Wall clock time and date at job start Tue Mar 31 2020 16:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00209 * 2 1 4 4 C 1.50700 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.35133 * 125.61612 * 90.00009 * 4 3 2 6 6 C 1.40357 * 107.11642 * 179.76696 * 5 4 3 7 7 C 1.36546 * 106.70642 * 0.40980 * 6 5 4 8 8 C 1.46660 * 125.98880 * 179.85076 * 7 6 5 9 9 O 1.21698 * 119.99797 * 359.44044 * 8 7 6 10 10 N 1.34773 * 120.00121 * 179.71571 * 8 7 6 11 11 C 1.46503 * 119.99877 * 179.72583 * 10 8 7 12 12 H 1.08996 * 109.49884 * 324.99694 * 11 10 8 13 13 C 1.53190 * 109.49780 * 85.06639 * 11 10 8 14 14 N 1.46997 * 108.73841 * 65.34643 * 13 11 10 15 15 C 1.36934 * 120.61304 * 233.56917 * 14 13 11 16 16 H 1.08000 * 120.00105 * 151.84867 * 15 14 13 17 17 C 1.38811 * 120.00275 * 331.85129 * 15 14 13 18 18 N 1.31625 * 119.99430 * 343.07682 * 17 15 14 19 19 Si 1.86794 * 120.00596 * 163.07441 * 17 15 14 20 20 H 1.48503 * 109.47087 * 59.99962 * 19 17 15 21 21 H 1.48493 * 109.47468 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46960 * 300.00382 * 19 17 15 23 23 C 1.46926 * 118.75533 * 53.58672 * 14 13 11 24 24 C 1.53190 * 108.77925 * 306.39291 * 23 14 13 25 25 C 1.53040 * 109.30874 * 54.63442 * 24 23 14 26 26 H 1.08998 * 109.45987 * 58.66081 * 25 24 23 27 27 C 1.53005 * 109.45613 * 178.61485 * 25 24 23 28 28 O 1.33927 * 125.61697 * 270.02459 * 4 3 2 29 29 H 1.08993 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46566 * 299.99976 * 1 2 3 31 31 H 1.09003 * 109.46997 * 59.99977 * 1 2 3 32 32 H 1.08996 * 109.46865 * 60.00113 * 3 2 1 33 33 H 1.09000 * 109.47020 * 299.99995 * 3 2 1 34 34 H 1.08000 * 126.43727 * 0.05681 * 5 4 3 35 35 H 1.07999 * 126.65234 * 180.26594 * 6 5 4 36 36 H 0.97001 * 120.00085 * 359.72711 * 10 8 7 37 37 H 1.08995 * 109.58512 * 185.10068 * 13 11 10 38 38 H 1.08993 * 109.58578 * 305.52951 * 13 11 10 39 39 H 0.97008 * 119.99759 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.58732 * 186.60721 * 23 14 13 41 41 H 1.09000 * 109.70349 * 66.25366 * 23 14 13 42 42 H 1.08996 * 109.49793 * 294.68508 * 24 23 14 43 43 H 1.08999 * 109.49916 * 174.58980 * 24 23 14 44 44 H 1.09007 * 109.47076 * 180.02562 * 27 25 24 45 45 H 1.08995 * 109.47239 * 300.06899 * 27 25 24 46 46 H 1.09000 * 109.47066 * 60.06981 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2975 1.1241 -1.0976 6 6 5.6247 1.0246 -0.6517 7 6 5.5810 1.0219 0.7131 8 6 6.7362 0.9300 1.6121 9 8 7.8590 0.8361 1.1523 10 7 6.5537 0.9439 2.9473 11 6 7.7071 0.8460 3.8453 12 1 8.4583 0.1919 3.4027 13 6 8.3060 2.2392 4.0621 14 7 7.3252 3.0689 4.7765 15 6 6.9446 4.2854 4.2761 16 1 5.9637 4.6782 4.4993 17 6 7.8197 5.0137 3.4820 18 7 9.1027 4.7198 3.4759 19 14 7.1765 6.4108 2.4219 20 1 6.5395 7.4359 3.2871 21 1 8.3034 7.0243 1.6744 22 1 6.1751 5.8825 1.4610 23 6 6.7612 2.5685 6.0376 24 6 6.1801 1.1716 5.7981 25 6 7.2592 0.2718 5.1914 26 1 8.1128 0.2223 5.8673 27 6 6.6924 -1.1340 4.9827 28 8 4.2896 1.1246 1.0897 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.9663 1.1511 -2.1252 35 1 6.5089 0.9600 -1.2684 36 1 5.6587 1.0187 3.3138 37 1 9.2164 2.1572 4.6558 38 1 8.5356 2.6923 3.0978 39 1 9.7142 5.2285 2.9206 40 1 5.9718 3.2395 6.3765 41 1 7.5440 2.5139 6.7942 42 1 5.3363 1.2413 5.1116 43 1 5.8448 0.7496 6.7455 44 1 7.4610 -1.7752 4.5509 45 1 6.3733 -1.5431 5.9412 46 1 5.8390 -1.0850 4.3064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967286875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:49 Heat of formation + Delta-G solvation = -65.255186 kcal Electronic energy + Delta-G solvation = -28593.391056 eV Core-core repulsion = 24677.759696 eV Total energy + Delta-G solvation = -3915.631360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.79240 -41.06058 -39.13292 -38.80574 -35.98653 -34.61500 -34.07272 -32.87801 -32.35505 -30.87517 -29.02458 -28.24024 -26.59782 -25.81784 -24.24078 -23.22381 -22.79278 -22.65173 -21.39814 -20.32834 -19.55789 -18.65581 -17.91487 -17.39777 -16.96795 -16.94990 -16.74582 -16.54115 -15.88861 -15.77962 -15.51434 -15.06896 -14.83498 -14.80677 -14.58646 -14.33467 -14.06753 -14.03603 -13.59801 -13.57720 -13.16531 -13.04836 -12.90423 -12.73207 -12.63004 -12.52707 -12.36664 -12.28647 -11.97675 -11.59447 -11.47182 -11.23768 -11.11751 -11.09592 -10.74672 -10.55344 -10.16257 -9.66583 -8.65545 -7.87659 -5.32511 -0.09797 1.18701 1.38172 1.42484 1.47538 1.48001 2.08987 2.27486 2.47406 2.95310 3.27896 3.58524 3.66847 3.78960 3.85894 3.88805 3.96582 4.09887 4.18179 4.27215 4.48094 4.51493 4.56200 4.60128 4.64685 4.68491 4.73165 4.75445 4.85617 4.87519 4.90527 4.93393 5.05637 5.14673 5.20678 5.23798 5.31509 5.43435 5.46994 5.55866 5.62483 5.68089 5.80264 6.07879 6.37903 6.50206 7.08526 7.13142 7.86145 8.37006 9.17235 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.004783 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.169530 B = 5852.717064 C = 6945.829057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.142 3.858 4 C 0.002 3.998 5 C -0.190 4.190 6 C -0.133 4.133 7 C -0.086 4.086 8 C 0.592 3.408 9 O -0.565 6.565 10 N -0.676 5.676 11 C 0.133 3.867 12 H 0.071 0.929 13 C 0.171 3.829 14 N -0.601 5.601 15 C -0.253 4.253 16 H 0.067 0.933 17 C -0.048 4.048 18 N -0.932 5.932 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.297 1.297 22 H -0.285 1.285 23 C 0.137 3.863 24 C -0.117 4.117 25 C -0.087 4.087 26 H 0.084 0.916 27 C -0.136 4.136 28 O -0.165 6.165 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.407 0.593 37 H 0.005 0.995 38 H 0.049 0.951 39 H 0.246 0.754 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.753 -11.519 -4.283 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.066 3.934 4 C -0.050 4.050 5 C -0.209 4.209 6 C -0.154 4.154 7 C -0.138 4.138 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.324 5.324 11 C 0.027 3.973 12 H 0.089 0.911 13 C 0.044 3.956 14 N -0.325 5.325 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.244 4.244 18 N -0.578 5.578 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.224 1.224 22 H -0.212 1.212 23 C 0.012 3.988 24 C -0.156 4.156 25 C -0.106 4.106 26 H 0.102 0.898 27 C -0.193 4.193 28 O -0.062 6.062 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.209 0.791 35 H 0.182 0.818 36 H 0.244 0.756 37 H 0.023 0.977 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.838 -11.650 -4.293 20.920 hybrid contribution 0.097 1.406 -0.620 1.540 sum -16.741 -10.243 -4.913 20.231 Atomic orbital electron populations 1.23017 0.78088 1.04291 1.01662 1.87935 1.22424 1.27086 1.95817 1.20953 0.81705 0.86027 1.04726 1.23033 0.94363 1.03673 0.83958 1.21947 0.90882 1.06819 1.01211 1.22224 1.00018 1.00638 0.92536 1.22077 0.82216 1.14286 0.95204 1.16816 0.85978 0.76819 0.82485 1.90818 1.23672 1.53365 1.76880 1.45680 1.11300 1.71073 1.04385 1.21670 0.87565 0.97754 0.90325 0.91052 1.20897 0.89620 0.88589 0.96513 1.44182 1.49332 1.17267 1.21709 1.19367 0.96545 0.95409 1.27065 0.91560 1.25702 0.94928 1.00384 1.03378 1.70158 1.02262 1.43423 1.41941 0.85546 0.76951 0.80012 0.79299 1.19339 1.22360 1.21183 1.21138 0.96004 0.94522 0.87168 1.21973 0.97174 0.95168 1.01314 1.21287 0.99626 0.95651 0.94000 0.89753 1.21774 1.00648 0.94427 1.02484 1.83980 1.16006 1.70237 1.35946 0.88386 0.92804 0.91836 0.90170 0.86314 0.79100 0.81809 0.75637 0.97722 0.93268 0.94497 0.92575 0.96437 0.92646 0.88826 0.92833 0.90259 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -8.00 10.69 -148.98 -1.59 -9.60 16 3 C 0.14 2.50 6.46 71.24 0.46 2.96 16 4 C 0.00 0.05 6.94 24.97 0.17 0.22 16 5 C -0.19 -4.74 10.77 22.07 0.24 -4.50 16 6 C -0.13 -4.27 10.62 22.39 0.24 -4.04 16 7 C -0.09 -3.16 7.13 24.07 0.17 -2.99 16 8 C 0.59 25.18 7.75 86.44 0.67 25.85 16 9 O -0.57 -27.67 16.53 -4.34 -0.07 -27.74 16 10 N -0.68 -26.24 4.25 -446.14 -1.90 -28.13 16 11 C 0.13 5.25 2.24 45.07 0.10 5.35 16 12 H 0.07 2.93 7.58 -2.39 -0.02 2.91 16 13 C 0.17 8.62 4.91 86.35 0.42 9.05 16 14 N -0.60 -29.96 2.91 -698.93 -2.04 -31.99 16 15 C -0.25 -14.08 9.58 84.03 0.81 -13.28 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.93 -57.97 11.19 21.65 0.24 -57.73 16 19 Si 0.95 47.04 29.59 68.60 2.03 49.07 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 C 0.14 5.36 6.52 86.36 0.56 5.93 16 24 C -0.12 -3.49 5.20 30.67 0.16 -3.33 16 25 C -0.09 -2.62 2.48 -10.76 -0.03 -2.65 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 C -0.14 -3.25 9.05 71.98 0.65 -2.60 16 28 O -0.17 -5.47 10.40 -5.00 -0.05 -5.52 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.41 14.48 6.39 -92.71 -0.59 13.89 16 37 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 39 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 40 H 0.06 2.15 7.93 -2.38 -0.02 2.13 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 1.67 6.40 -2.39 -0.02 1.65 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.21 7.54 -2.39 -0.02 1.20 16 Total: -1.00 -75.71 376.23 3.31 -72.40 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.39 Total: 24.15 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.29 Total: 15.09 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -3.69 Total: -117.85 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.72 Total: -42.86 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -75.71 3.31 -72.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967286875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.148 kcal (2) G-P(sol) polarization free energy of solvation -75.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds