Wall clock time and date at job start Tue Mar 31 2020 16:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00278 * 2 1 4 4 C 1.50699 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.35132 * 125.61858 * 89.98452 * 4 3 2 6 6 C 1.40360 * 107.11310 * 179.78200 * 5 4 3 7 7 C 1.36538 * 106.71079 * 0.40999 * 6 5 4 8 8 C 1.46661 * 125.98666 * 179.84844 * 7 6 5 9 9 O 1.21701 * 119.99911 * 352.45176 * 8 7 6 10 10 N 1.34775 * 119.99943 * 172.44040 * 8 7 6 11 11 C 1.46925 * 120.62913 * 352.68839 * 10 8 7 12 12 C 1.53190 * 108.77445 * 233.57975 * 11 10 8 13 13 C 1.53042 * 109.31175 * 305.36827 * 12 11 10 14 14 H 1.08996 * 109.46188 * 301.33797 * 13 12 11 15 15 N 1.46509 * 109.46043 * 181.38397 * 13 12 11 16 16 C 1.36929 * 119.99852 * 84.99672 * 15 13 12 17 17 H 1.08000 * 120.00148 * 0.02562 * 16 15 13 18 18 C 1.38818 * 120.00122 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99581 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00335 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46816 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46890 * 120.00109 * 20 18 16 23 23 H 1.48496 * 109.47365 * 240.00527 * 20 18 16 24 24 C 1.53032 * 109.54034 * 61.36454 * 13 12 11 25 25 H 1.08999 * 109.49947 * 58.58522 * 24 13 12 26 26 C 1.53002 * 109.50047 * 178.65197 * 24 13 12 27 27 C 1.46922 * 120.62696 * 172.65822 * 10 8 7 28 28 O 1.33931 * 125.61704 * 270.02863 * 4 3 2 29 29 H 1.08997 * 109.47490 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47176 * 299.99940 * 1 2 3 31 31 H 1.09001 * 109.46841 * 59.99436 * 1 2 3 32 32 H 1.09004 * 109.46732 * 60.00467 * 3 2 1 33 33 H 1.08998 * 109.47505 * 300.00359 * 3 2 1 34 34 H 1.08006 * 126.43663 * 0.03664 * 5 4 3 35 35 H 1.08008 * 126.63814 * 180.29927 * 6 5 4 36 36 H 1.09004 * 109.58722 * 113.79370 * 11 10 8 37 37 H 1.08993 * 109.58731 * 353.36701 * 11 10 8 38 38 H 1.08998 * 109.50048 * 185.41519 * 12 11 10 39 39 H 1.09002 * 109.49714 * 65.31758 * 12 11 10 40 40 H 0.97003 * 119.99624 * 265.00086 * 15 13 12 41 41 H 0.97000 * 119.99555 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47306 * 59.99846 * 26 24 13 43 43 H 1.08996 * 109.47480 * 180.02562 * 26 24 13 44 44 H 1.09009 * 109.47094 * 299.99559 * 26 24 13 45 45 H 1.08997 * 109.59262 * 6.63004 * 27 10 8 46 46 H 1.09002 * 109.70479 * 246.27083 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2975 1.1237 -1.0975 6 6 5.6246 1.0238 -0.6515 7 6 5.5810 1.0213 0.7132 8 6 6.7361 0.9291 1.6122 9 8 7.8436 0.7074 1.1591 10 7 6.5711 1.0901 2.9401 11 6 5.2755 1.5152 3.4873 12 6 5.4940 2.7464 4.3722 13 6 6.5499 2.4264 5.4328 14 1 6.2185 1.5774 6.0306 15 7 6.7376 3.5911 6.3016 16 6 5.9087 3.7859 7.3740 17 1 5.1169 3.0808 7.5796 18 6 6.0869 4.8891 8.1975 19 7 7.0522 5.7481 7.9472 20 14 4.9557 5.1553 9.6600 21 1 3.9594 4.0559 9.7217 22 1 5.7573 5.1671 10.9101 23 1 4.2515 6.4542 9.5113 24 6 7.8747 2.0821 4.7486 25 1 8.1943 2.9215 4.1310 26 6 8.9384 1.7951 5.8102 27 6 7.6832 0.8433 3.8679 28 8 4.2896 1.1244 1.0897 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.9663 1.1500 -2.1252 35 1 6.5088 0.9594 -1.2684 36 1 4.8479 0.7084 4.0828 37 1 4.5990 1.7675 2.6708 38 1 4.5572 3.0143 4.8607 39 1 5.8360 3.5796 3.7582 40 1 7.4490 4.2241 6.1171 41 1 7.1765 6.5192 8.5225 42 1 8.6191 0.9549 6.4268 43 1 9.8820 1.5504 5.3225 44 1 9.0723 2.6762 6.4379 45 1 8.5953 0.6522 3.3025 46 1 7.4545 -0.0187 4.4947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036101780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:26 Heat of formation + Delta-G solvation = -63.121239 kcal Electronic energy + Delta-G solvation = -27728.165604 eV Core-core repulsion = 23812.626779 eV Total energy + Delta-G solvation = -3915.538825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.87915 -41.16878 -39.10776 -38.80261 -36.31159 -34.65698 -34.12203 -33.13139 -32.26705 -31.09317 -28.88920 -27.52447 -26.88189 -26.15251 -24.59732 -23.28021 -23.00155 -22.40188 -21.41588 -20.75532 -19.10815 -18.57521 -18.02145 -17.61195 -17.14854 -16.98487 -16.77945 -16.61777 -15.99526 -15.77010 -15.48005 -15.35207 -15.05409 -14.76666 -14.51238 -14.18325 -14.16113 -14.02417 -13.66819 -13.52748 -13.12032 -12.94502 -12.89167 -12.84611 -12.68957 -12.49406 -12.35802 -12.09297 -12.07858 -11.86583 -11.69105 -11.41698 -11.18513 -11.09710 -10.86392 -10.72788 -9.96998 -9.59965 -8.97666 -7.91372 -5.19267 -0.14278 1.15339 1.40616 1.48663 1.49092 1.58729 1.88982 2.03984 2.57825 2.93826 3.35987 3.42019 3.69800 3.75877 3.82463 3.85054 3.97826 4.05284 4.17642 4.27633 4.29462 4.32523 4.44473 4.51077 4.55925 4.60349 4.63166 4.70534 4.73498 4.78278 4.82196 4.88439 4.91682 4.96382 5.01705 5.17353 5.26145 5.33265 5.38272 5.45807 5.54819 5.58846 5.79573 6.09080 6.19124 6.29997 6.82742 7.36563 8.11600 8.35638 9.32380 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.003302 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.751385 B = 8476.414251 C =10215.153410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.137 3.863 4 C 0.000 4.000 5 C -0.190 4.190 6 C -0.121 4.121 7 C -0.091 4.091 8 C 0.597 3.403 9 O -0.557 6.557 10 N -0.598 5.598 11 C 0.108 3.892 12 C -0.139 4.139 13 C 0.180 3.820 14 H 0.051 0.949 15 N -0.731 5.731 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.297 1.297 24 C -0.101 4.101 25 H 0.053 0.947 26 C -0.129 4.129 27 C 0.126 3.874 28 O -0.158 6.158 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.170 0.830 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.371 0.629 41 H 0.248 0.752 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -12.279 -19.109 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.061 3.939 4 C -0.052 4.052 5 C -0.209 4.209 6 C -0.141 4.141 7 C -0.143 4.143 8 C 0.387 3.613 9 O -0.439 6.439 10 N -0.328 5.328 11 C -0.014 4.014 12 C -0.180 4.180 13 C 0.071 3.929 14 H 0.069 0.931 15 N -0.369 5.369 16 C -0.362 4.362 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.225 1.225 23 H -0.224 1.224 24 C -0.121 4.121 25 H 0.072 0.928 26 C -0.187 4.187 27 C 0.003 3.997 28 O -0.055 6.055 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.206 0.794 35 H 0.187 0.813 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.110 0.890 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.016 -12.605 -18.855 25.214 hybrid contribution -0.139 1.157 0.895 1.470 sum -11.156 -11.447 -17.960 24.042 Atomic orbital electron populations 1.22997 0.78211 1.04190 1.01616 1.87930 1.22285 1.27283 1.95815 1.20992 0.82222 0.85961 1.04716 1.23092 0.94277 1.03218 0.84569 1.21957 0.91153 1.06673 1.01070 1.22239 0.99919 0.99613 0.92355 1.21927 0.82215 1.15201 0.94962 1.16922 0.86029 0.76900 0.81485 1.90822 1.24498 1.52418 1.76122 1.48120 1.13954 1.65436 1.05263 1.22213 0.83542 0.97040 0.98642 1.22475 1.01171 0.96706 0.97647 1.20418 0.92764 0.89712 0.89984 0.93111 1.42584 1.37457 1.26724 1.30169 1.19637 1.08572 1.05453 1.02539 0.90410 1.25498 1.00696 0.98086 1.02573 1.69833 1.35446 1.15433 1.41499 0.85139 0.78320 0.77416 0.79306 1.18842 1.22471 1.22443 1.21614 0.96445 0.97378 0.96619 0.92848 1.21571 0.97646 1.01649 0.97804 1.21759 0.89814 0.97304 0.90777 1.84184 1.16223 1.70354 1.34744 0.88591 0.92917 0.91819 0.90176 0.86451 0.79425 0.81273 0.89645 0.87639 0.91215 0.93869 0.79743 0.94264 0.92086 0.91463 0.93962 0.89002 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.78 10.69 -148.98 -1.59 -8.38 16 3 C 0.14 1.82 6.46 71.24 0.46 2.28 16 4 C 0.00 0.00 6.94 24.97 0.17 0.17 16 5 C -0.19 -3.38 10.77 22.07 0.24 -3.15 16 6 C -0.12 -2.76 10.63 22.39 0.24 -2.52 16 7 C -0.09 -2.50 6.77 24.07 0.16 -2.34 16 8 C 0.60 18.85 7.65 86.44 0.66 19.51 16 9 O -0.56 -20.11 16.30 -4.35 -0.07 -20.18 16 10 N -0.60 -17.79 2.97 -823.64 -2.45 -20.24 16 11 C 0.11 3.01 6.11 86.36 0.53 3.54 16 12 C -0.14 -4.79 5.66 30.67 0.17 -4.61 16 13 C 0.18 6.84 2.19 45.01 0.10 6.94 16 14 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 15 N -0.73 -35.69 4.41 -322.81 -1.42 -37.11 16 16 C -0.23 -12.34 9.93 84.04 0.83 -11.50 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 20 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 C -0.10 -3.36 2.46 -10.72 -0.03 -3.38 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 C -0.13 -4.16 9.03 71.98 0.65 -3.51 16 27 C 0.13 3.61 5.73 86.36 0.49 4.11 16 28 O -0.16 -3.92 7.25 -4.98 -0.04 -3.96 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.11 2.82 4.24 -20.48 -0.09 2.73 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.37 19.95 7.50 -92.71 -0.70 19.25 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.64 7.36 -2.38 -0.02 1.62 16 45 H 0.09 2.69 7.00 -2.39 -0.02 2.67 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.19 376.52 3.35 -66.84 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.21 Total: 31.11 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.40 Total: 3.15 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.59 Total: -116.12 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.70 Total: -32.51 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.19 3.35 -66.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036101780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.717 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds