Wall clock time and date at job start Tue Mar 31 2020 16:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99676 * 2 1 4 4 C 1.50701 * 109.46482 * 179.97438 * 3 2 1 5 5 C 1.35138 * 125.61651 * 89.97722 * 4 3 2 6 6 C 1.40365 * 107.11138 * 179.77394 * 5 4 3 7 7 C 1.36542 * 106.71276 * 0.35311 * 6 5 4 8 8 C 1.46652 * 125.99227 * 179.90740 * 7 6 5 9 9 O 1.21699 * 119.99938 * 359.71341 * 8 7 6 10 10 N 1.34777 * 120.00573 * 179.71585 * 8 7 6 11 11 C 1.46498 * 120.00201 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50096 * 34.92984 * 11 10 8 13 13 C 1.53197 * 109.49435 * 274.83623 * 11 10 8 14 14 N 1.46930 * 108.77476 * 294.68187 * 13 11 10 15 15 C 1.36935 * 120.62852 * 126.37256 * 14 13 11 16 16 H 1.08002 * 120.00081 * 207.69222 * 15 14 13 17 17 C 1.38815 * 120.00288 * 27.68530 * 15 14 13 18 18 N 1.31621 * 119.99487 * 17.36682 * 17 15 14 19 19 Si 1.86799 * 119.99959 * 197.36117 * 17 15 14 20 20 H 1.48493 * 109.47102 * 60.00689 * 19 17 15 21 21 H 1.48502 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47237 * 299.99798 * 19 17 15 23 23 C 1.46924 * 118.74031 * 306.39314 * 14 13 11 24 24 C 1.53194 * 108.77356 * 53.60929 * 23 14 13 25 25 C 1.53036 * 109.31218 * 305.36177 * 24 23 14 26 26 H 1.08995 * 109.45404 * 301.35140 * 25 24 23 27 27 C 1.53008 * 109.46036 * 181.38758 * 25 24 23 28 28 O 1.33936 * 125.61539 * 269.96694 * 4 3 2 29 29 H 1.09004 * 109.47030 * 60.00528 * 1 2 3 30 30 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47364 * 300.00551 * 1 2 3 32 32 H 1.08996 * 109.47670 * 60.00337 * 3 2 1 33 33 H 1.09000 * 109.47231 * 299.99396 * 3 2 1 34 34 H 1.07994 * 126.44102 * 0.02562 * 5 4 3 35 35 H 1.08005 * 126.64333 * 180.21995 * 6 5 4 36 36 H 0.96996 * 119.99320 * 359.97438 * 10 8 7 37 37 H 1.08990 * 109.58922 * 54.46947 * 13 11 10 38 38 H 1.09000 * 109.58746 * 174.89980 * 13 11 10 39 39 H 0.96997 * 119.99492 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58902 * 173.39108 * 23 14 13 41 41 H 1.08999 * 109.59202 * 293.68139 * 23 14 13 42 42 H 1.09005 * 109.49853 * 185.41439 * 24 23 14 43 43 H 1.08995 * 109.50152 * 65.31917 * 24 23 14 44 44 H 1.09001 * 109.46994 * 299.93370 * 27 25 24 45 45 H 1.08996 * 109.46954 * 59.93336 * 27 25 24 46 46 H 1.08999 * 109.47118 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2974 1.1236 -1.0976 6 6 5.6245 1.0240 -0.6516 7 6 5.5811 1.0231 0.7132 8 6 6.7362 0.9329 1.6122 9 8 7.8595 0.8440 1.1525 10 7 6.5539 0.9484 2.9475 11 6 7.7079 0.8589 3.8454 12 1 8.5552 1.3823 3.4024 13 6 8.0727 -0.6129 4.0640 14 7 6.9709 -1.2721 4.7783 15 6 6.3977 -2.4108 4.2783 16 1 5.3683 -2.6429 4.5079 17 6 7.1398 -3.2668 3.4761 18 7 8.4536 -3.1871 3.4676 19 14 6.2739 -4.5320 2.4089 20 1 5.3704 -3.8398 1.4551 21 1 7.2834 -5.3171 1.6541 22 1 5.4797 -5.4451 3.2694 23 6 6.4955 -0.6862 6.0390 24 6 6.1484 0.7864 5.7982 25 6 7.3590 1.4990 5.1911 26 1 8.2094 1.4099 5.8670 27 6 7.0275 2.9780 4.9812 28 8 4.2896 1.1256 1.0898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.9662 1.1497 -2.1252 35 1 6.5087 0.9583 -1.2684 36 1 5.6586 1.0196 3.3138 37 1 8.2257 -1.0984 3.1002 38 1 8.9844 -0.6791 4.6577 39 1 8.9721 -3.7855 2.9073 40 1 5.6079 -1.2200 6.3783 41 1 7.2777 -0.7605 6.7944 42 1 5.8861 1.2579 6.7454 43 1 5.3045 0.8538 5.1118 44 1 6.1774 3.0674 4.3049 45 1 6.7790 3.4341 5.9395 46 1 7.8898 3.4858 4.5492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967286874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:32 Heat of formation + Delta-G solvation = -65.381155 kcal Electronic energy + Delta-G solvation = -28678.301639 eV Core-core repulsion = 24762.664816 eV Total energy + Delta-G solvation = -3915.636822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 13.26 seconds Orbital eigenvalues (eV) -43.78727 -41.06104 -39.13644 -38.81620 -35.99555 -34.61516 -34.07173 -32.88380 -32.35307 -30.87375 -29.02436 -28.24197 -26.61160 -25.82276 -24.24277 -23.22402 -22.79117 -22.64800 -21.39627 -20.33047 -19.55639 -18.66592 -17.92523 -17.37925 -16.98100 -16.96284 -16.75132 -16.53974 -15.87400 -15.78726 -15.53529 -15.07056 -14.84377 -14.79864 -14.58878 -14.33300 -14.06906 -14.03589 -13.60177 -13.57242 -13.17207 -13.05551 -12.89922 -12.73938 -12.64688 -12.52918 -12.35848 -12.29328 -11.98058 -11.59363 -11.47099 -11.23785 -11.11670 -11.09632 -10.74399 -10.56290 -10.16268 -9.66643 -8.66684 -7.89207 -5.32789 -0.10193 1.16458 1.35759 1.41549 1.45501 1.51129 2.07579 2.29279 2.45817 2.98693 3.26358 3.58257 3.66549 3.79203 3.86009 3.89315 3.96884 4.10284 4.18798 4.27969 4.48117 4.50570 4.54074 4.59260 4.65252 4.68286 4.73234 4.75747 4.85759 4.87611 4.89341 4.93928 5.05849 5.14956 5.21007 5.23977 5.31715 5.44169 5.47305 5.55432 5.62400 5.67957 5.80512 6.10829 6.36847 6.50234 7.08552 7.12391 7.85750 8.35504 9.15547 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009382 B = 0.005206 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.820158 B = 5376.636751 C = 6512.799044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.141 3.859 4 C 0.001 3.999 5 C -0.190 4.190 6 C -0.134 4.134 7 C -0.086 4.086 8 C 0.592 3.408 9 O -0.565 6.565 10 N -0.676 5.676 11 C 0.133 3.867 12 H 0.073 0.927 13 C 0.169 3.831 14 N -0.601 5.601 15 C -0.251 4.251 16 H 0.065 0.935 17 C -0.047 4.047 18 N -0.930 5.930 19 Si 0.950 3.050 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.136 3.864 24 C -0.117 4.117 25 C -0.087 4.087 26 H 0.084 0.916 27 C -0.136 4.136 28 O -0.166 6.166 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.407 0.593 37 H 0.048 0.952 38 H 0.006 0.994 39 H 0.246 0.754 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 15.711 -4.198 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.065 3.935 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.324 5.324 11 C 0.027 3.973 12 H 0.091 0.909 13 C 0.042 3.958 14 N -0.324 5.324 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.243 4.243 18 N -0.576 5.576 19 Si 0.779 3.221 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.193 1.193 23 C 0.011 3.989 24 C -0.156 4.156 25 C -0.106 4.106 26 H 0.102 0.898 27 C -0.193 4.193 28 O -0.062 6.062 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.142 0.858 34 H 0.209 0.791 35 H 0.182 0.818 36 H 0.244 0.756 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.112 0.888 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.585 15.378 -4.208 21.608 hybrid contribution -0.140 -1.198 -0.653 1.371 sum -14.724 14.180 -4.861 21.012 Atomic orbital electron populations 1.23003 0.78038 1.04050 1.01877 1.87980 1.22568 1.27741 1.95840 1.21024 0.81581 0.85793 1.05054 1.23087 0.94441 1.03669 0.83931 1.21956 0.90903 1.06782 1.01226 1.22228 1.00076 1.00622 0.92541 1.22078 0.82215 1.14289 0.95209 1.16817 0.86022 0.76773 0.82494 1.90818 1.23771 1.53250 1.76886 1.45680 1.11322 1.71057 1.04379 1.21671 0.87770 0.97482 0.90369 0.90925 1.20910 0.88695 0.89649 0.96532 1.44161 1.39701 1.26792 1.21793 1.19346 0.93819 0.98389 1.26618 0.91717 1.25639 0.95552 0.99738 1.03374 1.70145 1.05057 1.40718 1.41725 0.85600 0.77602 0.79531 0.79410 1.21697 1.22169 1.19276 1.21149 0.97137 0.93460 0.87143 1.21971 0.96825 0.95469 1.01347 1.21288 0.99590 0.95734 0.93941 0.89751 1.21770 1.01408 0.93581 1.02519 1.83985 1.16000 1.70233 1.35961 0.91391 0.89144 0.92504 0.89644 0.85834 0.79107 0.81819 0.75644 0.93308 0.97655 0.94474 0.92680 0.96343 0.88750 0.92668 0.93087 0.90257 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.42 -9.50 10.69 -148.98 -1.59 -11.09 16 3 C 0.14 2.47 6.46 71.24 0.46 2.93 16 4 C 0.00 0.02 6.94 24.97 0.17 0.19 16 5 C -0.19 -4.75 10.77 22.07 0.24 -4.51 16 6 C -0.13 -4.30 10.62 22.39 0.24 -4.06 16 7 C -0.09 -3.17 7.13 24.07 0.17 -3.00 16 8 C 0.59 25.18 7.75 86.44 0.67 25.85 16 9 O -0.57 -27.66 16.53 -4.35 -0.07 -27.74 16 10 N -0.68 -26.20 4.25 -446.14 -1.89 -28.10 16 11 C 0.13 5.25 2.24 45.07 0.10 5.35 16 12 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 13 C 0.17 8.59 4.91 86.36 0.42 9.02 16 14 N -0.60 -30.27 2.91 -699.09 -2.04 -32.31 16 15 C -0.25 -14.24 9.58 84.03 0.81 -13.43 16 16 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 18 N -0.93 -58.59 11.19 21.65 0.24 -58.35 16 19 Si 0.95 48.53 29.59 68.60 2.03 50.56 16 20 H -0.29 -14.99 7.11 99.48 0.71 -14.29 16 21 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.14 5.38 6.52 86.36 0.56 5.95 16 24 C -0.12 -3.48 5.20 30.67 0.16 -3.32 16 25 C -0.09 -2.59 2.48 -10.77 -0.03 -2.62 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.14 -3.13 9.05 71.98 0.65 -2.47 16 28 O -0.17 -5.47 10.40 -5.15 -0.05 -5.53 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.16 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.41 14.46 6.39 -92.71 -0.59 13.86 16 37 H 0.05 2.97 6.03 -2.39 -0.01 2.96 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.05 1.66 6.40 -2.39 -0.02 1.65 16 44 H 0.05 1.19 7.54 -2.39 -0.02 1.17 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -78.00 376.20 3.31 -74.69 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.39 Total: 22.81 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.29 Total: 15.05 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.69 Total: -118.76 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.72 Total: -44.36 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -78.00 3.31 -74.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967286874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.313 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.26 seconds