Wall clock time and date at job start Tue Mar 31 2020 16:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00152 * 2 1 4 4 C 1.50705 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.61493 * 90.01954 * 4 3 2 6 6 C 1.40361 * 107.11337 * 179.78567 * 5 4 3 7 7 C 1.36546 * 106.71076 * 0.35412 * 6 5 4 8 8 C 1.46656 * 125.99045 * 179.91006 * 7 6 5 9 9 O 1.21695 * 119.99840 * 359.71134 * 8 7 6 10 10 N 1.34769 * 120.00205 * 179.71800 * 8 7 6 11 11 C 1.46495 * 120.00387 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.52544 * 324.92319 * 11 10 8 13 13 C 1.53040 * 109.49694 * 85.00107 * 11 10 8 14 14 C 1.53043 * 109.54140 * 181.32051 * 13 11 10 15 15 C 1.53193 * 109.30963 * 298.63474 * 14 13 11 16 16 N 1.46924 * 108.77570 * 54.63298 * 15 14 13 17 17 C 1.36942 * 120.62759 * 126.37031 * 16 15 14 18 18 H 1.07996 * 119.99665 * 209.86526 * 17 16 15 19 19 C 1.38804 * 119.99991 * 29.86387 * 17 16 15 20 20 N 1.31624 * 120.00375 * 15.52866 * 19 17 16 21 21 Si 1.86799 * 119.99819 * 195.53134 * 19 17 16 22 22 H 1.48504 * 109.47127 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47303 * 29.99850 * 21 19 17 24 24 H 1.48501 * 109.47239 * 149.99924 * 21 19 17 25 25 C 1.46923 * 118.74187 * 306.64404 * 16 15 14 26 26 H 1.09004 * 109.58631 * 293.57127 * 25 16 15 27 27 C 1.52996 * 109.58910 * 173.14615 * 25 16 15 28 28 O 1.33927 * 125.61676 * 270.02928 * 4 3 2 29 29 H 1.08996 * 109.47798 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46718 * 300.00209 * 1 2 3 31 31 H 1.09005 * 109.47552 * 59.99511 * 1 2 3 32 32 H 1.09006 * 109.47589 * 60.00327 * 3 2 1 33 33 H 1.08998 * 109.47726 * 300.00058 * 3 2 1 34 34 H 1.08001 * 126.44393 * 359.97438 * 5 4 3 35 35 H 1.08007 * 126.64803 * 180.23273 * 6 5 4 36 36 H 0.97001 * 119.99793 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46284 * 61.29245 * 13 11 10 38 38 H 1.09005 * 109.44845 * 301.33504 * 13 11 10 39 39 H 1.08996 * 109.49796 * 178.68040 * 14 13 11 40 40 H 1.09000 * 109.52406 * 58.60257 * 14 13 11 41 41 H 1.08998 * 109.58588 * 294.84653 * 15 14 13 42 42 H 1.08997 * 109.70252 * 174.49039 * 15 14 13 43 43 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47177 * 59.99973 * 27 25 16 45 45 H 1.08998 * 109.46969 * 180.02562 * 27 25 16 46 46 H 1.08997 * 109.47304 * 299.99802 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2966 1.1248 -1.0995 6 6 5.6240 1.0245 -0.6547 7 6 5.5816 1.0219 0.7101 8 6 6.7375 0.9306 1.6081 9 8 7.8604 0.8422 1.1474 10 7 6.5562 0.9444 2.9435 11 6 7.7108 0.8526 3.8405 12 1 8.4645 0.2008 3.3986 13 6 8.3036 2.2472 4.0545 14 6 9.5296 2.1482 4.9651 15 6 9.1053 1.5890 6.3268 16 7 8.4047 0.3147 6.1172 17 6 8.8056 -0.8181 6.7739 18 1 8.6625 -1.7862 6.3172 19 6 9.3959 -0.7220 8.0265 20 7 9.2994 0.3952 8.7157 21 14 10.3273 -2.1784 8.7342 22 1 9.3943 -3.0313 9.5136 23 1 10.9177 -2.9735 7.6277 24 1 11.4104 -1.6882 9.6241 25 6 7.2695 0.2776 5.1852 26 1 6.4498 0.8754 5.5837 27 6 6.8084 -1.1689 4.9958 28 8 4.2904 1.1241 1.0878 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9645 1.1512 -2.1269 35 1 6.5078 0.9597 -1.2722 36 1 5.6611 1.0144 3.3107 37 1 7.5573 2.8917 4.5190 38 1 8.5984 2.6677 3.0930 39 1 9.9650 3.1385 5.0980 40 1 10.2666 1.4845 4.5129 41 1 8.4384 2.2959 6.8203 42 1 9.9864 1.4239 6.9469 43 1 9.7122 0.4624 9.5909 44 1 6.5016 -1.5812 5.9570 45 1 5.9667 -1.1943 4.3038 46 1 7.6288 -1.7618 4.5914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993592861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:14 Heat of formation + Delta-G solvation = -43.308508 kcal Electronic energy + Delta-G solvation = -27561.487190 eV Core-core repulsion = 23646.807510 eV Total energy + Delta-G solvation = -3914.679680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.88963 -39.64381 -38.27453 -37.62178 -34.45568 -33.33646 -32.59439 -31.79181 -31.38162 -29.36864 -27.68385 -26.37466 -25.74343 -24.98124 -23.02113 -21.86730 -21.44243 -20.70426 -20.18382 -19.51910 -18.18326 -17.21848 -16.58086 -16.42280 -16.16629 -16.09567 -15.71244 -14.92395 -14.61662 -14.44076 -14.08268 -13.77256 -13.66764 -13.37807 -13.26596 -13.15880 -13.08812 -12.78382 -12.55264 -12.30489 -11.89564 -11.72501 -11.53821 -11.10721 -10.92982 -10.73808 -10.58984 -10.33593 -10.28625 -10.23407 -10.21323 -10.07449 -10.04459 -9.69786 -9.40047 -8.93289 -8.64794 -8.45330 -6.66929 -5.79694 -3.24086 0.85612 2.02853 2.37978 3.23864 3.25136 3.37795 3.45146 3.48067 3.58325 4.31894 4.48959 4.60197 4.65964 4.76616 4.87916 4.89771 4.97177 5.25234 5.28627 5.38334 5.44475 5.50515 5.57073 5.57111 5.68476 5.77903 5.95562 6.06789 6.13724 6.21254 6.32354 6.42453 6.51619 6.56088 6.56545 6.65451 6.69181 6.75132 6.85473 6.98761 7.06700 7.39228 7.64102 7.66852 7.82183 8.21976 8.44925 9.20123 9.82603 10.39158 11.29271 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002776 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.655066 B =10085.151514 C =10843.299082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.141 3.859 4 C 0.004 3.996 5 C -0.192 4.192 6 C -0.130 4.130 7 C -0.056 4.056 8 C 0.598 3.402 9 O -0.520 6.520 10 N -0.704 5.704 11 C 0.129 3.871 12 H 0.089 0.911 13 C -0.117 4.117 14 C -0.140 4.140 15 C 0.169 3.831 16 N -0.581 5.581 17 C -0.252 4.252 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.168 3.832 26 H 0.028 0.972 27 C -0.138 4.138 28 O -0.155 6.155 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.401 0.599 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 4.223 -17.770 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.064 3.936 4 C -0.048 4.048 5 C -0.211 4.211 6 C -0.151 4.151 7 C -0.109 4.109 8 C 0.383 3.617 9 O -0.398 6.398 10 N -0.353 5.353 11 C 0.024 3.976 12 H 0.107 0.893 13 C -0.156 4.156 14 C -0.180 4.180 15 C 0.044 3.956 16 N -0.304 5.304 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.216 1.216 25 C 0.060 3.940 26 H 0.046 0.954 27 C -0.196 4.196 28 O -0.050 6.050 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.748 4.016 -17.551 23.274 hybrid contribution -0.155 -0.368 0.388 0.557 sum -14.903 3.647 -17.163 23.021 Atomic orbital electron populations 1.22814 0.79964 1.03428 1.00324 1.88001 1.20337 1.26517 1.95512 1.20717 0.84152 0.86021 1.02662 1.22171 0.92725 1.05484 0.84436 1.21603 0.92432 1.07407 0.99656 1.21954 0.98525 1.01565 0.93037 1.22396 0.82002 1.11566 0.94917 1.16551 0.85737 0.77544 0.81884 1.90885 1.22033 1.50834 1.76070 1.46090 1.11641 1.72442 1.05120 1.21828 0.87002 0.97719 0.91086 0.89251 1.21775 0.98408 0.96172 0.99256 1.22183 0.96574 1.00061 0.99148 1.20837 0.97469 0.85895 0.91420 1.44020 1.31095 1.07338 1.47993 1.19151 1.35437 0.86642 0.96960 0.91212 1.25080 1.01665 0.97052 0.95599 1.70030 1.46235 1.26246 1.12093 0.86317 0.79640 0.82153 0.78784 1.21399 1.20412 1.21575 1.20467 0.90775 0.94789 0.87975 0.95417 1.21834 0.99625 0.96848 1.01245 1.84011 1.16380 1.69921 1.34729 0.89075 0.93554 0.93681 0.90979 0.89620 0.82537 0.81998 0.76416 0.92621 0.93053 0.92890 0.92418 0.96240 0.89402 0.93647 0.91617 0.94261 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.56 10.69 -35.23 -0.38 -3.93 16 3 C 0.14 1.06 6.46 36.01 0.23 1.30 16 4 C 0.00 0.04 6.94 -35.41 -0.25 -0.20 16 5 C -0.19 -1.94 10.77 -39.89 -0.43 -2.37 16 6 C -0.13 -1.60 10.62 -39.39 -0.42 -2.02 16 7 C -0.06 -0.79 7.13 -36.80 -0.26 -1.05 16 8 C 0.60 9.79 7.75 -12.87 -0.10 9.69 16 9 O -0.52 -10.04 16.53 5.19 0.09 -9.96 16 10 N -0.70 -11.08 4.57 -55.22 -0.25 -11.33 16 11 C 0.13 2.38 1.97 -68.04 -0.13 2.24 16 12 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 13 C -0.12 -2.13 5.46 -26.69 -0.15 -2.28 16 14 C -0.14 -2.76 6.08 -26.61 -0.16 -2.92 16 15 C 0.17 4.00 5.29 -3.71 -0.02 3.98 16 16 N -0.58 -14.20 2.99 -165.04 -0.49 -14.69 16 17 C -0.25 -6.73 8.57 -15.06 -0.13 -6.86 16 18 H 0.07 1.83 6.23 -52.49 -0.33 1.50 16 19 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 20 N -0.90 -25.78 11.23 55.49 0.62 -25.15 16 21 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.17 3.42 3.02 -67.83 -0.20 3.22 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 C -0.14 -2.63 7.83 37.16 0.29 -2.34 16 28 O -0.15 -2.00 10.40 5.00 0.05 -1.95 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 36 H 0.40 5.54 8.36 -40.82 -0.34 5.20 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 2.32 6.14 -51.93 -0.32 2.00 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.32 7.62 -51.93 -0.40 0.93 16 45 H 0.04 0.63 7.79 -51.93 -0.40 0.23 16 46 H 0.05 1.11 7.44 -51.93 -0.39 0.72 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -31.80 376.31 -7.62 -39.42 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.20 Total: 3.69 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.70 Total: 1.71 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.12 Total: -51.18 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.24 Total: -15.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.80 -7.62 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.893 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds