Wall clock time and date at job start Tue Mar 31 2020 16:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99886 * 2 1 4 4 C 1.50703 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.35131 * 125.61833 * 89.99532 * 4 3 2 6 6 C 1.40361 * 107.11632 * 180.02562 * 5 4 3 7 7 C 1.36537 * 106.71052 * 0.02562 * 6 5 4 8 8 C 1.46654 * 125.99386 * 179.97438 * 7 6 5 9 9 O 1.21701 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00732 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00467 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49773 * 325.07146 * 11 10 8 13 13 C 1.53046 * 109.52439 * 85.14458 * 11 10 8 14 14 C 1.53045 * 109.53278 * 58.60345 * 13 11 10 15 15 C 1.52760 * 109.38321 * 61.24099 * 14 13 11 16 16 N 1.46923 * 109.00972 * 305.58613 * 15 14 13 17 17 C 1.36935 * 120.63227 * 233.58663 * 16 15 14 18 18 H 1.08000 * 120.00383 * 150.46079 * 17 16 15 19 19 C 1.38817 * 119.99983 * 330.45954 * 17 16 15 20 20 N 1.31626 * 119.99872 * 336.14227 * 19 17 16 21 21 Si 1.86797 * 120.00360 * 156.13765 * 19 17 16 22 22 H 1.48506 * 109.46511 * 60.00416 * 21 19 17 23 23 H 1.48490 * 109.47151 * 300.00571 * 21 19 17 24 24 H 1.48500 * 109.47239 * 179.97438 * 21 19 17 25 25 C 1.46931 * 118.73853 * 53.30573 * 16 15 14 26 26 H 1.09005 * 109.58235 * 66.57487 * 25 16 15 27 27 C 1.53001 * 109.58520 * 186.85416 * 25 16 15 28 28 O 1.33936 * 125.61438 * 270.32864 * 4 3 2 29 29 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47079 * 300.00128 * 1 2 3 31 31 H 1.09004 * 109.47062 * 59.99913 * 1 2 3 32 32 H 1.08997 * 109.47636 * 59.99938 * 3 2 1 33 33 H 1.09005 * 109.47556 * 299.99500 * 3 2 1 34 34 H 1.07998 * 126.44248 * 0.03921 * 5 4 3 35 35 H 1.08002 * 126.64635 * 180.02562 * 6 5 4 36 36 H 0.97002 * 119.99482 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46262 * 178.62260 * 13 11 10 38 38 H 1.08999 * 109.45834 * 298.58950 * 13 11 10 39 39 H 1.08997 * 109.49712 * 181.31719 * 14 13 11 40 40 H 1.08999 * 109.50021 * 301.41080 * 14 13 11 41 41 H 1.09002 * 109.50885 * 185.70100 * 15 14 13 42 42 H 1.09001 * 109.43410 * 65.42323 * 15 14 13 43 43 H 0.97004 * 119.99704 * 354.25846 * 20 19 17 44 44 H 1.08998 * 109.46567 * 60.00535 * 27 25 16 45 45 H 1.09003 * 109.46571 * 179.97438 * 27 25 16 46 46 H 1.08994 * 109.47319 * 300.00434 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1245 -1.0995 6 6 5.6236 1.0188 -0.6546 7 6 5.5816 1.0211 0.7101 8 6 6.7373 0.9282 1.6082 9 8 7.8601 0.8384 1.1475 10 7 6.5560 0.9422 2.9436 11 6 7.7104 0.8487 3.8407 12 1 8.4640 0.1980 3.3972 13 6 8.3034 2.2428 4.0580 14 6 7.2362 3.1662 4.6503 15 6 6.7837 2.6167 6.0019 16 7 6.3493 1.2236 5.8310 17 6 5.1118 0.8213 6.2574 18 1 4.6030 0.0133 5.7529 19 6 4.5112 1.4522 7.3383 20 7 5.2510 2.0755 8.2308 21 14 2.6530 1.4166 7.5262 22 1 2.1931 0.0085 7.6317 23 1 2.0236 2.0555 6.3427 24 1 2.2653 2.1568 8.7538 25 6 7.2655 0.2717 5.1881 26 1 8.1355 0.1144 5.8258 27 6 6.5467 -1.0602 4.9636 28 8 4.2900 1.1185 1.0879 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.9646 1.1515 -2.1268 35 1 6.5069 0.9492 -1.2722 36 1 5.6610 1.0141 3.3108 37 1 9.1471 2.1755 4.7448 38 1 8.6432 2.6457 3.1039 39 1 7.6523 4.1648 4.7830 40 1 6.3816 3.2144 3.9754 41 1 5.9539 3.2146 6.3786 42 1 7.6148 2.6565 6.7061 43 1 6.2184 2.0241 8.1800 44 1 5.6801 -0.9016 4.3217 45 1 7.2279 -1.7647 4.4862 46 1 6.2199 -1.4629 5.9223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993592826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:03 Heat of formation + Delta-G solvation = -63.880150 kcal Electronic energy + Delta-G solvation = -28535.290025 eV Core-core repulsion = 24619.718291 eV Total energy + Delta-G solvation = -3915.571734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.80345 -41.17835 -39.31695 -38.82884 -35.96591 -34.39074 -34.08600 -33.51438 -32.32243 -31.01073 -28.54766 -27.84415 -26.83654 -26.49288 -24.21659 -23.14472 -22.73619 -22.57839 -21.39607 -20.39964 -19.54558 -18.91915 -17.93701 -17.42399 -17.09037 -16.94902 -16.67175 -16.28654 -16.19546 -15.92633 -15.59068 -15.44311 -14.85163 -14.81353 -14.70791 -14.34032 -14.22482 -14.00680 -13.58356 -13.49491 -13.26002 -12.90692 -12.83742 -12.77826 -12.55614 -12.38478 -12.32556 -11.94243 -11.87172 -11.77520 -11.55509 -11.41823 -11.10741 -10.99665 -10.76202 -10.44188 -10.19469 -9.68269 -8.87682 -8.15191 -5.34590 -0.12636 1.17395 1.51067 1.59309 1.65435 1.83530 2.06354 2.15417 2.66800 2.95445 3.26713 3.44328 3.56159 3.77173 3.87237 3.90677 3.93340 4.05520 4.18408 4.23416 4.25889 4.41635 4.50566 4.52957 4.54333 4.58017 4.58875 4.73948 4.80996 4.82523 4.84478 4.88154 4.88902 4.98953 5.05485 5.19935 5.27318 5.32344 5.33476 5.35198 5.50254 5.80737 5.95586 6.06851 6.43541 6.47042 6.96253 7.09835 7.82905 8.27297 9.08959 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005009 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.815323 B = 5588.803705 C = 7673.544117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.137 3.863 4 C 0.001 3.999 5 C -0.187 4.187 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.598 3.402 9 O -0.557 6.557 10 N -0.688 5.688 11 C 0.139 3.861 12 H 0.089 0.911 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.159 3.841 16 N -0.605 5.605 17 C -0.339 4.339 18 H 0.060 0.940 19 C -0.073 4.073 20 N -0.946 5.946 21 Si 1.105 2.895 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.297 1.297 25 C 0.158 3.842 26 H 0.040 0.960 27 C -0.126 4.126 28 O -0.173 6.173 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.409 0.591 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.007 0.993 43 H 0.255 0.745 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -0.905 -19.244 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.061 3.939 4 C -0.051 4.051 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.146 4.146 8 C 0.385 3.615 9 O -0.438 6.438 10 N -0.336 5.336 11 C 0.033 3.967 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.033 3.967 16 N -0.330 5.330 17 C -0.468 4.468 18 H 0.078 0.922 19 C -0.270 4.270 20 N -0.589 5.589 21 Si 0.932 3.068 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.223 1.223 25 C 0.052 3.948 26 H 0.057 0.943 27 C -0.183 4.183 28 O -0.069 6.069 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.210 0.790 35 H 0.191 0.809 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.123 -0.608 -18.281 19.289 hybrid contribution 0.976 -0.293 -0.225 1.043 sum -5.148 -0.901 -18.506 19.230 Atomic orbital electron populations 1.23008 0.78151 1.04244 1.01641 1.87932 1.22408 1.27351 1.95809 1.21002 0.82314 0.85961 1.04614 1.23017 0.94199 1.03736 0.84140 1.21972 0.91128 1.06559 1.00952 1.22235 0.99898 0.99848 0.92120 1.22131 0.82107 1.15030 0.95328 1.16760 0.86125 0.76750 0.81874 1.90807 1.23078 1.53312 1.76638 1.45938 1.11767 1.71255 1.04662 1.21489 0.87367 0.97506 0.90308 0.89289 1.21739 0.98029 0.94832 1.00746 1.21797 0.98274 0.98595 0.97522 1.20713 0.96468 0.85600 0.93926 1.44384 1.14807 1.04037 1.69773 1.20116 0.94093 1.21152 1.11481 0.92208 1.26948 1.09271 0.99350 0.91439 1.70887 1.06597 1.47613 1.33780 0.82963 0.71681 0.76557 0.75640 1.20515 1.20688 1.22338 1.20850 0.92954 0.90191 0.90803 0.94277 1.21677 1.00006 0.95665 1.00978 1.84059 1.16451 1.70248 1.36179 0.88561 0.93205 0.91390 0.90797 0.85839 0.78982 0.80875 0.75511 0.90492 0.91962 0.91162 0.93432 0.93689 0.97533 0.93507 0.93389 0.91494 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.73 10.69 -148.98 -1.59 -10.32 16 3 C 0.14 2.43 6.46 71.24 0.46 2.89 16 4 C 0.00 0.03 6.94 24.97 0.17 0.20 16 5 C -0.19 -3.89 10.77 22.07 0.24 -3.65 16 6 C -0.12 -3.08 10.62 22.39 0.24 -2.84 16 7 C -0.09 -2.96 7.13 24.07 0.17 -2.79 16 8 C 0.60 20.99 7.75 86.44 0.67 21.66 16 9 O -0.56 -21.28 16.53 -4.35 -0.07 -21.36 16 10 N -0.69 -24.47 3.45 -446.16 -1.54 -26.01 16 11 C 0.14 4.90 2.32 45.07 0.10 5.01 16 12 H 0.09 3.04 7.58 -2.39 -0.02 3.02 16 13 C -0.11 -3.89 5.58 30.62 0.17 -3.72 16 14 C -0.12 -4.57 5.91 30.53 0.18 -4.39 16 15 C 0.16 7.23 4.66 86.22 0.40 7.63 16 16 N -0.60 -28.26 2.49 -676.05 -1.69 -29.95 16 17 C -0.34 -17.62 8.49 84.03 0.71 -16.91 16 18 H 0.06 3.10 6.28 -2.91 -0.02 3.08 16 19 C -0.07 -4.02 4.70 84.86 0.40 -3.62 16 20 N -0.95 -56.21 12.46 21.65 0.27 -55.94 16 21 Si 1.11 49.85 29.98 68.60 2.06 51.91 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 C 0.16 6.26 3.20 44.97 0.14 6.40 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 C -0.13 -4.69 7.73 71.98 0.56 -4.14 16 28 O -0.17 -5.42 10.40 -5.17 -0.05 -5.48 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 36 H 0.41 15.72 7.53 -92.71 -0.70 15.02 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 41 H 0.04 2.34 6.40 -2.39 -0.02 2.33 16 42 H 0.01 0.31 7.85 -2.39 -0.02 0.30 16 43 H 0.25 15.42 6.69 -92.71 -0.62 14.80 16 44 H 0.05 1.84 6.39 -2.39 -0.02 1.82 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.89 7.62 -2.39 -0.02 1.87 16 Total: -1.00 -67.59 372.02 3.69 -63.90 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.44 Total: 29.94 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.87 Total: 3.30 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -2.96 Total: -111.90 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.72 Total: -37.15 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.06 Total: 51.91 kcal Total: -67.59 3.69 -63.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.020 kcal (2) G-P(sol) polarization free energy of solvation -67.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds