Wall clock time and date at job start Tue Mar 31 2020 16:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99886 * 2 1 4 4 C 1.50703 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.35131 * 125.61833 * 89.99532 * 4 3 2 6 6 C 1.40361 * 107.11632 * 180.02562 * 5 4 3 7 7 C 1.36537 * 106.71052 * 0.02562 * 6 5 4 8 8 C 1.46654 * 125.99386 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00732 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00467 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49773 * 325.07146 * 11 10 8 13 13 C 1.53046 * 109.52439 * 85.14458 * 11 10 8 14 14 C 1.53045 * 109.53278 * 58.60345 * 13 11 10 15 15 C 1.52760 * 109.38321 * 61.24099 * 14 13 11 16 16 N 1.46923 * 109.00972 * 305.58613 * 15 14 13 17 17 C 1.36935 * 120.63227 * 233.58663 * 16 15 14 18 18 H 1.08000 * 120.00383 * 150.46079 * 17 16 15 19 19 C 1.38817 * 119.99983 * 330.45954 * 17 16 15 20 20 N 1.31626 * 119.99872 * 336.14227 * 19 17 16 21 21 Si 1.86797 * 120.00360 * 156.13765 * 19 17 16 22 22 H 1.48506 * 109.46511 * 60.00416 * 21 19 17 23 23 H 1.48490 * 109.47151 * 300.00571 * 21 19 17 24 24 H 1.48500 * 109.47239 * 179.97438 * 21 19 17 25 25 C 1.46931 * 118.73853 * 53.30573 * 16 15 14 26 26 H 1.09005 * 109.58235 * 66.57487 * 25 16 15 27 27 C 1.53001 * 109.58520 * 186.85416 * 25 16 15 28 28 O 1.33936 * 125.61438 * 270.32864 * 4 3 2 29 29 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47079 * 300.00128 * 1 2 3 31 31 H 1.09004 * 109.47062 * 59.99913 * 1 2 3 32 32 H 1.08997 * 109.47636 * 59.99938 * 3 2 1 33 33 H 1.09005 * 109.47556 * 299.99500 * 3 2 1 34 34 H 1.07998 * 126.44248 * 0.03921 * 5 4 3 35 35 H 1.08002 * 126.64635 * 180.02562 * 6 5 4 36 36 H 0.97002 * 119.99482 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46262 * 178.62260 * 13 11 10 38 38 H 1.08999 * 109.45834 * 298.58950 * 13 11 10 39 39 H 1.08997 * 109.49712 * 181.31719 * 14 13 11 40 40 H 1.08999 * 109.50021 * 301.41080 * 14 13 11 41 41 H 1.09002 * 109.50885 * 185.70100 * 15 14 13 42 42 H 1.09001 * 109.43410 * 65.42323 * 15 14 13 43 43 H 0.97004 * 119.99704 * 354.25846 * 20 19 17 44 44 H 1.08998 * 109.46567 * 60.00535 * 27 25 16 45 45 H 1.09003 * 109.46571 * 179.97438 * 27 25 16 46 46 H 1.08994 * 109.47319 * 300.00434 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1245 -1.0995 6 6 5.6236 1.0188 -0.6546 7 6 5.5816 1.0211 0.7101 8 6 6.7373 0.9282 1.6082 9 8 7.8601 0.8384 1.1475 10 7 6.5560 0.9422 2.9436 11 6 7.7104 0.8487 3.8407 12 1 8.4640 0.1980 3.3972 13 6 8.3034 2.2428 4.0580 14 6 7.2362 3.1662 4.6503 15 6 6.7837 2.6167 6.0019 16 7 6.3493 1.2236 5.8310 17 6 5.1118 0.8213 6.2574 18 1 4.6030 0.0133 5.7529 19 6 4.5112 1.4522 7.3383 20 7 5.2510 2.0755 8.2308 21 14 2.6530 1.4166 7.5262 22 1 2.1931 0.0085 7.6317 23 1 2.0236 2.0555 6.3427 24 1 2.2653 2.1568 8.7538 25 6 7.2655 0.2717 5.1881 26 1 8.1355 0.1144 5.8258 27 6 6.5467 -1.0602 4.9636 28 8 4.2900 1.1185 1.0879 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.9646 1.1515 -2.1268 35 1 6.5069 0.9492 -1.2722 36 1 5.6610 1.0141 3.3108 37 1 9.1471 2.1755 4.7448 38 1 8.6432 2.6457 3.1039 39 1 7.6523 4.1648 4.7830 40 1 6.3816 3.2144 3.9754 41 1 5.9539 3.2146 6.3786 42 1 7.6148 2.6565 6.7061 43 1 6.2184 2.0241 8.1800 44 1 5.6801 -0.9016 4.3217 45 1 7.2279 -1.7647 4.4862 46 1 6.2199 -1.4629 5.9223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993592826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:04 Heat of formation + Delta-G solvation = -44.908439 kcal Electronic energy + Delta-G solvation = -28534.467350 eV Core-core repulsion = 24619.718291 eV Total energy + Delta-G solvation = -3914.749059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.73799 -39.71182 -38.12017 -37.70428 -34.28441 -33.22603 -32.56165 -31.88783 -31.23210 -29.36092 -27.55359 -26.40543 -25.70715 -24.91480 -22.87536 -21.72483 -21.53012 -20.99079 -20.16781 -18.80227 -18.29202 -17.06804 -17.03303 -16.43349 -16.02574 -15.95782 -15.46865 -14.72403 -14.63035 -14.52148 -14.02448 -13.89093 -13.59910 -13.29810 -13.16621 -13.15133 -12.99217 -12.92658 -12.66911 -12.15177 -11.83849 -11.73620 -11.51172 -11.25904 -11.03588 -10.83546 -10.66100 -10.25563 -10.15052 -10.09835 -10.08935 -10.07309 -9.96626 -9.80673 -9.16602 -8.84916 -8.54330 -8.39072 -6.91750 -6.07420 -3.28637 1.00239 2.16021 2.54678 3.35191 3.43229 3.46405 3.48483 3.66760 3.74875 4.48194 4.54105 4.78135 4.80479 4.92283 5.03774 5.04651 5.11857 5.14217 5.28834 5.40196 5.43669 5.52155 5.57317 5.59700 5.70893 5.78809 5.82039 6.00716 6.12793 6.16333 6.26686 6.32627 6.37188 6.47260 6.52565 6.61240 6.72529 6.77318 6.78855 6.91950 6.97097 7.07934 7.18523 7.84973 7.99032 8.36572 8.55468 9.07211 9.81299 10.25132 11.19522 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005009 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.815323 B = 5588.803705 C = 7673.544117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.139 3.861 4 C 0.008 3.992 5 C -0.195 4.195 6 C -0.133 4.133 7 C -0.055 4.055 8 C 0.595 3.405 9 O -0.534 6.534 10 N -0.686 5.686 11 C 0.132 3.868 12 H 0.081 0.919 13 C -0.122 4.122 14 C -0.136 4.136 15 C 0.151 3.849 16 N -0.593 5.593 17 C -0.351 4.351 18 H 0.061 0.939 19 C -0.020 4.020 20 N -0.915 5.915 21 Si 1.061 2.939 22 H -0.293 1.293 23 H -0.294 1.294 24 H -0.286 1.286 25 C 0.161 3.839 26 H 0.040 0.960 27 C -0.135 4.135 28 O -0.149 6.149 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.017 0.983 43 H 0.270 0.730 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 -0.728 -16.552 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.063 3.937 4 C -0.045 4.045 5 C -0.214 4.214 6 C -0.153 4.153 7 C -0.108 4.108 8 C 0.380 3.620 9 O -0.414 6.414 10 N -0.336 5.336 11 C 0.026 3.974 12 H 0.099 0.901 13 C -0.160 4.160 14 C -0.175 4.175 15 C 0.025 3.975 16 N -0.318 5.318 17 C -0.480 4.480 18 H 0.079 0.921 19 C -0.223 4.223 20 N -0.555 5.555 21 Si 0.891 3.109 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.212 1.212 25 C 0.054 3.946 26 H 0.058 0.942 27 C -0.192 4.192 28 O -0.044 6.044 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.206 -0.415 -15.555 16.408 hybrid contribution 0.718 -0.304 -0.968 1.243 sum -4.488 -0.719 -16.522 17.136 Atomic orbital electron populations 1.22810 0.80014 1.03352 1.00357 1.87990 1.20321 1.26536 1.95523 1.20734 0.84201 0.86028 1.02742 1.22201 0.92805 1.05063 0.84424 1.21569 0.92440 1.07861 0.99548 1.21896 0.98424 1.02061 0.92950 1.22354 0.82174 1.11474 0.94811 1.16603 0.85717 0.77629 0.82053 1.90836 1.22081 1.52136 1.76358 1.45972 1.12348 1.70881 1.04381 1.21632 0.87171 0.97133 0.91469 0.90127 1.21784 0.98315 0.95595 1.00316 1.21961 0.98087 0.97435 1.00027 1.20882 0.98170 0.86090 0.92333 1.44230 1.14734 1.03077 1.69786 1.19930 0.93234 1.22148 1.12643 0.92091 1.25806 1.06229 0.98974 0.91308 1.70774 1.07447 1.45126 1.32103 0.83573 0.75480 0.75970 0.75845 1.22015 1.22106 1.21181 1.20713 0.93539 0.90229 0.90110 0.94231 1.21773 0.99761 0.95706 1.01971 1.84085 1.16281 1.69488 1.34588 0.89142 0.93419 0.93775 0.90769 0.89663 0.82620 0.82160 0.74756 0.91622 0.92698 0.93069 0.92546 0.90348 0.96501 0.91930 0.92703 0.94146 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.44 10.69 -35.23 -0.38 -4.82 16 3 C 0.14 1.41 6.46 36.01 0.23 1.64 16 4 C 0.01 0.10 6.94 -35.41 -0.25 -0.15 16 5 C -0.19 -2.31 10.77 -39.89 -0.43 -2.74 16 6 C -0.13 -1.83 10.62 -39.40 -0.42 -2.24 16 7 C -0.06 -0.89 7.13 -36.80 -0.26 -1.15 16 8 C 0.59 10.60 7.75 -12.86 -0.10 10.50 16 9 O -0.53 -10.45 16.53 5.19 0.09 -10.36 16 10 N -0.69 -12.33 3.45 -55.01 -0.19 -12.52 16 11 C 0.13 2.38 2.32 -67.82 -0.16 2.22 16 12 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.12 -2.13 5.58 -26.68 -0.15 -2.28 16 14 C -0.14 -2.56 5.91 -26.83 -0.16 -2.71 16 15 C 0.15 3.37 4.66 -3.93 -0.02 3.35 16 16 N -0.59 -13.67 2.49 -165.04 -0.41 -14.09 16 17 C -0.35 -9.00 8.49 -15.06 -0.13 -9.13 16 18 H 0.06 1.57 6.28 -52.49 -0.33 1.24 16 19 C -0.02 -0.55 4.70 -17.43 -0.08 -0.63 16 20 N -0.91 -26.38 12.46 55.49 0.69 -25.68 16 21 Si 1.06 24.41 29.98 -169.99 -5.10 19.31 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.16 3.21 3.20 -67.60 -0.22 2.99 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 C -0.13 -2.54 7.73 37.16 0.29 -2.25 16 28 O -0.15 -2.38 10.40 4.96 0.05 -2.33 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.41 7.93 7.53 -40.82 -0.31 7.62 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.11 7.53 -51.93 -0.39 0.71 16 41 H 0.08 1.98 6.40 -51.93 -0.33 1.64 16 42 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 43 H 0.27 7.84 6.69 -40.82 -0.27 7.57 16 44 H 0.05 1.06 6.39 -51.93 -0.33 0.73 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.33 7.62 -51.93 -0.40 0.93 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -30.71 372.02 -7.40 -38.12 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.03 Total: 8.01 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.73 Total: -1.24 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.09 Total: -52.29 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.24 Total: -17.52 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.10 Total: 19.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.71 -7.40 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.792 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds