Wall clock time and date at job start Tue Mar 31 2020 16:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00209 * 2 1 4 4 C 1.50700 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.61612 * 90.00009 * 4 3 2 6 6 C 1.40357 * 107.11642 * 179.76696 * 5 4 3 7 7 C 1.36546 * 106.70642 * 0.40980 * 6 5 4 8 8 C 1.46660 * 125.98880 * 179.85076 * 7 6 5 9 9 O 1.21698 * 119.99797 * 359.44044 * 8 7 6 10 10 N 1.34773 * 120.00121 * 179.71571 * 8 7 6 11 11 C 1.46503 * 119.99877 * 179.72583 * 10 8 7 12 12 H 1.08996 * 109.49884 * 324.99694 * 11 10 8 13 13 C 1.53190 * 109.49780 * 85.06639 * 11 10 8 14 14 N 1.46997 * 108.73841 * 65.34643 * 13 11 10 15 15 C 1.36934 * 120.61304 * 233.56917 * 14 13 11 16 16 H 1.08000 * 120.00105 * 151.84867 * 15 14 13 17 17 C 1.38811 * 120.00275 * 331.85129 * 15 14 13 18 18 N 1.31625 * 119.99430 * 343.07682 * 17 15 14 19 19 Si 1.86794 * 120.00596 * 163.07441 * 17 15 14 20 20 H 1.48503 * 109.47087 * 59.99962 * 19 17 15 21 21 H 1.48493 * 109.47468 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46960 * 300.00382 * 19 17 15 23 23 C 1.46926 * 118.75533 * 53.58672 * 14 13 11 24 24 C 1.53190 * 108.77925 * 306.39291 * 23 14 13 25 25 C 1.53040 * 109.30874 * 54.63442 * 24 23 14 26 26 H 1.08998 * 109.45987 * 58.66081 * 25 24 23 27 27 C 1.53005 * 109.45613 * 178.61485 * 25 24 23 28 28 O 1.33927 * 125.61697 * 270.02459 * 4 3 2 29 29 H 1.08993 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46566 * 299.99976 * 1 2 3 31 31 H 1.09003 * 109.46997 * 59.99977 * 1 2 3 32 32 H 1.08996 * 109.46865 * 60.00113 * 3 2 1 33 33 H 1.09000 * 109.47020 * 299.99995 * 3 2 1 34 34 H 1.08000 * 126.43727 * 0.05681 * 5 4 3 35 35 H 1.07999 * 126.65234 * 180.26594 * 6 5 4 36 36 H 0.97001 * 120.00085 * 359.72711 * 10 8 7 37 37 H 1.08995 * 109.58512 * 185.10068 * 13 11 10 38 38 H 1.08993 * 109.58578 * 305.52951 * 13 11 10 39 39 H 0.97008 * 119.99759 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58732 * 186.60721 * 23 14 13 41 41 H 1.09000 * 109.70349 * 66.25366 * 23 14 13 42 42 H 1.08996 * 109.49793 * 294.68508 * 24 23 14 43 43 H 1.08999 * 109.49916 * 174.58980 * 24 23 14 44 44 H 1.09007 * 109.47076 * 180.02562 * 27 25 24 45 45 H 1.08995 * 109.47239 * 300.06899 * 27 25 24 46 46 H 1.09000 * 109.47066 * 60.06981 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6247 1.0246 -0.6517 7 6 5.5810 1.0219 0.7131 8 6 6.7362 0.9300 1.6121 9 8 7.8590 0.8361 1.1523 10 7 6.5537 0.9439 2.9473 11 6 7.7071 0.8460 3.8453 12 1 8.4583 0.1919 3.4027 13 6 8.3060 2.2392 4.0621 14 7 7.3252 3.0689 4.7765 15 6 6.9446 4.2854 4.2761 16 1 5.9637 4.6782 4.4993 17 6 7.8197 5.0137 3.4820 18 7 9.1027 4.7198 3.4759 19 14 7.1765 6.4108 2.4219 20 1 6.5395 7.4359 3.2871 21 1 8.3034 7.0243 1.6744 22 1 6.1751 5.8825 1.4610 23 6 6.7612 2.5685 6.0376 24 6 6.1801 1.1716 5.7981 25 6 7.2592 0.2718 5.1914 26 1 8.1128 0.2223 5.8673 27 6 6.6924 -1.1340 4.9827 28 8 4.2896 1.1246 1.0897 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.9663 1.1511 -2.1252 35 1 6.5089 0.9600 -1.2684 36 1 5.6587 1.0187 3.3138 37 1 9.2164 2.1572 4.6558 38 1 8.5356 2.6923 3.0978 39 1 9.7142 5.2285 2.9206 40 1 5.9718 3.2395 6.3765 41 1 7.5440 2.5139 6.7942 42 1 5.3363 1.2413 5.1116 43 1 5.8448 0.7496 6.7455 44 1 7.4610 -1.7752 4.5509 45 1 6.3733 -1.5431 5.9412 46 1 5.8390 -1.0850 4.3064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967286875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:50 Heat of formation + Delta-G solvation = -43.153239 kcal Electronic energy + Delta-G solvation = -28592.432644 eV Core-core repulsion = 24677.759696 eV Total energy + Delta-G solvation = -3914.672948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -42.58315 -39.48305 -38.11530 -37.47300 -34.16408 -33.25000 -32.65013 -31.29446 -30.97662 -29.30462 -27.60965 -27.12377 -25.72586 -24.06290 -22.77615 -21.79362 -21.50280 -21.07964 -20.09925 -18.66518 -18.20784 -17.00918 -16.71060 -16.34842 -16.00530 -15.83301 -15.18930 -14.88186 -14.48171 -14.04080 -13.90820 -13.76668 -13.60348 -13.26512 -13.09699 -12.94505 -12.88542 -12.84618 -12.53714 -12.10612 -11.92632 -11.73494 -11.57063 -11.39458 -11.09727 -10.89728 -10.70059 -10.49929 -10.22572 -10.09905 -9.93443 -9.92516 -9.81062 -9.60671 -9.47577 -8.62602 -8.43847 -8.31379 -6.62784 -5.74757 -3.17807 1.18441 2.32521 2.67445 3.39776 3.46929 3.47019 3.53547 3.69900 3.82067 4.52434 4.56118 4.83702 4.90818 4.99341 5.04539 5.06725 5.17559 5.24850 5.26859 5.34553 5.35931 5.44092 5.57503 5.73755 5.86569 5.89938 5.93515 5.95510 6.03548 6.17147 6.29349 6.37357 6.42821 6.44956 6.54194 6.64870 6.71808 6.76071 6.85590 6.95866 7.02165 7.35433 7.67566 7.82325 8.03529 8.48718 8.63018 9.23608 9.87701 10.43515 11.33239 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.004783 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.169530 B = 5852.717064 C = 6945.829057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.142 3.858 4 C -0.002 4.002 5 C -0.191 4.191 6 C -0.137 4.137 7 C -0.044 4.044 8 C 0.598 3.402 9 O -0.525 6.525 10 N -0.683 5.683 11 C 0.123 3.877 12 H 0.079 0.921 13 C 0.160 3.840 14 N -0.587 5.587 15 C -0.254 4.254 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.143 3.857 24 C -0.130 4.130 25 C -0.093 4.093 26 H 0.080 0.920 27 C -0.145 4.145 28 O -0.154 6.154 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.400 0.600 37 H 0.028 0.972 38 H 0.097 0.903 39 H 0.255 0.745 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -10.549 -4.272 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.066 3.934 4 C -0.054 4.054 5 C -0.210 4.210 6 C -0.158 4.158 7 C -0.097 4.097 8 C 0.383 3.617 9 O -0.403 6.403 10 N -0.332 5.332 11 C 0.018 3.982 12 H 0.097 0.903 13 C 0.034 3.966 14 N -0.310 5.310 15 C -0.384 4.384 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.541 5.541 19 Si 0.727 3.273 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.016 3.984 24 C -0.170 4.170 25 C -0.112 4.112 26 H 0.098 0.902 27 C -0.203 4.203 28 O -0.049 6.049 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.236 0.764 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.295 -10.663 -4.323 17.583 hybrid contribution -0.879 1.119 -0.622 1.553 sum -14.174 -9.544 -4.946 17.790 Atomic orbital electron populations 1.22792 0.80231 1.03187 1.00314 1.87988 1.20130 1.26842 1.95523 1.20699 0.84353 0.85702 1.02650 1.22076 0.92620 1.06179 0.84551 1.21553 0.92497 1.07475 0.99478 1.21905 0.98393 1.02362 0.93111 1.22469 0.81957 1.10323 0.94974 1.16454 0.85602 0.77696 0.81963 1.90859 1.21880 1.51434 1.76157 1.45765 1.11254 1.71538 1.04670 1.21913 0.87363 1.00892 0.88033 0.90281 1.21223 0.89775 0.86228 0.99422 1.43982 1.49342 1.17780 1.19897 1.19031 0.96686 0.94811 1.27876 0.91978 1.25000 0.94741 0.97737 1.01659 1.69988 1.01177 1.42094 1.40883 0.86456 0.77885 0.82176 0.80795 1.20930 1.21547 1.21145 1.20927 0.96112 0.92114 0.89209 1.22094 0.97642 0.97854 0.99364 1.21313 0.99265 0.94105 0.96562 0.90217 1.21863 1.00872 0.96591 1.00960 1.84008 1.16491 1.69789 1.34610 0.89252 0.93626 0.93743 0.90980 0.89700 0.82745 0.82138 0.76422 0.95392 0.88471 0.93529 0.92835 0.96366 0.92724 0.92679 0.93015 0.93054 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.29 10.69 -35.23 -0.38 -4.67 16 3 C 0.14 1.48 6.46 36.01 0.23 1.71 16 4 C 0.00 -0.03 6.94 -35.41 -0.25 -0.28 16 5 C -0.19 -2.59 10.77 -39.89 -0.43 -3.02 16 6 C -0.14 -2.21 10.62 -39.40 -0.42 -2.63 16 7 C -0.04 -0.81 7.13 -36.79 -0.26 -1.07 16 8 C 0.60 12.22 7.75 -12.86 -0.10 12.12 16 9 O -0.52 -12.12 16.53 5.19 0.09 -12.03 16 10 N -0.68 -13.01 4.25 -55.00 -0.23 -13.25 16 11 C 0.12 2.39 2.24 -67.81 -0.15 2.24 16 12 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 13 C 0.16 3.86 4.91 -3.67 -0.02 3.84 16 14 N -0.59 -14.36 2.91 -172.27 -0.50 -14.86 16 15 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 16 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 17 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 18 N -0.90 -26.65 11.19 55.49 0.62 -26.02 16 19 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 2.87 6.52 -3.71 -0.02 2.85 16 24 C -0.13 -2.10 5.20 -26.61 -0.14 -2.24 16 25 C -0.09 -1.49 2.48 -90.57 -0.22 -1.71 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 C -0.15 -1.94 9.05 37.16 0.34 -1.61 16 28 O -0.15 -2.58 10.40 5.01 0.05 -2.53 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.40 7.16 6.39 -40.82 -0.26 6.90 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 2.76 6.06 -51.93 -0.31 2.44 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.89 6.40 -51.93 -0.33 0.56 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -32.87 376.23 -7.42 -40.30 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.15 Total: 5.48 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.56 Total: 4.57 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.11 Total: -54.13 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.24 Total: -19.24 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.87 -7.42 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967286875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.857 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds