Wall clock time and date at job start Tue Mar 31 2020 16:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99654 * 2 1 4 4 C 1.50704 * 109.46878 * 179.97438 * 3 2 1 5 5 C 1.35132 * 125.61271 * 90.02055 * 4 3 2 6 6 C 1.40372 * 107.11315 * 179.71012 * 5 4 3 7 7 C 1.36543 * 106.70254 * 0.40454 * 6 5 4 8 8 C 1.46662 * 125.98370 * 179.85426 * 7 6 5 9 9 O 1.21698 * 119.99879 * 359.71803 * 8 7 6 10 10 N 1.34768 * 120.00194 * 179.71943 * 8 7 6 11 11 C 1.46500 * 120.00202 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.52433 * 34.92040 * 11 10 8 13 13 C 1.53035 * 109.49806 * 274.83689 * 11 10 8 14 14 C 1.53036 * 109.54078 * 178.68527 * 13 11 10 15 15 C 1.53192 * 109.31543 * 61.36325 * 14 13 11 16 16 N 1.46923 * 108.77148 * 305.36812 * 15 14 13 17 17 C 1.36940 * 120.62879 * 233.60199 * 16 15 14 18 18 H 1.08002 * 120.00106 * 150.16270 * 17 16 15 19 19 C 1.38817 * 120.00354 * 330.17352 * 17 16 15 20 20 N 1.31613 * 119.99375 * 344.48624 * 19 17 16 21 21 Si 1.86799 * 120.00157 * 164.48828 * 19 17 16 22 22 H 1.48499 * 109.47098 * 89.99716 * 21 19 17 23 23 H 1.48502 * 109.47164 * 209.99843 * 21 19 17 24 24 H 1.48497 * 109.47343 * 330.00040 * 21 19 17 25 25 C 1.46921 * 118.74290 * 53.60899 * 16 15 14 26 26 H 1.09002 * 109.70429 * 66.24777 * 25 16 15 27 27 C 1.53001 * 109.59072 * 186.60212 * 25 16 15 28 28 O 1.33923 * 125.61834 * 269.97589 * 4 3 2 29 29 H 1.08998 * 109.47133 * 59.99915 * 1 2 3 30 30 H 1.09005 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47101 * 299.99559 * 1 2 3 32 32 H 1.09005 * 109.47217 * 60.00309 * 3 2 1 33 33 H 1.08994 * 109.47184 * 299.99834 * 3 2 1 34 34 H 1.07998 * 126.44621 * 359.96270 * 5 4 3 35 35 H 1.07997 * 126.64367 * 180.30217 * 6 5 4 36 36 H 0.97000 * 120.00004 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46098 * 298.70250 * 13 11 10 38 38 H 1.09004 * 109.46242 * 58.66192 * 13 11 10 39 39 H 1.08999 * 109.50322 * 181.32113 * 14 13 11 40 40 H 1.09005 * 109.49861 * 301.40855 * 14 13 11 41 41 H 1.09001 * 109.58579 * 65.15534 * 15 14 13 42 42 H 1.09001 * 109.58820 * 185.58303 * 15 14 13 43 43 H 0.97006 * 119.99496 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.47331 * 179.28984 * 27 25 16 45 45 H 1.09002 * 109.46958 * 299.29064 * 27 25 16 46 46 H 1.08996 * 109.47304 * 59.28563 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2974 1.1246 -1.0976 6 6 5.6247 1.0262 -0.6517 7 6 5.5811 1.0240 0.7131 8 6 6.7363 0.9333 1.6120 9 8 7.8597 0.8453 1.1523 10 7 6.5539 0.9474 2.9473 11 6 7.7079 0.8574 3.8452 12 1 8.5553 1.3812 3.4030 13 6 8.0729 -0.6129 4.0621 14 6 9.2985 -0.7070 4.9738 15 6 8.9670 -0.0855 6.3341 16 7 8.4764 1.2831 6.1217 17 6 9.0504 2.3395 6.7773 18 1 9.0620 3.3175 6.3191 19 6 9.6174 2.1536 8.0306 20 7 9.3459 1.0664 8.7208 21 14 10.7657 3.4463 8.7374 22 1 9.9779 4.4363 9.5148 23 1 11.7576 2.7931 9.6289 24 1 11.4745 4.1373 7.6305 25 6 7.3584 1.4966 5.1928 26 1 6.4552 1.0356 5.5926 27 6 7.1277 2.9974 5.0041 28 8 4.2896 1.1256 1.0896 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.9661 1.1505 -2.1252 35 1 6.5089 0.9628 -1.2685 36 1 5.6586 1.0179 3.3137 37 1 7.2339 -1.1306 4.5271 38 1 8.2983 -1.0766 3.1017 39 1 9.5721 -1.7534 5.1088 40 1 10.1310 -0.1685 4.5209 41 1 8.1964 -0.6773 6.8282 42 1 9.8641 -0.0602 6.9527 43 1 9.7418 0.9365 9.5968 44 1 6.3062 3.1536 4.3050 45 1 6.8791 3.4503 5.9639 46 1 8.0334 3.4573 4.6090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993592849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:11 Heat of formation + Delta-G solvation = -43.513629 kcal Electronic energy + Delta-G solvation = -27546.995142 eV Core-core repulsion = 23632.306567 eV Total energy + Delta-G solvation = -3914.688575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.88969 -39.63283 -38.27794 -37.60909 -34.45282 -33.33532 -32.59321 -31.78969 -31.38387 -29.36412 -27.68766 -26.38123 -25.74404 -24.97819 -23.01926 -21.86657 -21.43549 -20.70084 -20.18107 -19.51785 -18.18622 -17.21889 -16.57751 -16.42774 -16.17138 -16.09648 -15.71132 -14.93045 -14.57386 -14.48110 -14.08124 -13.77868 -13.66558 -13.37245 -13.26183 -13.16085 -13.08910 -12.78376 -12.55425 -12.30586 -11.90504 -11.71868 -11.54587 -11.11990 -10.93315 -10.74424 -10.59360 -10.33367 -10.28276 -10.24314 -10.20750 -10.07464 -10.04888 -9.69906 -9.39814 -8.93127 -8.64730 -8.45612 -6.67104 -5.80031 -3.24591 0.85756 2.02889 2.37907 3.24073 3.25189 3.37196 3.44644 3.47391 3.58010 4.31921 4.48500 4.60290 4.66119 4.76633 4.87746 4.89427 4.96958 5.24250 5.28565 5.37713 5.44429 5.50568 5.57165 5.57329 5.68534 5.78276 5.96188 6.06548 6.13804 6.20997 6.31927 6.40765 6.51942 6.55556 6.56893 6.65777 6.69475 6.75598 6.85931 6.97580 7.06099 7.39602 7.64221 7.66846 7.81637 8.22141 8.44605 9.19707 9.82193 10.38980 11.28818 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.002668 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.816738 B =10490.993639 C =10787.884024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.141 3.859 4 C 0.004 3.996 5 C -0.192 4.192 6 C -0.130 4.130 7 C -0.056 4.056 8 C 0.598 3.402 9 O -0.520 6.520 10 N -0.704 5.704 11 C 0.129 3.871 12 H 0.090 0.910 13 C -0.118 4.118 14 C -0.140 4.140 15 C 0.170 3.830 16 N -0.581 5.581 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.168 3.832 26 H 0.029 0.971 27 C -0.138 4.138 28 O -0.155 6.155 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.401 0.599 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.032 -0.712 -17.754 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.064 3.936 4 C -0.048 4.048 5 C -0.211 4.211 6 C -0.151 4.151 7 C -0.109 4.109 8 C 0.383 3.617 9 O -0.398 6.398 10 N -0.353 5.353 11 C 0.024 3.976 12 H 0.108 0.892 13 C -0.157 4.157 14 C -0.180 4.180 15 C 0.044 3.956 16 N -0.304 5.304 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.060 3.940 26 H 0.046 0.954 27 C -0.195 4.195 28 O -0.050 6.050 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.127 -0.961 -17.536 23.179 hybrid contribution -0.070 0.755 0.392 0.854 sum -15.197 -0.206 -17.144 22.911 Atomic orbital electron populations 1.22815 0.79968 1.03406 1.00349 1.87999 1.20340 1.26558 1.95521 1.20723 0.84154 0.85989 1.02699 1.22166 0.92733 1.05492 0.84425 1.21606 0.92424 1.07407 0.99662 1.21954 0.98525 1.01576 0.93030 1.22398 0.81993 1.11557 0.94928 1.16555 0.85744 0.77542 0.81887 1.90886 1.21965 1.50868 1.76114 1.46095 1.11676 1.72409 1.05120 1.21920 0.87575 0.97137 0.90993 0.89228 1.21777 0.98981 0.95630 0.99274 1.22185 0.96780 0.99861 0.99131 1.20837 0.99501 0.83818 0.91432 1.44029 1.34190 1.03997 1.48230 1.19146 1.31608 0.90538 0.96925 0.91229 1.25090 1.01167 0.97538 0.95611 1.70028 1.44824 1.27704 1.12004 0.86316 0.80772 0.81022 0.78777 1.21406 1.21570 1.20421 1.20555 0.91477 0.94001 0.87986 0.95374 1.21829 1.00165 0.96348 1.01159 1.84009 1.16388 1.69926 1.34716 0.93672 0.89096 0.93537 0.90952 0.89592 0.82539 0.81998 0.76419 0.92601 0.93047 0.92884 0.92426 0.96220 0.89424 0.93635 0.94321 0.91667 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.53 10.69 -35.23 -0.38 -3.91 16 3 C 0.14 1.06 6.46 36.01 0.23 1.30 16 4 C 0.00 0.04 6.94 -35.41 -0.25 -0.20 16 5 C -0.19 -1.95 10.77 -39.88 -0.43 -2.38 16 6 C -0.13 -1.60 10.62 -39.39 -0.42 -2.02 16 7 C -0.06 -0.79 7.13 -36.79 -0.26 -1.05 16 8 C 0.60 9.79 7.75 -12.86 -0.10 9.69 16 9 O -0.52 -10.05 16.53 5.19 0.09 -9.96 16 10 N -0.70 -11.08 4.57 -55.00 -0.25 -11.34 16 11 C 0.13 2.38 1.99 -67.81 -0.14 2.25 16 12 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 13 C -0.12 -2.16 5.46 -26.69 -0.15 -2.31 16 14 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 15 C 0.17 4.01 5.28 -3.71 -0.02 3.99 16 16 N -0.58 -14.17 2.99 -164.77 -0.49 -14.66 16 17 C -0.25 -6.71 8.58 -15.06 -0.13 -6.84 16 18 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 19 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 20 N -0.90 -25.74 11.23 55.49 0.62 -25.12 16 21 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.17 3.41 3.03 -67.60 -0.21 3.20 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 C -0.14 -2.58 7.84 37.16 0.29 -2.29 16 28 O -0.15 -2.00 10.40 5.03 0.05 -1.95 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.40 5.55 8.36 -40.82 -0.34 5.20 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.04 0.61 7.78 -51.93 -0.40 0.20 16 45 H 0.06 1.30 7.67 -51.93 -0.40 0.90 16 46 H 0.06 1.10 7.40 -51.93 -0.38 0.72 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -31.74 376.35 -7.62 -39.35 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.20 Total: 3.71 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.70 Total: 1.73 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.12 Total: -51.12 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.24 Total: -15.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.74 -7.62 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.160 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds