Wall clock time and date at job start Tue Mar 31 2020 16:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99654 * 2 1 4 4 C 1.50704 * 109.46878 * 179.97438 * 3 2 1 5 5 C 1.35132 * 125.61271 * 90.02055 * 4 3 2 6 6 C 1.40372 * 107.11315 * 179.71012 * 5 4 3 7 7 C 1.36543 * 106.70254 * 0.40454 * 6 5 4 8 8 C 1.46662 * 125.98370 * 179.85426 * 7 6 5 9 9 O 1.21698 * 119.99879 * 359.71803 * 8 7 6 10 10 N 1.34768 * 120.00194 * 179.71943 * 8 7 6 11 11 C 1.46500 * 120.00202 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.52433 * 34.92040 * 11 10 8 13 13 C 1.53035 * 109.49806 * 274.83689 * 11 10 8 14 14 C 1.53036 * 109.54078 * 178.68527 * 13 11 10 15 15 C 1.53192 * 109.31543 * 61.36325 * 14 13 11 16 16 N 1.46923 * 108.77148 * 305.36812 * 15 14 13 17 17 C 1.36940 * 120.62879 * 233.60199 * 16 15 14 18 18 H 1.08002 * 120.00106 * 150.16270 * 17 16 15 19 19 C 1.38817 * 120.00354 * 330.17352 * 17 16 15 20 20 N 1.31613 * 119.99375 * 344.48624 * 19 17 16 21 21 Si 1.86799 * 120.00157 * 164.48828 * 19 17 16 22 22 H 1.48499 * 109.47098 * 89.99716 * 21 19 17 23 23 H 1.48502 * 109.47164 * 209.99843 * 21 19 17 24 24 H 1.48497 * 109.47343 * 330.00040 * 21 19 17 25 25 C 1.46921 * 118.74290 * 53.60899 * 16 15 14 26 26 H 1.09002 * 109.70429 * 66.24777 * 25 16 15 27 27 C 1.53001 * 109.59072 * 186.60212 * 25 16 15 28 28 O 1.33923 * 125.61834 * 269.97589 * 4 3 2 29 29 H 1.08998 * 109.47133 * 59.99915 * 1 2 3 30 30 H 1.09005 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47101 * 299.99559 * 1 2 3 32 32 H 1.09005 * 109.47217 * 60.00309 * 3 2 1 33 33 H 1.08994 * 109.47184 * 299.99834 * 3 2 1 34 34 H 1.07998 * 126.44621 * 359.96270 * 5 4 3 35 35 H 1.07997 * 126.64367 * 180.30217 * 6 5 4 36 36 H 0.97000 * 120.00004 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46098 * 298.70250 * 13 11 10 38 38 H 1.09004 * 109.46242 * 58.66192 * 13 11 10 39 39 H 1.08999 * 109.50322 * 181.32113 * 14 13 11 40 40 H 1.09005 * 109.49861 * 301.40855 * 14 13 11 41 41 H 1.09001 * 109.58579 * 65.15534 * 15 14 13 42 42 H 1.09001 * 109.58820 * 185.58303 * 15 14 13 43 43 H 0.97006 * 119.99496 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.47331 * 179.28984 * 27 25 16 45 45 H 1.09002 * 109.46958 * 299.29064 * 27 25 16 46 46 H 1.08996 * 109.47304 * 59.28563 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2974 1.1246 -1.0976 6 6 5.6247 1.0262 -0.6517 7 6 5.5811 1.0240 0.7131 8 6 6.7363 0.9333 1.6120 9 8 7.8597 0.8453 1.1523 10 7 6.5539 0.9474 2.9473 11 6 7.7079 0.8574 3.8452 12 1 8.5553 1.3812 3.4030 13 6 8.0729 -0.6129 4.0621 14 6 9.2985 -0.7070 4.9738 15 6 8.9670 -0.0855 6.3341 16 7 8.4764 1.2831 6.1217 17 6 9.0504 2.3395 6.7773 18 1 9.0620 3.3175 6.3191 19 6 9.6174 2.1536 8.0306 20 7 9.3459 1.0664 8.7208 21 14 10.7657 3.4463 8.7374 22 1 9.9779 4.4363 9.5148 23 1 11.7576 2.7931 9.6289 24 1 11.4745 4.1373 7.6305 25 6 7.3584 1.4966 5.1928 26 1 6.4552 1.0356 5.5926 27 6 7.1277 2.9974 5.0041 28 8 4.2896 1.1256 1.0896 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.9661 1.1505 -2.1252 35 1 6.5089 0.9628 -1.2685 36 1 5.6586 1.0179 3.3137 37 1 7.2339 -1.1306 4.5271 38 1 8.2983 -1.0766 3.1017 39 1 9.5721 -1.7534 5.1088 40 1 10.1310 -0.1685 4.5209 41 1 8.1964 -0.6773 6.8282 42 1 9.8641 -0.0602 6.9527 43 1 9.7418 0.9365 9.5968 44 1 6.3062 3.1536 4.3050 45 1 6.8791 3.4503 5.9639 46 1 8.0334 3.4573 4.6090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993592849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:10 Heat of formation + Delta-G solvation = -64.355691 kcal Electronic energy + Delta-G solvation = -27547.898922 eV Core-core repulsion = 23632.306567 eV Total energy + Delta-G solvation = -3915.592355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.79494 -41.02720 -39.24287 -38.80433 -36.03553 -34.41980 -34.13788 -33.45380 -32.36628 -30.98924 -28.56267 -27.74193 -26.91898 -26.44750 -24.35693 -22.94485 -22.63177 -22.35374 -21.37422 -21.05582 -19.42336 -18.27916 -17.90729 -17.41807 -17.31053 -16.92219 -16.77456 -16.58402 -15.84912 -15.83251 -15.62189 -15.32106 -14.91561 -14.80344 -14.54519 -14.35810 -14.16579 -14.01720 -13.56420 -13.36484 -13.28231 -12.88507 -12.80832 -12.75210 -12.53139 -12.41457 -12.35559 -12.03821 -11.88343 -11.81233 -11.71094 -11.40381 -11.13989 -11.09832 -10.73273 -10.53507 -10.22131 -9.68186 -8.65929 -7.86220 -5.32670 -0.12696 1.17607 1.45362 1.47156 1.49254 1.57909 2.05098 2.06398 2.53360 2.96852 3.29721 3.52685 3.63929 3.78894 3.87510 3.88792 3.99576 4.17958 4.20961 4.30005 4.33663 4.46627 4.53111 4.56563 4.59054 4.60983 4.72192 4.75090 4.86022 4.87194 4.88747 4.92029 5.01200 5.11402 5.14608 5.23013 5.32634 5.38726 5.42972 5.55255 5.70395 5.74261 5.78486 6.09736 6.40202 6.41818 6.96898 7.16090 7.85191 8.37636 9.21105 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.002668 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.816738 B =10490.993639 C =10787.884024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.138 3.862 4 C 0.007 3.993 5 C -0.191 4.191 6 C -0.124 4.124 7 C -0.089 4.089 8 C 0.601 3.399 9 O -0.557 6.557 10 N -0.696 5.696 11 C 0.145 3.855 12 H 0.067 0.933 13 C -0.111 4.111 14 C -0.128 4.128 15 C 0.176 3.824 16 N -0.599 5.599 17 C -0.255 4.255 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.165 3.835 26 H 0.032 0.968 27 C -0.128 4.128 28 O -0.165 6.165 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.412 0.588 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.004 0.996 42 H 0.056 0.944 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 -0.136 -19.937 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.046 4.046 5 C -0.210 4.210 6 C -0.144 4.144 7 C -0.141 4.141 8 C 0.388 3.612 9 O -0.437 6.437 10 N -0.346 5.346 11 C 0.039 3.961 12 H 0.085 0.915 13 C -0.150 4.150 14 C -0.168 4.168 15 C 0.050 3.950 16 N -0.323 5.323 17 C -0.385 4.385 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.790 3.210 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.058 3.942 26 H 0.049 0.951 27 C -0.186 4.186 28 O -0.062 6.062 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.207 0.793 35 H 0.186 0.814 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.232 -0.375 -19.741 26.206 hybrid contribution 0.418 0.568 0.964 1.195 sum -16.814 0.193 -18.776 25.205 Atomic orbital electron populations 1.23000 0.78144 1.04170 1.01689 1.87939 1.22367 1.27435 1.95829 1.21008 0.81965 0.85918 1.04876 1.22982 0.94186 1.03410 0.83982 1.21974 0.91106 1.06715 1.01167 1.22251 0.99935 0.99757 0.92474 1.21919 0.82053 1.15155 0.94947 1.16759 0.86099 0.76445 0.81863 1.90858 1.23632 1.52557 1.76692 1.45871 1.11325 1.72506 1.04891 1.21456 0.87770 0.96734 0.90119 0.91529 1.21708 0.98487 0.95648 0.99143 1.22019 0.97180 1.00614 0.96990 1.20644 0.97523 0.83898 0.92911 1.44261 1.35560 1.03727 1.48733 1.19431 1.31034 0.91168 0.96852 0.91012 1.25786 1.02878 0.99450 0.96212 1.70169 1.46107 1.29473 1.12153 0.85363 0.78835 0.78813 0.77959 1.21035 1.22039 1.19829 1.20688 0.90237 0.95331 0.87935 0.95084 1.21734 1.00788 0.94910 1.01145 1.83988 1.15997 1.70335 1.35844 0.91718 0.88748 0.92782 0.89938 0.86235 0.79323 0.81425 0.75121 0.91694 0.92392 0.90711 0.93355 0.97809 0.92602 0.94176 0.91128 0.93010 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.52 10.69 -148.98 -1.59 -8.11 16 3 C 0.14 1.64 6.46 71.24 0.46 2.10 16 4 C 0.01 0.12 6.94 24.97 0.17 0.30 16 5 C -0.19 -3.30 10.77 22.07 0.24 -3.06 16 6 C -0.12 -2.82 10.62 22.39 0.24 -2.58 16 7 C -0.09 -2.39 7.13 24.07 0.17 -2.22 16 8 C 0.60 19.39 7.75 86.44 0.67 20.06 16 9 O -0.56 -21.53 16.53 -4.34 -0.07 -21.60 16 10 N -0.70 -21.37 4.57 -446.16 -2.04 -23.41 16 11 C 0.15 5.32 1.99 45.07 0.09 5.41 16 12 H 0.07 2.80 7.58 -2.39 -0.02 2.78 16 13 C -0.11 -4.01 5.46 30.62 0.17 -3.84 16 14 C -0.13 -5.09 6.08 30.67 0.19 -4.90 16 15 C 0.18 8.52 5.28 86.36 0.46 8.98 16 16 N -0.60 -29.69 2.99 -675.23 -2.02 -31.71 16 17 C -0.25 -13.73 8.58 84.03 0.72 -13.01 16 18 H 0.07 3.77 6.23 -2.91 -0.02 3.75 16 19 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16 20 N -0.93 -54.74 11.23 21.65 0.24 -54.49 16 21 Si 0.96 44.91 29.58 68.60 2.03 46.94 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 C 0.16 6.68 3.03 44.98 0.14 6.82 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.13 -4.75 7.84 71.98 0.56 -4.18 16 28 O -0.17 -3.99 10.40 -4.93 -0.05 -4.04 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.41 10.87 8.36 -92.71 -0.78 10.10 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.06 3.06 6.15 -2.39 -0.01 3.04 16 43 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 44 H 0.07 2.12 7.78 -2.39 -0.02 2.10 16 45 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 46 H 0.04 1.74 7.40 -2.39 -0.02 1.72 16 Total: -1.00 -69.92 376.35 2.65 -67.27 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.21 Total: 20.07 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.94 Total: 9.08 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -3.81 Total: -109.61 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.72 Total: -33.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.92 2.65 -67.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.917 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds