 120.00201 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50096 * 34.92984 * 11 10 8 13 13 C 1.53197 * 109.49435 * 274.83623 * 11 10 8 14 14 N 1.46930 * 108.77476 * 294.68187 * 13 11 10 15 15 C 1.36935 * 120.62852 * 126.37256 * 14 13 11 16 16 H 1.08002 * 120.00081 * 207.69222 * 15 14 13 17 17 C 1.38815 * 120.00288 * 27.68530 * 15 14 13 18 18 N 1.31621 * 119.99487 * 17.36682 * 17 15 14 19 19 Si 1.86799 * 119.99959 * 197.36117 * 17 15 14 20 20 H 1.48493 * 109.47102 * 60.00689 * 19 17 15 21 21 H 1.48502 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47237 * 299.99798 * 19 17 15 23 23 C 1.46924 * 118.74031 * 306.39314 * 14 13 11 24 24 C 1.53194 * 108.77356 * 53.60929 * 23 14 13 25 25 C 1.53036 * 109.31218 * 305.36177 * 24 23 14 26 26 H 1.08995 * 109.45404 * 301.35140 * 25 24 23 27 27 C 1.53008 * 109.46036 * 181.38758 * 25 24 23 28 28 O 1.33936 * 125.61539 * 269.96694 * 4 3 2 29 29 H 1.09004 * 109.47030 * 60.00528 * 1 2 3 30 30 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47364 * 300.00551 * 1 2 3 32 32 H 1.08996 * 109.47670 * 60.00337 * 3 2 1 33 33 H 1.09000 * 109.47231 * 299.99396 * 3 2 1 34 34 H 1.07994 * 126.44102 * 0.02562 * 5 4 3 35 35 H 1.08005 * 126.64333 * 180.21995 * 6 5 4 36 36 H 0.96996 * 119.99320 * 359.97438 * 10 8 7 37 37 H 1.08990 * 109.58922 * 54.46947 * 13 11 10 38 38 H 1.09000 * 109.58746 * 174.89980 * 13 11 10 39 39 H 0.96997 * 119.99492 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58902 * 173.39108 * 23 14 13 41 41 H 1.08999 * 109.59202 * 293.68139 * 23 14 13 42 42 H 1.09005 * 109.49853 * 185.41439 * 24 23 14 43 43 H 1.08995 * 109.50152 * 65.31917 * 24 23 14 44 44 H 1.09001 * 109.46994 * 299.93370 * 27 25 24 45 45 H 1.08996 * 109.46954 * 59.93336 * 27 25 24 46 46 H 1.08999 * 109.47118 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2974 1.1236 -1.0976 6 6 5.6245 1.0240 -0.6516 7 6 5.5811 1.0231 0.7132 8 6 6.7362 0.9329 1.6122 9 8 7.8595 0.8440 1.1525 10 7 6.5539 0.9484 2.9475 11 6 7.7079 0.8589 3.8454 12 1 8.5552 1.3823 3.4024 13 6 8.0727 -0.6129 4.0640 14 7 6.9709 -1.2721 4.7783 15 6 6.3977 -2.4108 4.2783 16 1 5.3683 -2.6429 4.5079 17 6 7.1398 -3.2668 3.4761 18 7 8.4536 -3.1871 3.4676 19 14 6.2739 -4.5320 2.4089 20 1 5.3704 -3.8398 1.4551 21 1 7.2834 -5.3171 1.6541 22 1 5.4797 -5.4451 3.2694 23 6 6.4955 -0.6862 6.0390 24 6 6.1484 0.7864 5.7982 25 6 7.3590 1.4990 5.1911 26 1 8.2094 1.4099 5.8670 27 6 7.0275 2.9780 4.9812 28 8 4.2896 1.1256 1.0898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.9662 1.1497 -2.1252 35 1 6.5087 0.9583 -1.2684 36 1 5.6586 1.0196 3.3138 37 1 8.2257 -1.0984 3.1002 38 1 8.9844 -0.6791 4.6577 39 1 8.9721 -3.7855 2.9073 40 1 5.6079 -1.2200 6.3783 41 1 7.2777 -0.7605 6.7944 42 1 5.8861 1.2579 6.7454 43 1 5.3045 0.8538 5.1118 44 1 6.1774 3.0674 4.3049 45 1 6.7790 3.4341 5.9395 46 1 7.8898 3.4858 4.5492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967286874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:33 Heat of formation + Delta-G solvation = -42.377167 kcal Electronic energy + Delta-G solvation = -28677.304111 eV Core-core repulsion = 24762.664816 eV Total energy + Delta-G solvation = -3914.639294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 9.67 seconds Orbital eigenvalues (eV) -42.57844 -39.48194 -38.06586 -37.47065 -34.15420 -33.24622 -32.64733 -31.28383 -30.96165 -29.29353 -27.58974 -27.10046 -25.70050 -24.04943 -22.77221 -21.79108 -21.49769 -21.06943 -20.09804 -18.65834 -18.20521 -16.98285 -16.69530 -16.31813 -15.96286 -15.81962 -15.18159 -14.87458 -14.44207 -14.05606 -13.87417 -13.74357 -13.60570 -13.25702 -13.09687 -12.93379 -12.86864 -12.83963 -12.53167 -12.08096 -11.91963 -11.67577 -11.56878 -11.38571 -11.09712 -10.87298 -10.65372 -10.48819 -10.20265 -10.04825 -9.92937 -9.91098 -9.79645 -9.59855 -9.46693 -8.62276 -8.40813 -8.31006 -6.61133 -5.72113 -3.14467 1.18140 2.31883 2.69900 3.44083 3.50684 3.53815 3.54206 3.70840 3.86311 4.56255 4.56652 4.82986 4.89371 5.01153 5.07503 5.09310 5.17504 5.24627 5.26636 5.36002 5.42976 5.45940 5.59005 5.73818 5.86652 5.88975 5.93018 5.95497 6.02960 6.16371 6.29148 6.36794 6.42993 6.45131 6.54106 6.65005 6.76971 6.78802 6.85875 6.96449 7.02647 7.36382 7.69433 7.85571 8.03694 8.51130 8.63110 9.26401 9.90525 10.45589 11.35923 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009382 B = 0.005206 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.820158 B = 5376.636751 C = 6512.799044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.143 3.857 4 C -0.003 4.003 5 C -0.191 4.191 6 C -0.137 4.137 7 C -0.044 4.044 8 C 0.598 3.402 9 O -0.525 6.525 10 N -0.683 5.683 11 C 0.123 3.877 12 H 0.079 0.921 13 C 0.160 3.840 14 N -0.587 5.587 15 C -0.254 4.254 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.143 3.857 24 C -0.130 4.130 25 C -0.093 4.093 26 H 0.080 0.920 27 C -0.145 4.145 28 O -0.154 6.154 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.400 0.600 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.254 0.746 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 13.725 -4.266 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.067 3.933 4 C -0.055 4.055 5 C -0.210 4.210 6 C -0.158 4.158 7 C -0.097 4.097 8 C 0.383 3.617 9 O -0.403 6.403 10 N -0.332 5.332 11 C 0.018 3.982 12 H 0.097 0.903 13 C 0.033 3.967 14 N -0.310 5.310 15 C -0.383 4.383 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.542 5.542 19 Si 0.725 3.275 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.016 3.984 24 C -0.169 4.169 25 C -0.113 4.113 26 H 0.098 0.902 27 C -0.202 4.202 28 O -0.049 6.049 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.360 13.370 -4.318 18.068 hybrid contribution -1.022 -0.588 -0.627 1.336 sum -12.382 12.782 -4.945 18.470 Atomic orbital electron populations 1.22799 0.80234 1.03365 1.00098 1.88055 1.20113 1.26526 1.95446 1.20678 0.84362 0.85969 1.02306 1.22110 0.92659 1.06200 0.84547 1.21556 0.92505 1.07446 0.99478 1.21906 0.98437 1.02348 0.93108 1.22465 0.81943 1.10320 0.94972 1.16455 0.85646 0.77663 0.81964 1.90860 1.21973 1.51333 1.76159 1.45766 1.11225 1.71564 1.04672 1.21916 0.87421 1.00854 0.88010 0.90276 1.21222 0.89185 0.86834 0.99489 1.43968 1.39879 1.27186 1.19926 1.19037 0.93764 0.98042 1.27482 0.91935 1.24980 0.95041 0.97485 1.01630 1.69988 1.03850 1.39675 1.40697 0.86474 0.78779 0.81274 0.80933 1.20938 1.21587 1.20934 1.20928 0.97364 0.90870 0.89226 1.22092 0.96970 0.98535 0.99343 1.21315 0.99413 0.93938 0.96589 0.90208 1.21860 1.01281 0.96175 1.00929 1.84013 1.16487 1.69793 1.34606 0.93819 0.89147 0.93678 0.91213 0.89818 0.82745 0.82143 0.76428 0.88403 0.95417 0.93559 0.92822 0.96362 0.92692 0.92718 0.93093 0.93062 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.82 10.69 -35.23 -0.38 -5.19 16 3 C 0.14 1.50 6.46 36.01 0.23 1.73 16 4 C 0.00 -0.04 6.94 -35.41 -0.25 -0.29 16 5 C -0.19 -2.59 10.77 -39.88 -0.43 -3.02 16 6 C -0.14 -2.22 10.62 -39.39 -0.42 -2.64 16 7 C -0.04 -0.80 7.13 -36.80 -0.26 -1.07 16 8 C 0.60 12.23 7.75 -12.86 -0.10 12.13 16 9 O -0.52 -12.13 16.53 5.19 0.09 -12.04 16 10 N -0.68 -13.02 4.25 -55.00 -0.23 -13.25 16 11 C 0.12 2.39 2.24 -67.81 -0.15 2.24 16 12 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 13 C 0.16 3.87 4.91 -3.71 -0.02 3.85 16 14 N -0.59 -14.50 2.91 -172.32 -0.50 -15.00 16 15 C -0.25 -7.05 9.58 -15.06 -0.14 -7.20 16 16 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 18 N -0.90 -26.99 11.19 55.49 0.62 -26.37 16 19 Si 0.90 22.96 29.59 -169.99 -5.03 17.94 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 24 C -0.13 -2.10 5.20 -26.61 -0.14 -2.24 16 25 C -0.09 -1.48 2.48 -90.58 -0.22 -1.71 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 C -0.14 -1.90 9.05 37.16 0.34 -1.56 16 28 O -0.15 -2.59 10.40 4.96 0.05 -2.54 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 36 H 0.40 7.16 6.39 -40.82 -0.26 6.90 16 37 H 0.10 2.80 6.03 -51.93 -0.31 2.49 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.90 6.40 -51.93 -0.33 0.56 16 44 H 0.05 0.67 7.54 -51.93 -0.39 0.27 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.68 376.20 -7.42 -41.10 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.15 Total: 5.09 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.56 Total: 4.59 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.11 Total: -54.62 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.24 Total: -19.77 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.68 -7.42 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967286874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.273 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.67 seconds