Wall clock time and date at job start Tue Mar 31 2020 16:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00152 * 2 1 4 4 C 1.50705 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.61493 * 90.01954 * 4 3 2 6 6 C 1.40361 * 107.11337 * 179.78567 * 5 4 3 7 7 C 1.36546 * 106.71076 * 0.35412 * 6 5 4 8 8 C 1.46656 * 125.99045 * 179.91006 * 7 6 5 9 9 O 1.21695 * 119.99840 * 359.71134 * 8 7 6 10 10 N 1.34769 * 120.00205 * 179.71800 * 8 7 6 11 11 C 1.46495 * 120.00387 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.52544 * 324.92319 * 11 10 8 13 13 C 1.53040 * 109.49694 * 85.00107 * 11 10 8 14 14 C 1.53043 * 109.54140 * 181.32051 * 13 11 10 15 15 C 1.53193 * 109.30963 * 298.63474 * 14 13 11 16 16 N 1.46924 * 108.77570 * 54.63298 * 15 14 13 17 17 C 1.36942 * 120.62759 * 126.37031 * 16 15 14 18 18 H 1.07996 * 119.99665 * 209.86526 * 17 16 15 19 19 C 1.38804 * 119.99991 * 29.86387 * 17 16 15 20 20 N 1.31624 * 120.00375 * 15.52866 * 19 17 16 21 21 Si 1.86799 * 119.99819 * 195.53134 * 19 17 16 22 22 H 1.48504 * 109.47127 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47303 * 29.99850 * 21 19 17 24 24 H 1.48501 * 109.47239 * 149.99924 * 21 19 17 25 25 C 1.46923 * 118.74187 * 306.64404 * 16 15 14 26 26 H 1.09004 * 109.58631 * 293.57127 * 25 16 15 27 27 C 1.52996 * 109.58910 * 173.14615 * 25 16 15 28 28 O 1.33927 * 125.61676 * 270.02928 * 4 3 2 29 29 H 1.08996 * 109.47798 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46718 * 300.00209 * 1 2 3 31 31 H 1.09005 * 109.47552 * 59.99511 * 1 2 3 32 32 H 1.09006 * 109.47589 * 60.00327 * 3 2 1 33 33 H 1.08998 * 109.47726 * 300.00058 * 3 2 1 34 34 H 1.08001 * 126.44393 * 359.97438 * 5 4 3 35 35 H 1.08007 * 126.64803 * 180.23273 * 6 5 4 36 36 H 0.97001 * 119.99793 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46284 * 61.29245 * 13 11 10 38 38 H 1.09005 * 109.44845 * 301.33504 * 13 11 10 39 39 H 1.08996 * 109.49796 * 178.68040 * 14 13 11 40 40 H 1.09000 * 109.52406 * 58.60257 * 14 13 11 41 41 H 1.08998 * 109.58588 * 294.84653 * 15 14 13 42 42 H 1.08997 * 109.70252 * 174.49039 * 15 14 13 43 43 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47177 * 59.99973 * 27 25 16 45 45 H 1.08998 * 109.46969 * 180.02562 * 27 25 16 46 46 H 1.08997 * 109.47304 * 299.99802 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2966 1.1248 -1.0995 6 6 5.6240 1.0245 -0.6547 7 6 5.5816 1.0219 0.7101 8 6 6.7375 0.9306 1.6081 9 8 7.8604 0.8422 1.1474 10 7 6.5562 0.9444 2.9435 11 6 7.7108 0.8526 3.8405 12 1 8.4645 0.2008 3.3986 13 6 8.3036 2.2472 4.0545 14 6 9.5296 2.1482 4.9651 15 6 9.1053 1.5890 6.3268 16 7 8.4047 0.3147 6.1172 17 6 8.8056 -0.8181 6.7739 18 1 8.6625 -1.7862 6.3172 19 6 9.3959 -0.7220 8.0265 20 7 9.2994 0.3952 8.7157 21 14 10.3273 -2.1784 8.7342 22 1 9.3943 -3.0313 9.5136 23 1 10.9177 -2.9735 7.6277 24 1 11.4104 -1.6882 9.6241 25 6 7.2695 0.2776 5.1852 26 1 6.4498 0.8754 5.5837 27 6 6.8084 -1.1689 4.9958 28 8 4.2904 1.1241 1.0878 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9645 1.1512 -2.1269 35 1 6.5078 0.9597 -1.2722 36 1 5.6611 1.0144 3.3107 37 1 7.5573 2.8917 4.5190 38 1 8.5984 2.6677 3.0930 39 1 9.9650 3.1385 5.0980 40 1 10.2666 1.4845 4.5129 41 1 8.4384 2.2959 6.8203 42 1 9.9864 1.4239 6.9469 43 1 9.7122 0.4624 9.5909 44 1 6.5016 -1.5812 5.9570 45 1 5.9667 -1.1943 4.3038 46 1 7.6288 -1.7618 4.5914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993592861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:13 Heat of formation + Delta-G solvation = -64.219890 kcal Electronic energy + Delta-G solvation = -27562.393976 eV Core-core repulsion = 23646.807510 eV Total energy + Delta-G solvation = -3915.586466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.79421 -41.03916 -39.25348 -38.80425 -36.04038 -34.41926 -34.13858 -33.45956 -32.36628 -30.99589 -28.56197 -27.74179 -26.92527 -26.44972 -24.35947 -22.95019 -22.63320 -22.35819 -21.37464 -21.05396 -19.42253 -18.28046 -17.91279 -17.42398 -17.30051 -16.92616 -16.77221 -16.58577 -15.87044 -15.82303 -15.62193 -15.30765 -14.92276 -14.80955 -14.54512 -14.35557 -14.16566 -14.01713 -13.56197 -13.36974 -13.28260 -12.88484 -12.81125 -12.75169 -12.53874 -12.41883 -12.35202 -12.04017 -11.88525 -11.81031 -11.71262 -11.40318 -11.14435 -11.09713 -10.73023 -10.53511 -10.22248 -9.68166 -8.66025 -7.86462 -5.32692 -0.12770 1.17549 1.45469 1.47039 1.49022 1.57746 2.04538 2.06718 2.53235 2.97102 3.29469 3.52668 3.63900 3.78877 3.87519 3.88802 3.99704 4.18275 4.21070 4.30017 4.33387 4.46788 4.53088 4.56521 4.58829 4.61040 4.71697 4.75065 4.85859 4.87255 4.88432 4.92246 5.01349 5.11641 5.14299 5.23122 5.32642 5.38305 5.42382 5.55386 5.70214 5.74639 5.78539 6.10146 6.40072 6.41709 6.96801 7.16126 7.85143 8.37274 9.20912 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002776 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.655066 B =10085.151514 C =10843.299082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.138 3.862 4 C 0.007 3.993 5 C -0.191 4.191 6 C -0.123 4.123 7 C -0.089 4.089 8 C 0.601 3.399 9 O -0.557 6.557 10 N -0.696 5.696 11 C 0.145 3.855 12 H 0.065 0.935 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.175 3.825 16 N -0.599 5.599 17 C -0.255 4.255 18 H 0.071 0.929 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.284 1.284 23 H -0.274 1.274 24 H -0.293 1.293 25 C 0.165 3.835 26 H 0.032 0.968 27 C -0.129 4.129 28 O -0.165 6.165 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.412 0.588 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.056 0.944 43 H 0.249 0.751 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.734 4.439 -19.932 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.046 4.046 5 C -0.210 4.210 6 C -0.144 4.144 7 C -0.141 4.141 8 C 0.388 3.612 9 O -0.437 6.437 10 N -0.346 5.346 11 C 0.039 3.961 12 H 0.083 0.917 13 C -0.149 4.149 14 C -0.168 4.168 15 C 0.050 3.950 16 N -0.323 5.323 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.790 3.210 22 H -0.211 1.211 23 H -0.199 1.199 24 H -0.220 1.220 25 C 0.058 3.942 26 H 0.050 0.950 27 C -0.186 4.186 28 O -0.062 6.062 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.207 0.793 35 H 0.186 0.814 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.871 4.229 -19.735 26.306 hybrid contribution 0.341 -0.424 0.956 1.100 sum -16.531 3.805 -18.779 25.306 Atomic orbital electron populations 1.22997 0.78148 1.04151 1.01694 1.87939 1.22361 1.27452 1.95826 1.21008 0.81956 0.85919 1.04880 1.22988 0.94177 1.03401 0.83993 1.21972 0.91114 1.06711 1.01162 1.22251 0.99936 0.99747 0.92479 1.21918 0.82062 1.15163 0.94939 1.16755 0.86100 0.76445 0.81856 1.90857 1.23702 1.52521 1.76648 1.45866 1.11303 1.72524 1.04894 1.21366 0.87300 0.97308 0.90137 0.91669 1.21701 0.97857 0.96121 0.99191 1.22018 0.97123 1.00720 0.96964 1.20651 0.95798 0.85618 0.92953 1.44250 1.32575 1.06963 1.48504 1.19426 1.34707 0.87485 0.96918 0.91103 1.25767 1.02943 0.99359 0.96183 1.70168 1.47462 1.27992 1.12243 0.85371 0.78246 0.79433 0.77963 1.21064 1.19871 1.21966 1.20595 0.89647 0.95914 0.88006 0.95037 1.21738 1.00185 0.95601 1.01114 1.83990 1.15992 1.70330 1.35860 0.88800 0.92777 0.91691 0.89922 0.86225 0.79320 0.81424 0.75120 0.91552 0.92277 0.90620 0.93420 0.97751 0.92600 0.94163 0.92996 0.91289 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.59 10.69 -148.98 -1.59 -8.18 16 3 C 0.14 1.63 6.46 71.24 0.46 2.09 16 4 C 0.01 0.12 6.94 24.97 0.17 0.30 16 5 C -0.19 -3.30 10.77 22.07 0.24 -3.06 16 6 C -0.12 -2.82 10.62 22.39 0.24 -2.58 16 7 C -0.09 -2.39 7.13 24.07 0.17 -2.22 16 8 C 0.60 19.39 7.75 86.44 0.67 20.06 16 9 O -0.56 -21.52 16.53 -4.33 -0.07 -21.59 16 10 N -0.70 -21.37 4.57 -446.85 -2.04 -23.42 16 11 C 0.14 5.31 1.97 44.93 0.09 5.40 16 12 H 0.07 2.75 7.58 -2.38 -0.02 2.73 16 13 C -0.11 -3.91 5.46 30.62 0.17 -3.74 16 14 C -0.13 -5.06 6.08 30.67 0.19 -4.87 16 15 C 0.18 8.47 5.29 86.36 0.46 8.93 16 16 N -0.60 -29.77 2.99 -676.05 -2.02 -31.79 16 17 C -0.26 -13.83 8.57 84.03 0.72 -13.11 16 18 H 0.07 3.75 6.23 -2.91 -0.02 3.73 16 19 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 20 N -0.93 -54.73 11.23 21.65 0.24 -54.48 16 21 Si 0.96 45.08 29.58 68.60 2.03 47.11 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 25 C 0.17 6.73 3.02 44.83 0.14 6.86 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 C -0.13 -4.87 7.83 71.98 0.56 -4.30 16 28 O -0.17 -3.99 10.40 -5.02 -0.05 -4.05 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.41 10.88 8.36 -92.71 -0.78 10.10 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.06 3.05 6.14 -2.39 -0.01 3.04 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.05 2.08 7.62 -2.39 -0.02 2.06 16 45 H 0.07 2.15 7.79 -2.39 -0.02 2.14 16 46 H 0.04 1.75 7.44 -2.39 -0.02 1.73 16 Total: -1.00 -70.06 376.31 2.64 -67.42 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.21 Total: 19.97 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.94 Total: 9.01 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.82 Total: -109.69 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.72 Total: -33.82 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.06 2.64 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993592861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.200 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds